Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

031

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C40O39sing1.43Å1.42Å
C2O39sing1.36Å1.36Å
C40H40sing1.09Å1.10Å
C40H40Asing1.09Å1.10Å
C40H40Bsing1.09Å1.10Å
C3C2doub1.39Å1.38ÅAromatic
C2C7sing1.39Å1.39ÅAromatic
C4C3sing1.38Å1.40ÅAromatic
C3H3sing1.08Å1.08Å
C4C5doub1.38Å1.39ÅAromatic
C4H4sing1.08Å1.08Å
S8C5sing1.76Å1.75Å
C5C6sing1.38Å1.38ÅAromatic
C6C7doub1.38Å1.38ÅAromatic
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
O10S8doub1.42Å1.49Å
N11S8sing1.66Å1.62Å
S8O9doub1.42Å1.50Å
C12N11sing1.47Å1.45Å
N11C16sing1.46Å1.46Å
C13C12sing1.53Å1.52Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
N15C13sing1.47Å1.47Å
C14C13sing1.54Å1.53Å
C13H13sing1.09Å1.10Å
C47C14sing1.55Å1.53Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C45N15sing1.34Å1.31Å
N15HN15sing0.97Å1.00Å
O46C45doub1.21Å1.22Å
C45C47sing1.52Å1.52Å
C47H47sing1.09Å1.10Å
C47H47Asing1.09Å1.10Å
C17C16sing1.53Å1.51Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
C17C19sing1.53Å1.52Å
C17O18sing1.43Å1.41Å
C17H17sing1.09Å1.10Å
O18HO18sing0.97Å0.95Å
N20C19sing1.46Å1.46Å
C19C32sing1.53Å1.53Å
C19H19sing1.09Å1.10Å
C21N20sing1.35Å1.32Å
N20HN20sing0.97Å1.00Å
O22C21doub1.22Å1.23Å
O23C21sing1.35Å1.36Å
C25O23sing1.45Å1.43Å
C25C24sing1.55Å1.53Å
C24C31sing1.55Å1.52Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C26C25sing1.54Å1.54Å
C25H25sing1.09Å1.10Å
C26C27sing1.54Å1.53Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C27C31sing1.55Å1.52Å
C27O28sing1.44Å1.43Å
C27H27sing1.09Å1.10Å
O28C29sing1.44Å1.43Å
C30C29sing1.55Å1.53Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C31C30sing1.54Å1.53Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C32C38sing1.51Å1.53Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
C38C33doub1.38Å1.39ÅAromatic
C33C34sing1.38Å1.38ÅAromatic
C33H33sing1.08Å1.08Å
C35C34doub1.38Å1.38ÅAromatic
C34H34sing1.08Å1.08Å
C36C35sing1.38Å1.39ÅAromatic
C35H35sing1.08Å1.08Å
C37C36doub1.38Å1.39ÅAromatic
C36H36sing1.08Å1.08Å
C37C38sing1.38Å1.39ÅAromatic
C37H37sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C40O39C2109.2°117.0°
O39C40H40109.5°109.4°
O39C40H40A109.5°109.5°
O39C40H40B109.4°109.5°
O39C2C3122.0°120.0°
O39C2C7118.3°120.1°
H40C40H40A109.4°109.4°
H40C40H40B109.5°109.5°
H40AC40H40B109.5°109.5°
C3C2C7119.3°119.9°
C2C3C4121.3°120.0°
C2C3H3119.3°120.0°
C2C7C6118.1°120.0°
C2C7H7121.0°120.0°
C4C3H3119.3°120.0°
C3C4C5119.8°120.0°
C3C4H4120.1°120.0°
C5C4H4120.1°120.0°
C4C5S8123.6°120.0°
C4C5C6117.4°120.1°
S8C5C6119.0°119.9°
C5S8O10108.4°106.4°
C5S8N11111.7°107.2°
C5S8O9109.5°106.4°
C5C6C7124.0°120.0°
C5C6H6118.0°120.0°
C7C6H6118.0°120.0°
C6C7H7121.0°120.1°
O10S8N11110.1°106.4°
O10S8O9109.5°123.1°
N11S8O9107.6°106.4°
S8N11C12114.7°120.0°
S8N11C16113.7°120.0°
C12N11C16114.8°120.0°
N11C12C13110.7°109.5°
N11C12H12109.0°109.5°
N11C12H12A108.8°109.4°
N11C16C17109.3°109.5°
N11C16H16109.5°109.5°
N11C16H16A109.5°109.5°
C13C12H12109.0°109.5°
C13C12H12A108.8°109.4°
C12C13N15111.3°110.3°
C12C13C14112.6°110.3°
C12C13H13104.5°110.2°
H12C12H12A110.5°109.5°
N15C13C14104.1°105.6°
N15C13H13113.0°110.2°
C13N15C45109.6°111.2°
C13N15HN15125.2°124.4°
C14C13H13111.6°110.2°
C13C14C47103.4°101.8°
C13C14H14111.5°111.0°
C13C14H14A112.8°110.9°
C47C14H14111.5°111.0°
C47C14H14A112.8°111.0°
C14C47C45103.2°104.2°
C14C47H47111.6°110.5°
C14C47H47A113.0°110.5°
H14C14H14A104.9°110.8°
C45N15HN15125.2°124.4°
N15C45O46123.4°124.9°
N15C45C47111.6°110.1°
O46C45C47125.0°125.0°
C45C47H47111.6°110.5°
C45C47H47A112.9°110.5°
H47C47H47A104.8°110.5°
C17C16H16109.5°109.5°
C17C16H16A109.6°109.4°
C16C17C19115.0°109.5°
C16C17O18117.1°109.5°
C16C17H17100.0°109.5°
H16C16H16A109.4°109.4°
C19C17O18112.0°109.5°
C19C17H17106.8°109.5°
C17C19N20108.2°109.4°
C17C19C32110.4°109.5°
C17C19H19109.8°109.5°
O18C17H17103.9°109.5°
C17O18HO18109.5°114.0°
N20C19C32109.9°109.5°
N20C19H19110.3°109.5°
C19N20C21128.7°120.0°
C19N20HN20115.6°120.0°
C32C19H19108.1°109.5°
C19C32C38109.6°109.5°
C19C32H32109.4°109.5°
C19C32H32A109.4°109.5°
C21N20HN20115.7°119.9°
N20C21O22123.8°119.9°
N20C21O23115.7°120.1°
O22C21O23120.6°120.0°
C21O23C25113.2°117.0°
O23C25C24111.3°110.5°
O23C25C26107.4°110.5°
O23C25H25108.0°110.4°
C25C24C31107.0°103.0°
C25C24H24110.3°110.7°
C25C24H24A110.9°110.9°
C24C25C26103.9°104.2°
C24C25H25111.2°110.5°
C31C24H24110.3°110.7°
C31C24H24A110.9°110.7°
C24C31C27106.9°104.1°
C24C31C30112.0°108.8°
C24C31H31107.9°112.7°
H24C24H24A107.5°110.6°
C26C25H25115.0°110.6°
C25C26C27103.8°106.8°
C25C26H26111.4°110.0°
C25C26H26A112.6°110.0°
C27C26H26111.4°110.0°
C27C26H26A112.6°110.0°
C26C27C31104.5°106.4°
C26C27O28111.4°108.7°
C26C27H27110.4°111.8°
H26C26H26A105.2°110.0°
C31C27O28106.1°104.8°
C31C27H27115.4°112.0°
C27C31C30104.0°104.2°
C27C31H31115.5°112.9°
O28C27H27108.9°112.7°
C27O28C29105.4°105.7°
O28C29C30105.4°104.8°
O28C29H29110.9°110.4°
O28C29H29A111.7°110.4°
C30C29H29110.8°110.4°
C30C29H29A111.8°110.4°
C29C30C31104.3°104.1°
C29C30H30111.3°110.5°
C29C30H30A112.3°110.5°
H29C29H29A106.3°110.3°
C31C30H30111.2°110.5°
C31C30H30A112.4°110.6°
C30C31H31110.6°113.3°
H30C30H30A105.5°110.5°
C38C32H32109.4°109.5°
C38C32H32A109.4°109.4°
C32C38C33119.5°120.0°
C32C38C37119.1°119.9°
H32C32H32A109.6°109.5°
C38C33C34120.0°120.0°
C38C33H33120.0°120.0°
C33C38C37121.4°120.0°
C34C33H33120.0°120.0°
C33C34C35118.8°120.0°
C33C34H34120.7°120.0°
C35C34H34120.6°120.0°
C34C35C36120.9°120.0°
C34C35H35119.5°120.0°
C36C35H35119.5°120.0°
C35C36C37120.6°120.0°
C35C36H36119.7°119.9°
C37C36H36119.7°120.0°
C36C37C38118.0°119.9°
C36C37H37121.0°120.0°
C38C37H37121.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O39C40H40H40A120.0°120.0°
O39C40H40H40B120.0°120.0°
O39C40H40AH40B120.0°120.1°
C40O39C2C320.7°0.3°
C40O39C2C7166.8°180.0°
C2O39C40H40151.3°60.0°
C2O39C40H40A31.3°60.0°
C2O39C40H40B88.7°179.9°
O39C2C3C7172.5°179.7°
O39C2C3C4174.4°180.0°
O39C2C3H35.5°0.1°
O39C2C7C6176.7°179.7°
O39C2C7H73.2°0.0°
H40C40H40AH40B120.0°120.0°
C2C3C4H3180.0°179.9°
C2C3C4C51.0°0.0°
C2C3C4H4179.0°180.0°
C3C2C7C64.0°0.5°
C3C2C7H7176.0°179.7°
C7C2C3C41.9°0.3°
C7C2C3H3178.1°179.8°
C2C7C6C53.4°0.5°
C2C7C6H7180.0°179.7°
C2C7C6H6176.7°179.7°
C3C4C5H4180.0°180.0°
C3C4C5S8177.2°180.0°
C3C4C5C61.7°0.0°
H3C3C4C5179.0°179.9°
H3C3C4H40.9°0.1°
C4C5S8C6178.9°179.9°
C4C5C6C70.5°0.3°
C4C5C6H6179.5°179.9°
C4C5S8O1030.7°17.7°
C4C5S8N1190.8°95.8°
C4C5S8O9150.1°150.6°
H4C4C5S82.8°0.0°
H4C4C5C6178.3°180.0°
S8C5C6C7179.5°179.7°
S8C5C6H60.6°0.0°
C5S8O10N11122.4°114.1°
C5S8O10O9119.4°122.9°
C5S8N11O9120.2°113.6°
C5S8N11C1252.2°96.2°
C5S8N11C1682.7°83.8°
C5C6C7H6180.0°179.7°
C5C6C7H7176.6°179.7°
C6C5S8O10150.4°162.3°
C6C5S8N1188.1°84.2°
C6C5S8O931.0°29.4°
H6C6C7H73.3°0.0°
O10S8N11O9119.4°132.9°
O10S8N11C1268.3°17.3°
O10S8N11C16156.9°162.7°
S8N11C12C16134.4°179.9°
S8N11C12C13151.4°114.2°
S8N11C12H1231.4°125.7°
S8N11C12H12A89.2°5.7°
S8N11C16C17125.2°95.0°
S8N11C16H16114.8°145.0°
S8N11C16H16A5.1°24.9°
O9S8N11C12172.4°150.2°
O9S8N11C1637.5°29.8°
N11C12C13H12120.0°120.0°
N11C12C13H12A119.5°119.9°
N11C12H12H12A119.5°120.0°
N11C12C13N15163.2°61.4°
N11C12C13C1446.8°177.6°
N11C12C13H1374.5°60.5°
C12N11C16C17100.0°85.1°
C12N11C16H1620.0°35.0°
C12N11C16H16A139.9°155.0°
C16N11C12C1374.3°65.7°
C16N11C12H12165.7°54.3°
C16N11C12H12A45.2°174.4°
N11C16C17H16120.0°120.1°
N11C16C17H16A120.0°120.0°
N11C16H16H16A120.0°120.0°
N11C16C17C1967.3°175.0°
N11C16C17O18158.1°65.0°
N11C16C17H1746.6°55.0°
C13C12H12H12A119.5°120.0°
C12C13N15C14121.5°119.1°
C12C13N15H13117.2°121.9°
C12C13C14H13117.2°121.9°
C12C13C14C4793.7°93.6°
C12C13C14H14146.3°148.2°
C12C13C14H14A28.5°24.6°
C12C13N15C4593.6°102.0°
C12C13N15HN1586.5°78.0°
H12C12C13N1543.2°178.5°
H12C12C13C1473.2°62.4°
H12C12C13H13165.5°59.6°
H12AC12C13N1577.3°58.5°
H12AC12C13C14166.3°57.7°
H12AC12C13H1344.9°179.6°
N15C13C14H13122.2°119.0°
N15C13C14C4727.0°25.5°
N15C13C14H1493.0°92.7°
N15C13C14H14A149.2°143.6°
C13N15C45HN15180.0°180.0°
C13N15C45O46162.9°179.6°
C13N15C45C4717.1°0.4°
C13C14C47H14120.0°118.2°
C13C14C47H14A122.2°118.1°
C13C14H14H14A122.4°123.7°
C14C13N15C4528.0°17.1°
C14C13N15HN15152.0°162.9°
C13C14C47C4517.4°24.8°
C13C14C47H47137.4°143.5°
C13C14C47H47A104.9°93.9°
H13C13C14C47149.1°144.5°
H13C13C14H1429.1°26.3°
H13C13C14H14A88.6°97.3°
H13C13N15C45149.2°136.1°
H13C13N15HN1530.7°43.9°
C47C14H14H14A122.5°123.8°
C14C47C45N151.1°16.2°
C14C47C45O46179.0°163.7°
C14C47C45H47120.0°118.7°
C14C47C45H47A122.3°118.6°
C14C47H47H47A122.6°122.6°
H14C14C47C45102.6°93.4°
H14C14C47H4717.4°25.3°
H14C14C47H47A135.1°148.0°
H14AC14C47C45139.6°142.9°
H14AC14C47H47100.4°98.4°
H14AC14C47H47A17.3°24.3°
N15C45O46C47179.9°179.9°
N15C45C47H47121.0°134.9°
N15C45C47H47A121.2°102.4°
HN15N15C45O4617.2°0.4°
HN15N15C45C47162.9°179.5°
O46C45C47H4759.0°45.0°
O46C45C47H47A58.7°77.7°
C45C47H47H47A122.5°122.6°
C17C16H16H16A120.1°119.9°
C16C17C19O18136.9°120.0°
C16C17C19H17109.9°120.0°
C16C17O18H17109.2°120.0°
C16C17O18HO1852.9°60.0°
C16C17C19N20160.0°175.0°
C16C17C19C3279.6°65.0°
C16C17C19H1939.5°55.1°
H16C16C17C19172.7°64.9°
H16C16C17O1838.1°55.1°
H16C16C17H1773.3°175.1°
H16AC16C17C1952.8°55.0°
H16AC16C17O1881.9°175.0°
H16AC16C17H17166.7°65.0°
C19C17O18H17114.9°120.0°
C19C17O18HO1883.1°60.0°
C17C19N20C32120.7°120.0°
C17C19N20H19120.2°120.0°
C17C19C32H19120.2°120.0°
C17C19N20C21123.8°155.0°
C17C19N20HN2056.2°25.0°
C17C19C32C38174.7°175.0°
C17C19C32H3265.3°65.0°
C17C19C32H32A54.8°55.0°
O18C17C19N2063.1°65.0°
O18C17C19C3257.3°55.0°
O18C17C19H19176.4°175.0°
H17C17O18HO18162.0°180.0°
H17C17C19N2050.1°55.0°
H17C17C19C32170.5°175.0°
H17C17C19H1970.4°65.0°
N20C19C32H19120.5°120.0°
C19N20C21HN20180.0°180.0°
C19N20C21O2214.2°0.0°
C19N20C21O23165.6°180.0°
N20C19C32C3865.9°65.1°
N20C19C32H3254.1°55.0°
N20C19C32H32A174.2°175.0°
C32C19N20C21115.5°85.0°
C32C19N20HN2064.5°95.0°
C19C32C38H32120.0°120.0°
C19C32C38H32A119.9°120.0°
C19C32H32H32A119.9°120.1°
C19C32C38C33112.9°90.5°
C19C32C38C3768.6°90.0°
H19C19N20C213.6°35.0°
H19C19N20HN20176.4°145.0°
H19C19C32C3854.5°55.0°
H19C19C32H32174.5°175.0°
H19C19C32H32A65.4°65.0°
N20C21O22O23179.8°180.0°
N20C21O23C25175.2°180.0°
HN20N20C21O22165.8°180.0°
HN20N20C21O2314.4°0.0°
O22C21O23C255.0°0.0°
C21O23C25C2478.1°150.0°
C21O23C25C26168.8°95.2°
C21O23C25H2544.3°27.5°
O23C25C24C26115.3°118.7°
O23C25C24H25120.5°122.5°
O23C25C24C3192.6°156.8°
O23C25C24H2427.4°38.4°
O23C25C24H24A146.4°84.8°
O23C25C26H25120.2°122.5°
O23C25C26C2781.9°142.7°
O23C25C26H26158.1°98.0°
O23C25C26H26A40.2°23.4°
C25C24C31H24120.0°118.4°
C25C24C31H24A121.0°118.6°
C25C24H24H24A121.0°123.4°
C24C25C26H25121.8°118.7°
C24C25C26C2736.1°24.0°
C24C25C26H2683.9°143.3°
C24C25C26H26A158.2°95.3°
C25C24C31C270.6°37.6°
C25C24C31C30112.6°148.3°
C25C24C31H31125.4°85.1°
C31C24H24H24A121.0°123.1°
C31C24C25C2622.7°38.1°
C31C24C25H25146.9°80.8°
C24C31C27C2621.9°23.0°
C24C31C27C30118.6°114.0°
C24C31C27H31120.0°122.6°
C24C31C27O2896.0°92.0°
C24C31C27H27143.3°145.5°
C24C31C30C29115.1°112.4°
C24C31C30H31120.4°126.2°
C24C31C30H30124.9°129.0°
C24C31C30H30A6.9°6.3°
H24C24C25C26142.7°80.3°
H24C24C25H2593.1°160.9°
H24C24C31C27120.6°80.8°
H24C24C31C307.4°29.9°
H24C24C31H31114.6°156.5°
H24AC24C25C2698.3°156.5°
H24AC24C25H2525.9°37.7°
H24AC24C31C27120.4°156.2°
H24AC24C31C30126.4°93.1°
H24AC24C31H314.4°33.5°
C25C26C27H26120.0°119.4°
C25C26C27H26A122.1°119.3°
C25C26H26H26A122.3°121.4°
C25C26C27C3135.9°0.6°
C25C26C27O2878.3°113.0°
C25C26C27H27160.6°122.0°
H25C25C26C27157.9°94.8°
H25C25C26H2637.9°24.5°
H25C25C26H26A80.0°145.9°
C27C26H26H26A122.3°121.3°
C26C27C31O28117.9°115.1°
C26C27C31H27121.4°122.5°
C26C27O28H27122.0°124.5°
C26C27O28C29151.2°152.5°
C26C27C31C30140.5°137.0°
C26C27C31H3198.1°99.6°
H26C26C27C3184.1°119.9°
H26C26C27O28161.7°127.7°
H26C26C27H2740.5°2.6°
H26AC26C27C31158.0°118.7°
H26AC26C27O2843.8°6.3°
H26AC26C27H2777.4°118.7°
C31C27O28H27124.8°122.0°
C31C27O28C2938.0°39.1°
C27C31C30C290.0°1.7°
C27C31C30H31124.5°123.1°
C27C31C30H30120.1°120.4°
C27C31C30H30A121.9°117.0°
C27O28C29C3037.7°40.4°
C27O28C29H2982.2°78.5°
C27O28C29H29A159.3°159.3°
O28C27C31C3022.6°22.0°
O28C27C31H31144.0°145.3°
H27C27O28C2986.8°82.9°
H27C27C31C3098.1°100.5°
H27C27C31H3123.3°22.9°
O28C29C30H29120.0°118.9°
O28C29C30H29A121.6°118.9°
O28C29H29H29A121.7°122.3°
O28C29C30C3122.5°24.9°
O28C29C30H30142.5°143.5°
O28C29C30H30A99.4°93.9°
C30C29H29H29A121.7°122.3°
C29C30C31H30120.0°118.6°
C29C30C31H30A121.9°118.7°
C29C30H30H30A122.1°122.6°
C29C30C31H31124.5°121.4°
H29C29C30C3197.5°93.9°
H29C29C30H3022.5°24.7°
H29C29C30H30A140.5°147.2°
H29AC29C30C31144.1°143.8°
H29AC29C30H3095.9°97.6°
H29AC29C30H30A22.1°25.0°
C31C30H30H30A122.1°122.8°
H30C30C31H314.5°2.8°
H30AC30C31H31113.6°119.9°
C38C32H32H32A120.0°119.9°
C32C38C33C37178.4°179.5°
C32C38C33C34176.6°180.0°
C32C38C33H333.3°0.2°
C32C38C37C36179.8°180.0°
C32C38C37H370.2°0.2°
H32C32C38C337.1°149.4°
H32C32C38C37171.4°30.0°
H32AC32C38C33127.1°29.5°
H32AC32C38C3751.3°150.0°
C38C33C34H33180.0°179.8°
C38C33C34C357.6°0.3°
C38C33C34H34172.4°179.7°
C33C38C37C361.4°0.5°
C33C38C37H37178.6°179.7°
C33C34C35H34180.0°180.0°
C33C34C35C367.0°0.0°
C33C34C35H35173.0°179.9°
C34C33C38C374.9°0.5°
H33C33C34C35172.4°179.9°
H33C33C34H347.6°0.1°
H33C33C38C37175.1°179.7°
C34C35C36H35180.0°179.9°
C34C35C36C373.6°0.0°
C34C35C36H36176.4°180.0°
H34C34C35C36173.0°180.0°
H34C34C35H357.0°0.0°
C35C36C37H36180.0°180.0°
C35C36C37C380.7°0.2°
C35C36C37H37179.3°180.0°
H35C35C36C37176.4°179.9°
H35C35C36H363.6°0.1°
C36C37C38H37180.0°179.8°
H36C36C37C38179.3°179.8°
H36C36C37H370.7°0.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon