Author results

2RSY
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SOLUTION STRUCTURE OF THE SH2 DOMAIN OF CSK IN COMPLEX WITH A PHOSPHOPEPTIDE FROM CBP
Descriptor:Tyrosine-protein kinase CSK, Phosphoprotein associated with glycosphingolipid-enriched microdomains 1
Authors:Tanaka, H., Akagi, K., Oneyama, C., Tanaka, M., Sasaki, Y., Kanou, T., Lee, Y., Yokogawa, D., Debenecker, M., Nakagawa, A., Okada, M., Ikegami, T.
Deposit date:2012-09-10
Release date:2013-04-10
Method:SOLUTION NMR
Cite:Identification of a new interaction mode between the Src homology 2 (SH2) domain of C-terminal Src kinase (Csk) and Csk-binding protein (Cbp)/phosphoprotein associated with glycosphingolipid microdomains (PAG)
J.Biol.Chem., 2013
5WR7
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CRYSTAL STRUCTURE OF TRK-A COMPLEXED WITH A SELECTIVE INHIBITOR CH7057288
Descriptor:High affinity nerve growth factor receptor, N-tert-butyl-2-[2-[6,6-dimethyl-8-(methylsulfonylamino)-11-oxidanylidene-naphtho[2,3-b][1]benzofuran-3-yl]ethynyl]-6-methyl-pyridine-4-carboxamide
Authors:Tanaka, H., Blaesse, M., Augustin, M., Goesser, C.
Deposit date:2016-11-30
Release date:2017-12-06
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Selective TRK Inhibitor CH7057288 against TRK Fusion-Driven Cancer.
Mol. Cancer Ther., 17, 2018
1IOF
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X-RAY CRYSTALLINE STRUCTURES OF PYRROLIDONE CARBOXYL PEPTIDASE FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS, AND ITS CYS-FREE MUTANT
Descriptor:PYRROLIDONE CARBOXYL PEPTIDASE
Authors:Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.
Deposit date:2001-03-09
Release date:2001-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus, and its cys-free mutant
J.BIOCHEM.(TOKYO), 130, 2001
1IOI
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X-RAY CRYSTALLINE STRUCTURES OF PYRROLIDONE CARBOXYL PEPTIDASE FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS, AND ITS CYS-FREE MUTANT
Descriptor:PYRROLIDONE CARBOXYL PEPTIDASE
Authors:Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.
Deposit date:2001-03-09
Release date:2001-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus, and its cys-free mutant
J.BIOCHEM.(TOKYO), 130, 2001
3ANU
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CRYSTAL STRUCTURE OF D-SERINE DEHYDRATASE FROM CHICKEN KIDNEY
Descriptor:D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE, CHLORIDE ION, ...
Authors:Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
Deposit date:2010-09-09
Release date:2011-06-15
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney
J.Biol.Chem., 286, 2011
3ANV
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CRYSTAL STRUCTURE OF D-SERINE DEHYDRATASE FROM CHICKEN KIDNEY (2,3-DAP COMPLEX)
Descriptor:D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE, CHLORIDE ION, ...
Authors:Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
Deposit date:2010-09-09
Release date:2011-06-15
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney
J.Biol.Chem., 286, 2011
3ASI
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ALPHA-NEUREXIN-1 ECTODOMAIN FRAGMENT; LNS5-EGF3-LNS6
Descriptor:Neurexin-1-alpha, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tanaka, H., Nogi, T., Yasui, N., Takagi, J.
Deposit date:2010-12-13
Release date:2011-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
Plos One, 6, 2011
3AWN
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CRYSTAL STRUCTURE OF D-SERINE DEHYDRATASE FROM CHICKEN KIDNEY (EDTA TREATED)
Descriptor:D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE
Authors:Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
Deposit date:2011-03-25
Release date:2011-06-15
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney.
J.Biol.Chem., 286, 2011
3AWO
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CRYSTAL STRUCTURE OF D-SERINE DEHYDRATASE IN COMPLEX WITH D-SERINE FROM CHICKEN KIDNEY (EDTA-TREATED)
Descriptor:D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE, D-SERINE
Authors:Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
Deposit date:2011-03-25
Release date:2011-06-15
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney.
J.Biol.Chem., 286, 2011
3VKF
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CRYSTAL STRUCTURE OF NEUREXIN 1BETA/NEUROLIGIN 1 COMPLEX
Descriptor:Neuroligin-1, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
Deposit date:2011-11-15
Release date:2012-08-01
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin.
Cell Rep, 2, 2012
4V60
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THE STRUCTURE OF RAT LIVER VAULT AT 3.5 ANGSTROM RESOLUTION
Descriptor:Major vault protein
Authors:Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
Deposit date:2008-10-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structure of rat liver vault at 3.5 angstrom resolution
Science, 323, 2009
1A05
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CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE, MAGNESIUM ION, 3-ISOPROPYLMALIC ACID
Authors:Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.
Deposit date:1997-12-09
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.
Structure, 6, 1998
1GC0
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
1GC2
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
2E1X
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NMR STRUCTURE OF THE HIV-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION
Authors:Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.
Deposit date:2006-11-03
Release date:2007-06-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality
Biochem.Biophys.Res.Commun., 358, 2007
2EC7
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SOLUTION STRUCTURE OF HUMAN IMMUNODIFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag polyprotein (Pr55Gag), ZINC ION
Authors:Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.
Deposit date:2007-02-10
Release date:2008-02-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
Biochemistry, 48, 2009
4Y04
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE 11 (DPP11) FROM PORPHYROMONAS GINGIVALIS (SPACE)
Descriptor:Peptidase S46, POTASSIUM ION, GLYCEROL
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Inaka, K., Tanaka, H., Yamada, M., Ohta, K., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2015-02-05
Release date:2015-07-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5, 2015
3KLR
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BOVINE H-PROTEIN AT 0.88 ANGSTROM RESOLUTION
Descriptor:Glycine cleavage system H protein, SULFATE ION, GLYCEROL
Authors:Higashiura, A., Kurakane, T., Matsuda, M., Suzuki, M., Inaka, K., Sato, M., Tanaka, H., Fujiwara, K., Nakagawa, A.
Deposit date:2009-11-09
Release date:2010-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution
Acta Crystallogr.,Sect.D, 66, 2010
3X2L
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X-RAY STRUCTURE OF PCCEL45A APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
1C1B
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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GCA-186
Descriptor:HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN), HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN), 6-(3',5'-DIMETHYLBENZYL)-1-ETHOXYMETHYL-5-ISOPROPYLURACIL
Authors:Hopkins, A.L., Ren, J., Tanaka, H., Baba, B., Okamato, M., Stuart, D.I., Stammers, D.K.
Deposit date:1999-07-21
Release date:2000-07-21
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants.
J.Med.Chem., 42, 1999
1C1C
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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-6123
Descriptor:HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN), HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN), 6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione
Authors:Hopkins, A.L., Ren, J., Tanaka, H., Baba, M., Okamato, M., Stuart, D.I., Stammers, D.K.
Deposit date:1999-07-21
Release date:2000-07-21
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants.
J.Med.Chem., 42, 1999
1V66
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SOLUTION STRUCTURE OF HUMAN P53 BINDING DOMAIN OF PIAS-1
Descriptor:Protein inhibitor of activated STAT protein 1
Authors:Okubo, S., Hara, F., Tsuchida, Y., Shimotakahara, S., Suzuki, S., Hatanaka, H., Yokoyama, S., Tanaka, H., Yasuda, H., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-27
Release date:2004-12-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of SUMO ligase PIAS1 and its interaction with tumor suppressor p53 and A/T-rich DNA oligomers
J.Biol.Chem., 279, 2004
4HL8
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RE-REFINEMENT OF THE VAULT RIBONUCLEOPROTEIN PARTICLE
Descriptor:Major vault protein
Authors:Casanas, A., Querol-Audi, J., Guerra, P., Pous, J., Tanaka, H., Tsukihara, T., Verdaguer, V., Fita, I.
Deposit date:2012-10-16
Release date:2013-06-05
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach.
Acta Crystallogr.,Sect.D, 69, 2013
1WUA
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THE STRUCTURE OF APLYRONINE A-ACTIN COMPLEX
Descriptor:Actin, alpha skeletal muscle, CALCIUM ION, ...
Authors:Hirata, K., Muraoka, S., Suenaga, K., Kuroda, T., Kato, K., Tanaka, H., Yamamoto, M., Takata, M., Yamada, K., Kigoshi, H.
Deposit date:2004-12-03
Release date:2006-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure basis for antitumor effect of aplyronine a
J.Mol.Biol., 356, 2006
5GZT
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, SODIUM ION, PHOSPHATE ION, ...
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
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