Author results

1IOK
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CRYSTAL STRUCTURE OF CHAPERONIN-60 FROM PARACOCCUS DENITRIFICANS
Descriptor:CHAPERONIN 60
Authors:Fukami, T.A., Yohda, M., Taguchi, H., Yoshida, M., Miki, K.
Deposit date:2001-03-16
Release date:2001-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of chaperonin-60 from Paracoccus denitrificans.
J.Mol.Biol., 312, 2001
1Q2V
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CRYSTAL STRUCTURE OF THE CHAPERONIN FROM THERMOCOCCUS STRAIN KS-1 (NUCLEOTIDE-FREE FORM)
Descriptor:Thermosome alpha subunit, SULFATE ION
Authors:Shomura, Y., Yoshida, T., Iizuka, R., Yohda, M., Maruyama, T., Miki, K.
Deposit date:2003-07-26
Release date:2004-01-27
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms.
J.Mol.Biol., 335, 2004
1Q3Q
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CRYSTAL STRUCTURE OF THE CHAPERONIN FROM THERMOCOCCUS STRAIN KS-1 (TWO-POINT MUTANT COMPLEXED WITH AMP-PNP)
Descriptor:Thermosome alpha subunit, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Shomura, Y., Yoshida, T., Iizuka, R., Maruyama, T., Yohda, M., Miki, K.
Deposit date:2003-07-31
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms.
J.Mol.Biol., 335, 2004
1Q3R
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CRYSTAL STRUCTURE OF THE CHAPERONIN FROM THERMOCOCCUS STRAIN KS-1 (NUCLEOTIDE-FREE FORM OF SINGLE MUTANT)
Descriptor:Thermosome alpha subunit, SULFATE ION
Authors:Shomura, Y., Yoshida, T., Iizuka, R., Maruyama, T., Yohda, M., Miki, K.
Deposit date:2003-07-31
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms.
J.Mol.Biol., 335, 2004
1Q3S
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CRYSTAL STRUCTURE OF THE CHAPERONIN FROM THERMOCOCCUS STRAIN KS-1 (FORMIII CRYSTAL COMPLEXED WITH ADP)
Descriptor:Thermosome alpha subunit, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Shomura, Y., Yoshida, T., Iizuka, R., Maruyama, T., Yohda, M., Miki, K.
Deposit date:2003-07-31
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms.
J.Mol.Biol., 335, 2004
2AHJ
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NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE
Descriptor:NITRILE HYDRATASE, FE (III) ION, ZINC ION, ...
Authors:Nagashima, S., Nakasako, M., Dohmae, N., Tsujimura, M., Takio, K., Odaka, M., Yohda, M., Kamiya, N., Endo, I.
Deposit date:1997-12-24
Release date:1999-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
Nat.Struct.Biol., 5, 1998
2ZCF
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MUTATIONAL STUDY ON ALPHA-GLN90 OF FE-TYPE NITRILE HYDRATASE FROM RHODOCOCCUS SP. N771
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Takarada, H., Kawano, Y., Hashimoto, K., Nakayama, H., Ueda, S., Yohda, M., Kamiya, N., Dohmae, N., Maeda, M., Odaka, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
3VYG
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CRYSTAL STRUCTURE OF THIOCYANATE HYDROLASE MUTANT R136W
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Yamanaka, Y., Sato, M., Arakawa, T., Namima, S., Hori, S., Ohtaki, A., Noguchi, K., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3VYH
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CRYSTAL STRUCTURE OF AW116R MUTANT OF NITRILE HYDRATASE FROM PSEUDONOCARDIA THERMOPHILLA
Descriptor:Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta, COBALT (II) ION
Authors:Yamanaka, Y., Sato, M., Arakawa, T., Namima, S., Hori, S., Ohtaki, A., Noguchi, K., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
5B19
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PICROPHILUS TORRIDUS ASPARTATE RACEMASE
Descriptor:Aspartate racemase, L(+)-TARTARIC ACID
Authors:Aihara, T., Ito, T., Yamanaka, Y., Noguchi, K., Odaka, M., Sekine, M., Homma, H., Yohda, M.
Deposit date:2015-11-30
Release date:2016-06-22
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structural and functional characterization of aspartate racemase from the acidothermophilic archaeon Picrophilus torridus
Extremophiles, 20, 2016
2DD4
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THIOCYANATE HYDROLASE (SCNASE) FROM THIOBACILLUS THIOPARUS RECOMBINANT APO-ENZYME
Descriptor:Thiocyanate hydrolase alpha subunit, Thiocyanate hydrolase beta subunit, Thiocyanate hydrolase gamma subunit, ...
Authors:Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DD5
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THIOCYANATE HYDROLASE (SCNASE) FROM THIOBACILLUS THIOPARUS NATIVE HOLO-ENZYME
Descriptor:Thiocyanate hydrolase alpha subunit, Thiocyanate hydrolase beta subunit, Thiocyanate hydrolase gamma subunit, ...
Authors:Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DX7
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII OT3 ASPARTATE RACEMASE COMPLEX WITH CITRIC ACID
Descriptor:aspartate racemase, CITRIC ACID
Authors:Ohtaki, A., Arakawa, T., Iizuka, R., Odaka, M., Yohda, M.
Deposit date:2006-08-24
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism.
Proteins, 70, 2008
2DXB
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RECOMBINANT THIOCYANATE HYDROLASE COMPRISING PARTIALLY-MODIFIED COBALT CENTERS
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2006-08-25
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
2DXC
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RECOMBINANT THIOCYANATE HYDROLASE, FULLY-MATURED FORM
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2006-08-25
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
2ZPB
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NITROSYLATED FE-TYPE NITRILE HYDRATASE
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-09
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPE
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NITROSYLATED FE-TYPE NITRILE HYDRATASE WITH TERT-BUTYLISONITRILE
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-10
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPF
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COMPLEX OF FE-TYPE NITRILE HYDRATASE WITH TERT-BUTYLISONITRILE, PHOTO-ACTIVATED FOR 18MIN AT 293K
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-11
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPG
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COMPLEX OF FE-TYPE NITRILE HYDRATASE WITH TERT-BUTYLISONITRILE, PHOTO-ACTIVATED FOR 120MIN AT 293K
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-11
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPH
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COMPLEX OF FE-TYPE NITRILE HYDRATASE WITH TERT-BUTYLISONITRILE, PHOTO-ACTIVATED FOR 340MIN AT 293K
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-11
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPI
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COMPLEX OF FE-TYPE NITRILE HYDRATASE WITH TERT-BUTYLISONITRILE, PHOTO-ACTIVATED FOR 440MIN AT 293K
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Hashimoto, K., Suzuki, H., Taniguchi, K., Noguchi, T., Yohda, M., Odaka, M.
Deposit date:2008-07-11
Release date:2008-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.491 Å)
Cite:Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZZD
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RECOMBINANT THIOCYANATE HYDROLASE, AIR-OXIDIZED FORM OF HOLO-ENZYME
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2009-02-09
Release date:2009-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-02
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3A1I
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CRYSTAL STRUCTURE OF RHODOCOCCUS SP. N-771 AMIDASE COMPLEXED WITH BENZAMIDE
Descriptor:Amidase, BENZAMIDE
Authors:Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition
Biochim.Biophys.Acta, 2009