Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_001116

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C1sing1.45Å1.45ÅAromatic
C7C1doub1.37Å1.38ÅAromatic
C1C2sing1.47Å1.45Å
O1C2doub1.22Å1.23Å
C6S1sing1.76Å1.69ÅAromatic
S1C7sing1.70Å1.71ÅAromatic
C2N2sing1.35Å1.38Å
N2C3sing1.47Å1.45Å
N2HN2sing0.97Å1.00Å
C8O2doub1.21Å1.23Å
C3C4sing1.51Å1.51Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C7N3sing1.39Å1.38Å
N3C8sing1.35Å1.38Å
N3HN3sing0.97Å1.00Å
C16O3sing1.43Å1.43Å
O3C15sing1.43Å1.43Å
C22C4doub1.38Å1.40ÅAromatic
C4C18sing1.38Å1.40ÅAromatic
C17N4sing1.47Å1.48Å
N4C14sing1.47Å1.48Å
N4C9sing1.47Å1.48Å
C6C5doub1.34Å1.38ÅAromatic
C10C5sing1.52Å1.50Å
C13C6sing1.52Å1.50Å
C8C9sing1.51Å1.53Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C11C10sing1.53Å1.54Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C12C11sing1.53Å1.53Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12C13sing1.53Å1.54Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C15C14sing1.53Å1.53Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C16C17sing1.53Å1.54Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
C18C19doub1.38Å1.40ÅAromatic
C18H18sing1.08Å1.08Å
C20C19sing1.38Å1.39ÅAromatic
C19H19sing1.08Å1.08Å
C21C20doub1.38Å1.39ÅAromatic
C20H20sing1.08Å1.08Å
C22C21sing1.38Å1.40ÅAromatic
C21H21sing1.08Å1.08Å
C22H22sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5C1C7110.7°113.4°
C5C1C2122.7°123.3°
C1C5C6112.1°112.4°
C1C5C10126.3°124.1°
C7C1C2126.5°123.3°
C1C7S1112.4°110.7°
C1C7N3137.3°124.6°
C1C2O1121.8°120.0°
C1C2N2117.4°120.0°
O1C2N2120.5°120.0°
C6S1C792.3°92.7°
S1C6C5112.4°110.8°
S1C6C13122.1°124.9°
S1C7N3110.2°124.7°
C2N2C3128.4°120.0°
C2N2HN2115.8°120.0°
C3N2HN2115.8°120.0°
N2C3C4113.7°109.5°
N2C3H3108.1°109.5°
N2C3H3A108.0°109.5°
O2C8N3126.6°120.0°
O2C8C9121.1°120.0°
C4C3H3108.1°109.4°
C4C3H3A108.1°109.5°
C3C4C22120.3°120.0°
C3C4C18121.1°120.0°
H3C3H3A110.8°109.5°
C7N3C8126.6°120.0°
C7N3HN3116.7°120.0°
C8N3HN3116.7°120.0°
N3C8C9112.3°120.0°
C16O3C15110.0°113.7°
O3C16C17111.2°109.3°
O3C16H16108.9°109.5°
O3C16H16A108.9°109.6°
O3C15C14110.9°109.3°
O3C15H15109.0°109.5°
O3C15H15A109.0°109.5°
C22C4C18118.6°120.0°
C4C22C21120.6°120.0°
C4C22H22119.7°120.0°
C4C18C19120.6°120.0°
C4C18H18119.7°120.0°
C17N4C14109.0°110.8°
C17N4C9112.7°111.0°
N4C17C16111.1°109.2°
N4C17H17108.9°109.5°
N4C17H17A108.9°109.5°
C14N4C9110.1°111.0°
N4C14C15111.2°109.2°
N4C14H14108.9°109.5°
N4C14H14A108.9°109.5°
N4C9C8111.2°109.5°
N4C9H9108.9°109.5°
N4C9H9A108.9°109.5°
C6C5C10121.6°123.5°
C5C6C13125.4°124.3°
C5C10C11111.9°108.8°
C5C10H10108.7°109.6°
C5C10H10A108.7°109.6°
C6C13C12110.6°108.8°
C6C13H13109.1°109.4°
C6C13H13A109.1°109.8°
C8C9H9108.9°109.5°
C8C9H9A108.9°109.5°
H9C9H9A110.0°109.5°
C11C10H10108.7°109.6°
C11C10H10A108.7°109.7°
C10C11C12111.7°109.2°
C10C11H11108.8°109.5°
C10C11H11A108.7°109.5°
H10C10H10A110.2°109.5°
C12C11H11108.7°109.5°
C12C11H11A108.7°109.6°
C11C12C13111.6°109.1°
C11C12H12108.7°109.6°
C11C12H12A108.8°109.5°
H11C11H11A110.2°109.5°
C13C12H12108.8°109.4°
C13C12H12A108.8°109.6°
C12C13H13109.1°109.6°
C12C13H13A109.1°109.6°
H12C12H12A110.2°109.7°
H13C13H13A109.8°109.6°
C15C14H14108.9°109.5°
C15C14H14A108.9°109.5°
C14C15H15109.0°109.5°
C14C15H15A109.0°109.5°
H14C14H14A110.0°109.5°
H15C15H15A110.0°109.5°
C17C16H16108.9°109.5°
C17C16H16A108.9°109.5°
C16C17H17108.9°109.5°
C16C17H17A108.9°109.5°
H16C16H16A110.1°109.5°
H17C17H17A110.0°109.5°
C19C18H18119.7°119.9°
C18C19C20120.1°120.0°
C18C19H19119.9°120.0°
C20C19H19119.9°120.0°
C19C20C21119.9°120.0°
C19C20H20120.1°120.0°
C21C20H20120.1°120.0°
C20C21C22120.1°120.0°
C20C21H21120.0°120.0°
C22C21H21119.9°120.0°
C21C22H22119.7°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5C1C7C2178.9°179.8°
C5C1C2O182.3°90.0°
C1C5C6S10.0°0.0°
C5C1C7S12.9°0.4°
C5C1C2N291.9°90.0°
C5C1C7N3178.2°179.9°
C1C5C6C10179.2°180.0°
C1C5C6C13178.4°179.8°
C1C5C10C11164.3°162.9°
C1C5C10H1044.2°77.3°
C1C5C10H10A75.7°42.9°
C7C1C2O196.5°90.3°
C1C7S1C62.5°0.4°
C1C7S1N3179.2°179.7°
C7C1C2N289.3°89.7°
C1C7N3C84.5°179.6°
C1C7N3HN3175.5°0.3°
C7C1C5C61.9°0.2°
C7C1C5C10177.2°179.7°
C1C2O1N2174.0°180.0°
C2C1C7S1178.2°179.8°
C1C2N2C33.1°180.0°
C1C2N2HN2176.9°0.0°
C2C1C7N30.7°0.2°
C2C1C5C6179.2°180.0°
C2C1C5C101.7°0.0°
O1C2N2C3171.1°0.0°
O1C2N2HN28.9°180.0°
C6S1C7N3178.2°180.0°
S1C6C5C13178.4°179.8°
S1C6C5C10179.1°180.0°
S1C6C13C12165.4°163.4°
S1C6C13H1345.4°76.9°
S1C6C13H13A74.6°43.5°
S1C7N3C8176.5°0.1°
S1C7N3HN33.5°180.0°
C7S1C6C51.4°0.2°
C7S1C6C13179.9°180.0°
C2N2C3HN2180.0°180.0°
C2N2C3C484.5°180.0°
C2N2C3H3155.5°60.0°
C2N2C3H3A35.5°60.0°
N2C3C4H3120.0°120.0°
N2C3C4H3A120.0°120.0°
N2C3H3H3A118.2°120.0°
N2C3C4C22129.5°90.3°
N2C3C4C1852.5°90.0°
HN2N2C3C495.5°0.0°
HN2N2C3H324.5°120.0°
HN2N2C3H3A144.5°120.0°
O2C8N3C74.4°0.0°
O2C8N3C9179.8°180.0°
O2C8N3HN3175.6°180.0°
O2C8C9N470.1°0.0°
O2C8C9H9169.9°120.0°
O2C8C9H9A49.9°120.0°
C4C3H3H3A118.3°120.0°
C3C4C22C18178.0°179.8°
C3C4C18C19178.8°180.0°
C3C4C18H181.2°0.0°
C3C4C22C21179.0°179.7°
C3C4C22H221.0°0.0°
H3C3C4C22110.4°149.7°
H3C3C4C1867.5°30.0°
H3AC3C4C229.6°29.7°
H3AC3C4C18172.5°150.0°
C7N3C8HN3180.0°179.9°
C7N3C8C9175.9°180.0°
N3C8C9N4109.7°180.0°
N3C8C9H910.3°60.0°
N3C8C9H9A130.3°60.0°
HN3N3C8C94.1°0.1°
O3C16C17N457.4°56.8°
C16O3C15C1459.2°58.7°
C16O3C15H15179.2°178.6°
C16O3C15H15A60.8°61.3°
O3C16C17H16120.0°119.9°
O3C16C17H16A120.0°120.0°
O3C16H16H16A119.3°120.2°
O3C16C17H1762.6°63.1°
O3C16C17H17A177.4°176.8°
O3C15C14N458.2°56.9°
O3C15C14H15120.0°119.9°
O3C15C14H15A120.0°120.0°
O3C15C14H14178.1°176.8°
O3C15C14H14A61.9°63.0°
O3C15H15H15A119.4°120.1°
C15O3C16C1758.9°58.6°
C15O3C16H1661.1°61.2°
C15O3C16H16A178.9°178.6°
C22C4C18C190.9°0.2°
C22C4C18H18179.1°179.8°
C4C22C21C200.5°0.5°
C4C22C21H22180.0°179.7°
C4C22C21H21179.5°179.7°
C4C18C19H18180.0°180.0°
C4C18C19C200.3°0.1°
C4C18C19H19179.7°180.0°
C18C4C22C211.0°0.5°
C18C4C22H22179.0°179.8°
C17N4C14C9124.0°123.7°
C17N4C9C870.6°66.4°
C17N4C9H949.3°53.6°
C17N4C9H9A169.4°173.6°
C17N4C14C1554.9°58.6°
C17N4C14H14174.9°178.6°
C17N4C14H14A65.1°61.3°
N4C17C16H17120.0°119.9°
N4C17C16H17A120.0°120.0°
N4C17C16H1662.6°63.1°
N4C17C16H16A177.4°176.8°
N4C17H17H17A119.3°120.1°
C14N4C9C8167.5°170.0°
C14N4C9H972.5°70.0°
C14N4C9H9A47.5°50.0°
N4C14C15H14120.0°120.0°
N4C14C15H14A120.0°119.9°
N4C14H14H14A119.3°120.1°
N4C14C15H15178.1°176.8°
N4C14C15H15A61.8°63.1°
C14N4C17C1654.4°58.6°
C14N4C17H1765.6°61.3°
C14N4C17H17A174.5°178.6°
N4C9C8H9120.0°120.0°
N4C9C8H9A120.0°120.0°
N4C9H9H9A119.3°120.0°
C9N4C14C15179.0°177.6°
C9N4C14H1461.0°57.7°
C9N4C14H14A58.9°62.4°
C9N4C17C16176.9°177.6°
C9N4C17H1757.0°62.5°
C9N4C17H17A63.0°57.7°
C6C5C10C1116.7°17.1°
C6C5C10H10136.7°102.7°
C6C5C10H10A103.3°137.1°
C5C6C13C1216.3°16.4°
C5C6C13H13136.3°103.3°
C5C6C13H13A103.7°136.3°
C10C5C6C132.4°0.2°
C5C10C11H10120.0°119.8°
C5C10C11H10A120.0°119.9°
C5C10H10H10A119.0°120.3°
C5C10C11C1245.1°50.6°
C5C10C11H1174.9°170.5°
C5C10C11H11A165.1°69.4°
C6C13C12C1144.4°49.8°
C6C13C12H13120.0°119.6°
C6C13C12H13A120.0°120.1°
C6C13C12H12164.4°70.1°
C6C13C12H12A75.6°169.7°
C6C13H13H13A119.5°120.5°
C8C9H9H9A119.3°120.0°
C11C10H10H10A119.0°120.4°
C10C11C12H11120.0°119.9°
C10C11C12H11A120.0°120.0°
C10C11H11H11A119.1°120.1°
C10C11C12C1361.0°70.2°
C10C11C12H12179.0°49.5°
C10C11C12H12A59.0°169.8°
H10C10C11C12165.1°69.2°
H10C10C11H1145.1°50.7°
H10C10C11H11A74.9°170.8°
H10AC10C11C1274.9°170.5°
H10AC10C11H11165.1°69.6°
H10AC10C11H11A45.1°50.5°
C12C11H11H11A119.1°120.2°
C11C12C13H12120.0°119.8°
C11C12C13H12A120.0°119.9°
C11C12H12H12A119.1°120.3°
C11C12C13H13164.4°69.8°
C11C12C13H13A75.6°169.9°
H11C11C12C1359.0°169.9°
H11C11C12H1261.0°70.4°
H11C11C12H12A179.0°50.0°
H11AC11C12C13179.0°49.8°
H11AC11C12H1259.0°169.5°
H11AC11C12H12A61.0°70.2°
C13C12H12H12A119.1°120.2°
C12C13H13H13A119.6°120.3°
H12C12C13H1375.6°170.4°
H12C12C13H13A44.4°50.0°
H12AC12C13H1344.4°50.1°
H12AC12C13H13A164.4°70.2°
C15C14H14H14A119.3°120.1°
C14C15H15H15A119.4°120.1°
H14C14C15H1561.9°63.3°
H14C14C15H15A58.1°56.9°
H14AC14C15H1558.1°56.8°
H14AC14C15H15A178.1°177.0°
C17C16H16H16A119.3°120.1°
C16C17H17H17A119.3°120.1°
H16C16C17H17177.4°177.0°
H16C16C17H17A57.4°56.9°
H16AC16C17H1757.4°56.9°
H16AC16C17H17A62.6°63.2°
C18C19C20H19180.0°179.9°
C18C19C20C210.2°0.1°
C18C19C20H20179.8°180.0°
H18C18C19C20179.7°180.0°
H18C18C19H190.3°0.0°
C19C20C21H20180.0°180.0°
C19C20C21C220.1°0.3°
C19C20C21H21179.9°180.0°
H19C19C20C21179.8°180.0°
H19C19C20H200.2°0.0°
C20C21C22H21180.0°179.7°
C20C21C22H22179.5°179.8°
H20C20C21C22179.9°179.7°
H20C20C21H210.1°0.0°
H21C21C22H220.5°0.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon