Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_002334

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C1sing1.47Å1.43Å
N1C2sing1.47Å1.49Å
N1H1sing1.01Å1.00Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C1H4sing1.09Å1.10Å
C2C3sing1.53Å1.53Å
C2C7sing1.51Å1.53Å
C2H5sing1.09Å1.10Å
C3C4sing1.53Å1.52Å
C3H6sing1.09Å1.10Å
C3H7sing1.09Å1.10Å
C4C5sing1.53Å1.54Å
C4C6sing1.53Å1.56Å
C4H8sing1.09Å1.10Å
C5H9sing1.09Å1.10Å
C5H10sing1.09Å1.10Å
C5H11sing1.09Å1.10Å
C6H12sing1.09Å1.10Å
C6H13sing1.09Å1.10Å
C6H14sing1.09Å1.10Å
C7O1doub1.21Å1.28Å
N2C8sing1.46Å1.53Å
N2H15sing0.97Å1.00Å
C8C9sing1.51Å1.48Å
C8C10sing1.53Å1.52Å
C8H16sing1.09Å1.10Å
C9O2doub1.21Å1.31Å
C10C11sing1.51Å1.52Å
C10H17sing1.09Å1.10Å
C10H18sing1.09Å1.10Å
C11C12doub1.38Å1.38ÅAromatic
C11C13sing1.38Å1.38ÅAromatic
C12C14sing1.38Å1.38ÅAromatic
C12H19sing1.08Å1.08Å
C13C15doub1.38Å1.38ÅAromatic
C13H20sing1.08Å1.08Å
C14C16doub1.38Å1.38ÅAromatic
C14H21sing1.08Å1.08Å
C15C16sing1.38Å1.38ÅAromatic
C15H22sing1.08Å1.08Å
C16H23sing1.08Å1.08Å
N3C17sing1.46Å1.50Å
N3C18sing1.47Å1.52Å
C17H24sing1.09Å1.10Å
C17H25sing1.09Å1.10Å
C17H26sing1.09Å1.10Å
C18C19sing1.53Å1.58Å
C18C23sing1.51Å1.54Å
C18H27sing1.09Å1.10Å
C19C20sing1.53Å1.51Å
C19H28sing1.09Å1.10Å
C19H29sing1.09Å1.10Å
C20C21sing1.53Å1.53Å
C20C22sing1.53Å1.53Å
C20H30sing1.09Å1.10Å
C21H31sing1.09Å1.10Å
C21H32sing1.09Å1.10Å
C21H33sing1.09Å1.10Å
C22H34sing1.09Å1.10Å
C22H35sing1.09Å1.10Å
C22H36sing1.09Å1.10Å
C23O3doub1.21Å1.14Å
N4C24sing1.46Å1.52Å
N4H37sing0.97Å1.00Å
C24C25sing1.51Å1.59Å
C24C26sing1.53Å1.62Å
C24H38sing1.09Å1.10Å
C25O4doub1.21Å1.23Å
C25O5sing1.34Å1.23Å
O5H39sing0.97Å0.95Å
C26C27sing1.51Å1.50Å
C26H40sing1.09Å1.10Å
C26H41sing1.09Å1.10Å
C27C28doub1.38Å1.38ÅAromatic
C27C29sing1.38Å1.38ÅAromatic
C28C30sing1.38Å1.38ÅAromatic
C28H42sing1.08Å1.08Å
C29C31doub1.38Å1.38ÅAromatic
C29H43sing1.08Å1.08Å
C30C32doub1.38Å1.38ÅAromatic
C30H44sing1.08Å1.08Å
C31C32sing1.38Å1.38ÅAromatic
C31H45sing1.08Å1.08Å
C32H46sing1.08Å1.08Å
C7N2sing1.35Å1.37Å
C9N3sing1.35Å1.35Å
C23N4sing1.35Å1.30Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1N1C2114.1°111.0°
C1N1H1108.3°111.0°
N1C1H2109.5°109.4°
N1C1H3109.4°109.5°
N1C1H4109.4°109.5°
C2N1H1108.3°111.0°
N1C2C3110.5°109.5°
N1C2C7104.5°109.5°
N1C2H5109.1°109.4°
H2C1H3109.5°109.4°
H2C1H4109.5°109.5°
H3C1H4109.5°109.5°
C3C2C7115.1°109.4°
C3C2H5108.7°109.5°
C2C3C4109.8°109.5°
C2C3H6109.4°109.5°
C2C3H7109.4°109.5°
C7C2H5108.6°109.5°
C2C7O1117.2°120.0°
C2C7N2121.3°120.0°
C4C3H6109.4°109.4°
C4C3H7109.4°109.5°
C3C4C5107.9°109.5°
C3C4C6112.2°109.5°
C3C4H8110.2°109.5°
H6C3H7109.4°109.5°
C5C4C6107.0°109.5°
C5C4H8109.9°109.5°
C4C5H9109.5°109.5°
C4C5H10109.5°109.5°
C4C5H11109.5°109.5°
C6C4H8109.7°109.5°
C4C6H12109.5°109.4°
C4C6H13109.4°109.5°
C4C6H14109.5°109.5°
H9C5H10109.5°109.5°
H9C5H11109.5°109.5°
H10C5H11109.5°109.4°
H12C6H13109.5°109.5°
H12C6H14109.5°109.5°
H13C6H14109.5°109.5°
O1C7N2121.5°120.0°
C8N2H15118.6°120.0°
N2C8C9101.4°109.5°
N2C8C10115.7°109.5°
N2C8H16110.9°109.5°
C8N2C7122.8°120.0°
H15N2C7118.6°120.0°
C9C8C10105.6°109.4°
C9C8H16111.6°109.5°
C8C9O2121.6°120.0°
C8C9N3122.0°120.0°
C10C8H16111.0°109.5°
C8C10C11112.3°109.5°
C8C10H17108.8°109.5°
C8C10H18108.7°109.4°
O2C9N3116.3°120.0°
C11C10H17108.8°109.5°
C11C10H18108.8°109.5°
C10C11C12122.9°120.0°
C10C11C13118.3°120.0°
H17C10H18109.4°109.4°
C12C11C13118.8°120.0°
C11C12C14121.7°120.0°
C11C12H19119.2°120.0°
C11C13C15119.8°120.0°
C11C13H20120.1°120.0°
C14C12H19119.2°120.0°
C12C14C16119.2°120.0°
C12C14H21120.4°120.0°
C15C13H20120.1°120.0°
C13C15C16121.0°120.0°
C13C15H22119.5°120.0°
C16C14H21120.4°120.0°
C14C16C15119.4°120.0°
C14C16H23120.3°120.0°
C16C15H22119.5°120.0°
C15C16H23120.3°120.0°
C17N3C18120.2°120.0°
N3C17H24109.5°109.4°
N3C17H25109.5°109.5°
N3C17H26109.5°109.5°
C17N3C9122.5°120.0°
N3C18C19109.1°109.5°
N3C18C23109.2°109.4°
N3C18H27110.8°109.5°
C18N3C9117.3°120.0°
H24C17H25109.5°109.4°
H24C17H26109.5°109.4°
H25C17H26109.5°109.5°
C19C18C23107.1°109.5°
C19C18H27110.0°109.5°
C18C19C20111.1°109.5°
C18C19H28109.1°109.5°
C18C19H29109.0°109.4°
C23C18H27110.6°109.5°
C18C23O3118.7°120.0°
C18C23N4114.4°120.0°
C20C19H28109.1°109.5°
C20C19H29109.1°109.5°
C19C20C21111.0°109.5°
C19C20C22109.8°109.5°
C19C20H30108.9°109.5°
H28C19H29109.5°109.5°
C21C20C22109.5°109.5°
C21C20H30108.7°109.5°
C20C21H31109.5°109.5°
C20C21H32109.5°109.5°
C20C21H33109.5°109.5°
C22C20H30108.8°109.5°
C20C22H34109.5°109.5°
C20C22H35109.4°109.5°
C20C22H36109.5°109.5°
H31C21H32109.5°109.5°
H31C21H33109.4°109.4°
H32C21H33109.4°109.5°
H34C22H35109.4°109.4°
H34C22H36109.5°109.5°
H35C22H36109.5°109.5°
O3C23N4126.8°120.0°
C24N4H37120.5°120.0°
N4C24C25105.7°109.5°
N4C24C26106.8°109.5°
N4C24H38112.1°109.5°
C24N4C23119.0°120.0°
H37N4C23120.5°120.0°
C25C24C26110.0°109.5°
C25C24H38111.2°109.4°
C24C25O4123.5°120.0°
C24C25O5111.1°120.0°
C26C24H38110.8°109.5°
C24C26C27114.3°109.5°
C24C26H40108.2°109.5°
C24C26H41108.3°109.5°
O4C25O5125.1°120.0°
C25O5H39109.5°117.1°
C27C26H40108.3°109.4°
C27C26H41108.2°109.5°
C26C27C28122.5°120.0°
C26C27C29119.7°120.0°
H40C26H41109.5°109.5°
C28C27C29117.8°120.0°
C27C28C30121.7°120.0°
C27C28H42119.2°120.0°
C27C29C31121.3°120.0°
C27C29H43119.4°120.0°
C30C28H42119.2°120.0°
C28C30C32119.7°120.0°
C28C30H44120.2°120.0°
C31C29H43119.3°120.0°
C29C31C32120.1°120.0°
C29C31H45120.0°120.0°
C32C30H44120.2°120.0°
C30C32C31119.5°120.0°
C30C32H46120.3°120.0°
C32C31H45119.9°120.0°
C31C32H46120.3°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1N1C2H1120.7°124.0°
N1C1H2H3120.0°120.0°
N1C1H2H4120.0°120.0°
N1C1H3H4119.9°120.1°
C1N1C2C3175.8°154.8°
C1N1C2C759.8°85.2°
C1N1C2H556.2°34.8°
C2N1C1H2180.0°63.9°
C2N1C1H360.0°56.1°
C2N1C1H460.0°176.1°
N1C2C3C7118.1°120.0°
N1C2C3H5119.8°120.0°
N1C2C7H5116.4°119.9°
N1C2C3C4161.0°65.0°
N1C2C3H640.9°55.0°
N1C2C3H779.0°175.0°
N1C2C7O146.4°25.8°
N1C2C7N2133.8°154.1°
H1N1C1H259.3°60.1°
H1N1C1H360.7°180.0°
H1N1C1H4179.3°59.9°
H1N1C2C355.1°30.9°
H1N1C2C7179.5°150.8°
H1N1C2H564.4°89.2°
H2C1H3H4120.0°120.0°
C3C2C7H5122.2°120.0°
C2C3C4H6120.1°120.0°
C2C3C4H7120.1°120.0°
C2C3H6H7119.9°120.0°
C2C3C4C5164.7°175.0°
C2C3C4C677.8°65.0°
C2C3C4H844.7°55.0°
C3C2C7O175.1°94.2°
C3C2C7N2104.7°85.9°
C7C2C3C480.9°175.0°
C7C2C3H6159.0°65.0°
C7C2C3H739.1°55.0°
C2C7O1N2179.8°179.9°
C2C7N2C8179.7°176.0°
C2C7N2H150.3°4.0°
H5C2C3C441.2°55.0°
H5C2C3H678.9°174.9°
H5C2C3H7161.2°65.0°
H5C2C7O1162.8°145.7°
H5C2C7N217.4°34.2°
C4C3H6H7119.8°120.0°
C3C4C5C6120.9°120.0°
C3C4C5H8120.1°120.0°
C3C4C6H8122.7°120.0°
C3C4C5H9180.0°60.0°
C3C4C5H1060.0°180.0°
C3C4C5H1160.0°60.0°
C3C4C6H12180.0°180.0°
C3C4C6H1360.0°60.0°
C3C4C6H1460.0°60.0°
H6C3C4C575.3°55.0°
H6C3C4C642.3°175.0°
H6C3C4H8164.8°65.0°
H7C3C4C544.6°65.0°
H7C3C4C6162.2°55.0°
H7C3C4H875.4°174.9°
C5C4C6H8119.1°120.0°
C4C5H9H10120.0°120.0°
C4C5H9H11120.0°120.0°
C4C5H10H11120.0°120.0°
C5C4C6H1261.9°60.1°
C5C4C6H13178.1°60.0°
C5C4C6H1458.1°180.0°
C6C4C5H959.1°60.0°
C6C4C5H1060.9°60.0°
C6C4C5H11179.1°180.0°
C4C6H12H13120.0°120.0°
C4C6H12H14120.0°119.9°
C4C6H13H14120.0°120.0°
H8C4C5H959.9°180.0°
H8C4C5H10179.9°60.0°
H8C4C5H1160.1°60.0°
H8C4C6H1257.2°60.0°
H8C4C6H1362.8°180.0°
H8C4C6H14177.3°60.0°
H9C5H10H11120.0°120.0°
H12C6H13H14120.0°120.0°
O1C7N2C80.5°4.1°
O1C7N2H15179.5°175.9°
C8N2H15C7180.0°180.0°
N2C8C9C10121.0°120.0°
N2C8C9H16118.2°120.0°
N2C8C10H16127.5°120.0°
N2C8C9O257.7°0.1°
N2C8C10C1169.7°62.8°
N2C8C10H1750.8°57.2°
N2C8C10H18169.9°177.2°
N2C8C9N3122.6°180.0°
H15N2C8C959.5°50.6°
H15N2C8C1054.2°69.3°
H15N2C8H16178.2°170.6°
C9C8C10H16121.2°120.0°
C8C9O2N3179.7°179.9°
C9C8C10C11179.1°177.2°
C9C8C10H1760.5°62.8°
C9C8C10H1858.6°57.2°
C8C9N3C170.7°0.0°
C8C9N3C18179.6°179.9°
C9C8N2C7120.5°129.4°
C10C8C9O263.3°120.0°
C8C10C11H17120.4°120.0°
C8C10C11H18120.4°120.0°
C8C10H17H18118.6°120.0°
C8C10C11C1287.2°89.7°
C8C10C11C1392.8°90.6°
C10C8N2C7125.8°110.7°
C10C8C9N3116.4°60.0°
H16C8C9O2175.9°120.0°
H16C8C10C1157.9°57.2°
H16C8C10H17178.3°177.2°
H16C8C10H1862.6°62.8°
H16C8N2C71.8°9.3°
H16C8C9N34.4°60.0°
O2C9N3C17179.6°179.9°
O2C9N3C180.7°0.0°
C11C10H17H18118.7°120.0°
C10C11C12C13179.9°179.7°
C10C11C12C14180.0°180.0°
C10C11C12H190.0°0.0°
C10C11C13C15180.0°180.0°
C10C11C13H200.0°0.1°
H17C10C11C1233.3°30.3°
H17C10C11C13146.8°149.3°
H18C10C11C12152.4°150.3°
H18C10C11C1327.6°29.4°
C11C12C14H19180.0°179.9°
C12C11C13C150.1°0.4°
C12C11C13H20180.0°179.7°
C11C12C14C160.0°0.1°
C11C12C14H21180.0°180.0°
C13C11C12C140.0°0.4°
C13C11C12H19180.0°179.7°
C11C13C15H20180.0°179.9°
C11C13C15C160.0°0.1°
C11C13C15H22180.0°180.0°
C12C14C16H21180.0°179.9°
C12C14C16C150.0°0.2°
C12C14C16H23180.0°180.0°
H19C12C14C16180.0°180.0°
H19C12C14H210.0°0.1°
C13C15C16C140.0°0.2°
C13C15C16H22180.0°179.9°
C13C15C16H23180.0°180.0°
H20C13C15C16180.0°180.0°
H20C13C15H220.0°0.1°
C14C16C15H23180.0°179.8°
C14C16C15H22180.0°179.7°
H21C14C16C15180.0°179.7°
H21C14C16H230.0°0.0°
H22C15C16H230.0°0.0°
C17N3C18C9178.9°179.9°
N3C17H24H25120.0°120.0°
N3C17H24H26120.0°120.0°
N3C17H25H26120.0°120.1°
C17N3C18C1956.6°59.9°
C17N3C18C2360.2°60.1°
C17N3C18H27177.7°180.0°
C18N3C17H24180.0°90.1°
C18N3C17H2560.0°29.9°
C18N3C17H2660.0°150.0°
N3C18C19C23118.1°120.0°
N3C18C19H27121.7°120.0°
N3C18C23H27122.2°120.0°
N3C18C19C2064.7°65.0°
N3C18C19H2855.5°55.0°
N3C18C19H29175.0°175.0°
N3C18C23O3161.2°0.1°
N3C18C23N419.3°180.0°
H24C17H25H26120.0°120.0°
H24C17N3C91.1°90.0°
H25C17N3C9121.1°150.0°
H26C17N3C9118.9°29.9°
C19C18C23H27119.8°120.0°
C18C19C20H28120.3°120.0°
C18C19C20H29120.2°120.0°
C18C19H28H29119.2°120.0°
C18C19C20C2161.6°175.0°
C18C19C20C22177.1°65.0°
C18C19C20H3058.1°55.0°
C19C18C23O343.1°119.9°
C19C18N3C9122.4°120.0°
C19C18C23N4137.4°60.0°
C23C18C19C20177.1°175.0°
C23C18C19H2862.6°65.0°
C23C18C19H2956.9°55.0°
C18C23O3N4179.4°179.9°
C18C23N4C24179.2°180.0°
C18C23N4H370.8°0.1°
C23C18N3C9120.8°120.0°
H27C18C19C2056.9°55.0°
H27C18C19H28177.2°175.0°
H27C18C19H2963.3°65.0°
H27C18C23O376.7°120.0°
H27C18N3C91.2°0.0°
H27C18C23N4102.8°60.1°
C20C19H28H29119.3°120.0°
C19C20C21C22121.5°120.0°
C19C20C21H30119.8°120.0°
C19C20C22H30119.1°120.0°
C19C20C21H31180.0°60.0°
C19C20C21H3260.0°180.0°
C19C20C21H3360.0°60.0°
C19C20C22H34180.0°180.0°
C19C20C22H3560.0°60.0°
C19C20C22H3660.0°60.0°
H28C19C20C21178.2°55.0°
H28C19C20C2256.9°175.0°
H28C19C20H3062.1°65.0°
H29C19C20C2158.7°65.0°
H29C19C20C2262.6°55.0°
H29C19C20H30178.3°175.0°
C21C20C22H30118.7°120.0°
C20C21H31H32120.0°120.0°
C20C21H31H33120.0°120.0°
C20C21H32H33120.0°120.1°
C21C20C22H3457.8°60.0°
C21C20C22H35177.8°60.0°
C21C20C22H3662.2°180.0°
C22C20C21H3158.5°60.0°
C22C20C21H3261.5°60.0°
C22C20C21H33178.5°180.0°
C20C22H34H35120.0°120.0°
C20C22H34H36120.0°120.0°
C20C22H35H36120.0°120.0°
H30C20C21H3160.2°180.0°
H30C20C21H32179.8°60.0°
H30C20C21H3359.8°60.0°
H30C20C22H3460.9°60.0°
H30C20C22H3559.1°NaN°
H30C20C22H36179.1°60.0°
H31C21H32H33120.0°119.9°
H34C22H35H36120.0°120.0°
O3C23N4C241.3°0.1°
O3C23N4H37178.6°180.0°
C24N4H37C23180.0°179.9°
N4C24C25C26115.0°120.0°
N4C24C25H38121.9°120.0°
N4C24C26H38122.4°120.0°
N4C24C25O43.0°0.0°
N4C24C25O5177.4°180.0°
N4C24C26C2767.8°65.0°
N4C24C26H4052.9°175.1°
N4C24C26H41171.5°55.0°
H37N4C24C2550.5°95.0°
H37N4C24C2666.6°25.0°
H37N4C24H38171.8°145.0°
C25C24C26H38123.3°120.0°
C24C25O4O5173.6°180.0°
C24C25O5H39174.3°180.0°
C25C24C26C2746.5°175.0°
C25C24C26H40167.2°55.0°
C25C24C26H4174.2°65.0°
C25C24N4C23129.5°84.9°
C26C24C25O4118.0°120.0°
C26C24C25O567.6°60.0°
C24C26C27H40120.7°120.0°
C24C26C27H41120.7°120.0°
C24C26H40H41117.8°120.0°
C24C26C27C2885.9°90.0°
C24C26C27C2994.1°90.2°
C26C24N4C23113.4°155.0°
H38C24C25O4118.9°120.0°
H38C24C25O555.5°60.0°
H38C24C26C27169.8°55.0°
H38C24C26H4069.5°65.0°
H38C24C26H4149.1°175.0°
H38C24N4C238.2°35.0°
O4C25O5H390.0°0.0°
C27C26H40H41117.8°120.0°
C26C27C28C29180.0°179.8°
C26C27C28C30179.9°180.0°
C26C27C28H420.0°0.1°
C26C27C29C31180.0°179.9°
C26C27C29H430.0°0.0°
H40C26C27C28153.4°30.1°
H40C26C27C2926.6°149.7°
H41C26C27C2834.8°150.0°
H41C26C27C29145.2°29.7°
C27C28C30H42180.0°180.0°
C28C27C29C310.0°0.3°
C28C27C29H43180.0°179.8°
C27C28C30C320.1°0.0°
C27C28C30H44180.0°180.0°
C29C27C28C300.1°0.2°
C29C27C28H42180.0°179.7°
C27C29C31H43180.0°180.0°
C27C29C31C320.0°0.0°
C27C29C31H45180.0°180.0°
C28C30C32H44180.0°179.9°
C28C30C32C310.0°0.3°
C28C30C32H46179.9°180.0°
H42C28C30C32180.0°180.0°
H42C28C30H440.0°0.1°
C29C31C32C300.0°0.2°
C29C31C32H45180.0°179.9°
C29C31C32H46180.0°180.0°
H43C29C31C32180.0°180.0°
H43C29C31H450.0°0.1°
C30C32C31H46180.0°179.8°
C30C32C31H45180.0°179.7°
H44C30C32C31180.0°179.8°
H44C30C32H460.0°0.0°
H45C31C32H460.0°0.0°

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon