Author results

5GYR
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TETRAMERIC ALLOCHROMATIUM VINOSUM CYTOCHROME C'
Descriptor:Cytochrome c', HEME C
Authors:Yamanaka, M., Hoshizumi, M., Nagao, S., Nakayama, R., Shibata, N., Higuchi, Y., Hirota, S.
Deposit date:2016-09-23
Release date:2017-02-08
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers
Protein Sci., 26, 2017
3X15
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DIMERIC AQUIFEX AEOLICUS CYTOCHROME C555
Descriptor:Cytochrome c552, HEME C
Authors:Yamanaka, M., Nagao, S., Komori, H., Higuchi, Y., Hirota, S.
Deposit date:2014-10-29
Release date:2015-01-28
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping
Protein Sci., 24, 2015
1IVO
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CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTH FACTOR AND RECEPTOR EXTRACELLULAR DOMAINS.
Descriptor:Epidermal Growth Factor Receptor, Epidermal growth factor, N-ACETYL-D-GLUCOSAMINE
Authors:Ogiso, H., Ishitani, R., Nureki, O., Fukai, S., Yamanaka, M., Kim, J.H., Saito, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-28
Release date:2002-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.
Cell(Cambridge,Mass.), 110, 2002
2ZXY
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CRYSTAL STRUCTURE OF CYTOCHROME C555 FROM AQUIFEX AEOLICUS
Descriptor:Cytochrome c552, HEME C
Authors:Obuchi, M., Kawahara, K., Motooka, D., Nakamura, S., Yamanaka, M., Takeda, T., Uchiyama, S., Kobayashi, Y., Ohkubo, T., Sambongi, Y.
Deposit date:2009-01-09
Release date:2009-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hyperstability and crystal structure of cytochrome c(555) from hyperthermophilic Aquifex aeolicus
Acta Crystallogr.,Sect.D, 65, 2009
3WUI
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DIMERIC HORSE CYTOCHROME C FORMED BY REFOLDING FROM MOLTEN GLOBULE STATE
Descriptor:Cytochrome c, HEME C, TETRAETHYLENE GLYCOL, ...
Authors:Deshpande, M.S., Parui, P.P., Kamikubo, H., Yamanaka, M., Nagao, S., Komori, H., Kataoka, M., Higuchi, Y., Hirota, S.
Deposit date:2014-04-25
Release date:2014-07-16
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer
Biochemistry, 2014
5B3I
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HOMO-DIMERIC STRUCTURE OF CYTOCHROME C' FROM THERMOPHILIC HYDROGENOPHILUS THERMOLUTEOLUS
Descriptor:Cytochrome c prime, HEME C
Authors:Fujii, S., Oki, H., Kawahara, K., Yamane, D., Yamanaka, M., Maruno, T., Kobayashi, Y., Masanari, M., Wakai, S., Nishihara, H., Ohkubo, T., Sambongi, Y.
Deposit date:2016-02-29
Release date:2017-03-01
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and functional insights into thermally stable cytochrome c' from a thermophile
Protein Sci., 26, 2017
5XEC
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HETERODIMER CONSTRUCTED FROM PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-552,Cytochrome c-551, Cytochrome c-551,Cytochrome c-552, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5XED
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HETERODIMER CONSTRUCTED FROM M61A PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
4ZID
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DIMERIC HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 OBTAINED FROM ESCHERICHIA COLI
Descriptor:Cytochrome c-552, HEME C
Authors:Hayashi, Y., Yamanaka, M., Nagao, S., Komori, H., Higuchi, Y., Hirota, S.
Deposit date:2015-04-28
Release date:2016-02-10
Last modified:2016-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells
Sci Rep, 6, 2016
5AUR
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HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 DIMER FORMED BY DOMAIN SWAPPING AT N-TERMINAL REGION
Descriptor:Cytochrome c-552, HEME C, IODIDE ION
Authors:Ren, C., Nagao, S., Yamanaka, M., Kamikubo, H., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2015-11-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
5AUS
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HYDROGENOBACTER THERMOPHILUS CYTOCHROME C552 DIMER FORMED BY DOMAIN SWAPPING AT C-TERMINAL REGION
Descriptor:Cytochrome c-552, HEME C
Authors:Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2015-11-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
5Z25
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TRIMERIC ALPHA-HELIX-INSERTED CIRCULAR PERMUTANT OF CYTOCHROME C555
Descriptor:Cytochrome c552, HEME C, TETRAETHYLENE GLYCOL
Authors:Oda, A., Nagao, S., Yamanaka, M., Ueda, I., Shibata, N., Higuchi, Y., Hirota, S.
Deposit date:2017-12-28
Release date:2018-03-07
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555.
Chem Asian J, 13, 2018
6K7C
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DIMERIC SHEWANELLA VIOLACEA CYTOCHROME C5
Descriptor:Soluble cytochrome cA, HEME C, NITRATE ION
Authors:Yang, H., Yamanaka, M., Nagao, S., Yasuhara, K., Shibata, N., Higuchi, Y., Hirota, S.
Deposit date:2019-06-07
Release date:2019-09-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
1NDH
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CRYSTAL STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE FROM PIG LIVER AT 2.4 ANGSTROMS RESOLUTION
Descriptor:CYTOCHROME B5 REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nishida, H., Miki, K.
Deposit date:1994-10-31
Release date:1995-02-14
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-cytochrome b5 reductase from pig liver at 2.4 A resolution.
Biochemistry, 34, 1995
3VOK
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM WITH THE TARGET DNA.
Descriptor:Transcriptional regulator, 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3'
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-01-27
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VOX
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM
Descriptor:Transcriptional regulator
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VP5
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE HOLO FORM
Descriptor:Transcriptional regulator, PROTOPORPHYRIN IX CONTAINING FE, CACODYLATE ION
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
6AIS
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LOOP DELETION MUTANT (DELETING TWO RESIDUES)
Descriptor:Outer surface protein A
Authors:Shiga, S., Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6ICS
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LOOP DELETION MUTANT (DELETING FOUR RESIDUES)
Descriptor:Outer surface protein A
Authors:Shiga, S., Makabe, K.
Deposit date:2018-09-06
Release date:2019-07-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IDC
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LOOP DELETION AND PROLINE INSERTION MUTANT (DELETING SIX RESIDUES AND INSERTED SIX PROLINE RESIDUES)
Descriptor:Outer surface protein A
Authors:Shiga, S., Makabe, K.
Deposit date:2018-09-09
Release date:2019-07-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IEI
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LOOP DELETION AND PROLINE INSERTION MUTANT (DELETING SIX RESIDUES AND INSERTED FIVE PROLINE RESIDUES)
Descriptor:Outer surface protein A
Authors:Shiga, S., Makabe, K.
Deposit date:2018-09-14
Release date:2019-07-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IYS
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LOOP DELETION AND PROLINE INSERTION MUTANT (DELETING SIX RESIDUES AND INSERTED THREE PROLINE RESIDUES)
Descriptor:Outer surface protein A
Authors:Shiga, S., Makabe, K.
Deposit date:2018-12-17
Release date:2019-07-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019