Author results

5BWF
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CRYSTAL STRUCTURE OF THE BETA-GLUCOSIDASE FROM TRICHODERMA HARZIANUM
Descriptor:Beta-1,4-glucosidase, GLYCEROL, SULFATE ION
Authors:Santos, C.A., Zanphorlin, L.M., Crucello, A., Tonoli, C.C.C., Ruller, R., Souza, A.P., Murakami, M.T.
Deposit date:2015-06-07
Release date:2016-07-06
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the beta-glucosidase from Trichoderma harzianum
To Be Published
5KB5
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CRYSTAL STRUCTURE OF THE ADENOSINE KINASE FROM MUS MUSCULUS IN COMPLEX WITH ADENOSINE AND ADENOSINE-DIPHOSPHATE
Descriptor:Adenosine kinase, ADENOSINE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Oliveira, R.R., Neto, R.M., Polo, C.C., Tonoli, C.C.C., Murakami, M.T., Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
To Be Published
5KB6
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HIGH-RESOLUTION STRUCTURE OF THE ADENOSINE KINASE FROM MUS MUSCULUS IN COMPLEX WITH ADENOSINE
Descriptor:Adenosine kinase, ADENOSINE, SULFATE ION, ...
Authors:Oliveira, R.R., Neto, R.M., Polo, C.C., Tonoli, C.C.C., Murakami, M.T., Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
To Be Published
5WKA
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CRYSTAL STRUCTURE OF A GH1 BETA-GLUCOSIDASE RETRIEVED FROM MICROBIAL METAGENOME OF PORAQUE AMAZON LAKE
Descriptor:Beta-glucosidase, GLYCEROL, DI(HYDROXYETHYL)ETHER
Authors:Morais, M.A.B., Toyama, D., Ramos, F.C., Zanphorlin, L.M., Tonoli, C.C.C., Miranda, F.P., Ruller, R., Henrique-Silva, F., Murakami, M.T.
Deposit date:2017-07-24
Release date:2018-03-07
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A novel beta-glucosidase isolated from the microbial metagenome of Lake Poraque (Amazon, Brazil).
Biochim. Biophys. Acta, 1866, 2018
6D25
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CRYSTAL STRUCTURE OF THE GH51 ARABINOFURANOSIDASE FROM XANTHOMONAS AXONOPODIS PV. CITRI
Descriptor:Alpha-L-arabinosidase, GLYCEROL
Authors:Santos, C.R., Morais, M.A.B., Tonoli, C.C.C., Giuseppe, P.O., Murakami, M.T.
Deposit date:2018-04-13
Release date:2019-02-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Biotechnol Biofuels, 11, 2018
3GBO
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CRYSTAL STRUCTURE OF BMOOMPALPHA-I, A NON-HEMORRHAGIC METALLOPROTEINASE ISOLATED FROM BOTHROPS MOOJENI SNAKE VENOM
Descriptor:Zinc metalloproteinase BmooMPalfa-I, CALCIUM ION, ZINC ION
Authors:Akao, P.K., Tonoli, C.C.C., Murakami, M.T.
Deposit date:2009-02-20
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural studies of BmooMPalpha-I, a non-hemorrhagic metalloproteinase from Bothrops moojeni venom.
Toxicon, 55, 2010
3N8T
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NATIVE STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS
Descriptor:alpha-amylase, GH57 family, DI(HYDROXYETHYL)ETHER, ...
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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CRYSTAL STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS, IN COMPLEX WITH GLUCOSE
Descriptor:alpha-amylase, GH57 family, BETA-D-GLUCOSE
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N98
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CRYSTAL STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS, IN COMPLEX WITH GLUCOSE AND ADDITIVES
Descriptor:alpha-amylase, GH57 family, BETA-D-GLUCOSE, ...
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3NGR
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CRYSTAL STRUCTURE OF LEISHMANIA NUCLEOSIDE DIPHOSPHATE KINASE B WITH UNORDERED NUCLEOTIDE-BINDING LOOP.
Descriptor:Nucleoside diphosphate kinase, PHOSPHATE ION
Authors:Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.
Deposit date:2010-06-13
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
3NGS
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STRUCTURE OF LEISHMANIA NUCLEOSIDE DIPHOSPHATE KINASE B WITH ORDERED NUCLEOTIDE-BINDING LOOP
Descriptor:Nucleoside diphosphate kinase, PHOSPHATE ION, 2,3-DIHYDROXY-1,4-DITHIOBUTANE
Authors:Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.
Deposit date:2010-06-13
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
3NGT
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STRUCTURE OF LEISHMANIA NDKB COMPLEXED WITH AMP.
Descriptor:Nucleoside diphosphate kinase, ADENOSINE MONOPHOSPHATE
Authors:Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.
Deposit date:2010-06-13
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
3NGU
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STRUCTURE OF LEISHMANIA NDKB COMPLEXED WITH ADP.
Descriptor:Nucleoside diphosphate kinase, ADENOSINE-5'-DIPHOSPHATE
Authors:Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.
Deposit date:2010-06-13
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
3O5S
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CRYSTAL STRUCTURE OF THE ENDO-BETA-1,3-1,4 GLUCANASE FROM BACILLUS SUBTILIS (STRAIN 168)
Descriptor:Beta-glucanase, CALCIUM ION, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Santos, C.R., Tonoli, C.C.C., Souza, A.R., Furtado, G.P., Ribeiro, L.F., Ward, R.J., Murakami, M.T.
Deposit date:2010-07-28
Release date:2011-07-13
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biochemical and structural characterization of a Beta-1,3 1,4-glucanase from Bacillus subtilis 168
PROCESS BIOCHEM, 46, 2011
3PRV
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NUCLEOSIDE DIPHOSPHATE KINASE B FROM TRYPANOSOMA CRUZI
Descriptor:Nucleoside diphosphate kinase
Authors:Souza, T.A.C.B., Trindade, D.M., Tonoli, C.C.C., Santos, C.R., Oliveira, A.H.C., Murakami, M.T.
Deposit date:2010-11-30
Release date:2011-05-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
4J5L
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VA
Descriptor:Unconventional myosin-Va, SULFATE ION
Authors:Nascimento, A.F.Z., Trindade, D.M., Tonoli, C.C.C., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4J5M
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VB
Descriptor:Unconventional myosin-Vb, NITRATE ION
Authors:Nascimento, A.F.Z., Trindade, D.M., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Tonoli, C.C.C., Assis, L.H.P., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4L8T
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VC
Descriptor:Unconventional myosin-Vc
Authors:Nascimento, A.F.Z., Tonoli, C.C.C., Trindade, D.M., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-06-17
Release date:2013-10-09
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4M1R
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STRUCTURE OF A NOVEL CELLULASE 5 FROM A SUGARCANE SOIL METAGENOMIC LIBRARY
Descriptor:Cellulase 5, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Paiva, J.H., Alvarez, T.M., Cairo, J.P., Paixao, D.A., Almeida, R.A., Tonoli, C.C.C., Ruiz, D.M., Ruller, R., Santos, C.R., Squina, F.M., Murakami, M.T.
Deposit date:2013-08-03
Release date:2014-02-05
Last modified:2014-09-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
5DT5
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CRYSTAL STRUCTURE OF THE GH1 BETA-GLUCOSIDASE FROM EXIGUOBACTERIUM ANTARCTICUM B7 IN SPACE GROUP P21
Descriptor:Beta-glucosidase, SULFATE ION
Authors:Zanphorlin, L.M., Giuseppe, P.O., Tonoli, C.C.C., Murakami, M.T.
Deposit date:2015-09-17
Release date:2016-04-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7.
Sci Rep, 6, 2016
5DT7
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CRYSTAL STRUCTURE OF THE GH1 BETA-GLUCOSIDASE FROM EXIGUOBACTERIUM ANTARCTICUM B7 IN SPACE GROUP C2221
Descriptor:Beta-glucosidase, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, SULFATE ION, ...
Authors:Zanphorlin, L.M., Giuseppe, P.O., Tonoli, C.C.C., Murakami, M.T.
Deposit date:2015-09-17
Release date:2016-04-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7.
Sci Rep, 6, 2016