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3KDO
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BU of 3kdo by Molmil
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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BU of 3kdn by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
4M80
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BU of 4m80 by Molmil
The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans at 1.85A resolution
Descriptor: EXO-1,3-BETA-GLUCANASE
Authors:Nakatani, Y, Cutfield, S.M, Larsen, D.S, Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
2KZB
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BU of 2kzb by Molmil
Solution structure of alpha-mannosidase binding domain of Atg19
Descriptor: Autophagy-related protein 19
Authors:Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F.
Deposit date:2010-06-15
Release date:2010-07-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
3R7N
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BU of 3r7n by Molmil
Caspase-2 bound with two copies of Ac-DVAD-CHO
Descriptor: Caspase-2 subunit p12, Caspase-2 subunit p18, Peptide Inhibitor (ACE)DVAD-CHO
Authors:Tang, Y, Wells, J, Arkin, M.
Deposit date:2011-03-22
Release date:2011-07-27
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural and enzymatic insights into caspase-2 protein substrate recognition and catalysis.
J.Biol.Chem., 286, 2011
2KVT
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BU of 2kvt by Molmil
solution NMR structure of yaiA from Escherichia Eoli. Northeast Structural Genomics Target ER244
Descriptor: Uncharacterized protein yaiA
Authors:Tang, Y, Chen, X, Ciccosanti, C, Janjua, H, Xiao, R, Acton, T, Everett, J, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-03-28
Release date:2010-05-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:solution NMR structure of yaiA from Escherichia coli. Northeast Structural Genomics Target ER244
To be Published
2LNI
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BU of 2lni by Molmil
Solution NMR Structure of Stress-induced-phosphoprotein 1 STI1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4403E
Descriptor: Stress-induced-phosphoprotein 1
Authors:Tang, Y, Liu, G, Hamilton, K, Ciccosanti, C, Shastry, R, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-12-28
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target HR4403E
To be Published
5X3I
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BU of 5x3i by Molmil
Kfla1895 D451A mutant
Descriptor: GLYCEROL, Glycoside hydrolase family 31, SULFATE ION
Authors:Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
Deposit date:2017-02-06
Release date:2018-02-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Glycoside hydrolase mutant
To Be Published
5X3J
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BU of 5x3j by Molmil
Kfla1895 D451A mutant in complex with cyclobis-(1->6)-alpha-nigerosyl
Descriptor: Cyclic alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, GLYCEROL, Glycoside hydrolase family 31, ...
Authors:Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
Deposit date:2017-02-06
Release date:2018-02-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Glycoside hydrolase mutant in complex with substrate
To Be Published
5XSW
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BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
8HP3
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BU of 8hp3 by Molmil
Crystal structure of meso-diaminopimelate dehydrogenase from Prevotella timonensis
Descriptor: 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Tan, Y, Song, W.
Deposit date:2022-12-11
Release date:2023-12-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Rational Design of Meso -Diaminopimelate Dehydrogenase with Enhanced Reductive Amination Activity for Efficient Production of d- p -Hydroxyphenylglycine.
Appl.Environ.Microbiol., 89, 2023
8HP0
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BU of 8hp0 by Molmil
Crystal structure of meso-diaminopimelate dehydrogenase from Prevotella timonensis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Meso-diaminopimelate D-dehydrogenase, SULFATE ION
Authors:Tan, Y, Song, W.
Deposit date:2022-12-11
Release date:2023-12-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Rational Design of Meso -Diaminopimelate Dehydrogenase with Enhanced Reductive Amination Activity for Efficient Production of d- p -Hydroxyphenylglycine.
Appl.Environ.Microbiol., 89, 2023
5ZOI
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BU of 5zoi by Molmil
Crystal Structure of alpha1,3-Fucosyltransferase
Descriptor: Alpha-(1,3)-fucosyltransferase FucT, [[(2S,3R,4S,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5R,6R)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
Authors:Tan, Y, Yang, G.
Deposit date:2018-04-13
Release date:2019-06-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Directed evolution of an alpha 1,3-fucosyltransferase using a single-cell ultrahigh-throughput screening method.
Sci Adv, 5, 2019
7X5H
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BU of 7x5h by Molmil
Serotonin 5A (5-HT5A) receptor-Gi protein complex
Descriptor: 3-(2-azanylethyl)-1H-indole-5-carboxamide, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Tan, Y, Xu, P, Huang, S, Xu, H.E, Jiang, Y.
Deposit date:2022-03-04
Release date:2022-09-14
Last modified:2022-09-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into the ligand binding and G i coupling of serotonin receptor 5-HT 5A .
Cell Discov, 8, 2022
2DSO
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BU of 2dso by Molmil
Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Descriptor: CALCIUM ION, Drp35, GLYCEROL
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-07-04
Release date:2006-12-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
1C4L
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BU of 1c4l by Molmil
SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
Authors:Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
2DG0
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BU of 2dg0 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Descriptor: DrP35
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
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BU of 2dg1 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+
Descriptor: CALCIUM ION, DrP35, GLYCEROL
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DGJ
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BU of 2dgj by Molmil
Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus
Descriptor: ACETIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-14
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
1J08
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BU of 1j08 by Molmil
Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii
Descriptor: glutaredoxin-like protein
Authors:Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I.
Deposit date:2002-11-11
Release date:2003-05-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
2DGD
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BU of 2dgd by Molmil
Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
Descriptor: 223aa long hypothetical arylmalonate decarboxylase, GLYCEROL
Authors:Tanaka, Y, Sasaki, T, Tanabe, E, Yao, M, Tanaka, I, Kumagai, I, Tsumoto, K.
Deposit date:2006-03-10
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
1WU7
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BU of 1wu7 by Molmil
Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
Descriptor: Histidyl-tRNA synthetase
Authors:Tanaka, Y, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I.
Deposit date:2004-12-01
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
Descriptor: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
Authors:Tanaka, Y, Yasutake, Y, Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
1J2V
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BU of 1j2v by Molmil
Crystal Structure of CutA1 from Pyrococcus Horikoshii
Descriptor: 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y, Sakai, N, Yasutake, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
3I4I
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BU of 3i4i by Molmil
Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
Descriptor: 1,3-1,4-beta-glucanase, CALCIUM ION
Authors:Nakatani, Y, Nalder, T.D, Tannock, G.W, Cutfield, J.F, Jack, R.W, Carne, A.
Deposit date:2009-07-01
Release date:2010-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
To be Published

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