Author results

4U9L
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STRUCTURE OF A MEMBRANE PROTEIN
Descriptor:Magnesium transporter MgtE, MAGNESIUM ION, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Takeda, H., Hattori, M., Nishizawa, T., Yamashita, K., Shah, S.T.A., Caffrey, M., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-08-06
Release date:2014-12-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
4U9N
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STRUCTURE OF A MEMBRANE PROTEIN
Descriptor:Magnesium transporter MgtE, MANGANESE (II) ION, OLEIC ACID, ...
Authors:Takeda, H., Hattori, M., Nishizawa, T., Yamashita, K., Shah, S.T.A., Caffrey, M., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-08-06
Release date:2014-12-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
4WIB
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CRYSTAL STRUCTURE OF MAGNESIUM TRANSPORTER MGTE
Descriptor:Magnesium transporter MgtE, CALCIUM ION
Authors:Takeda, H., Hattori, M., Nishizawa, T., Yamashita, K., Shah, S.T.A., Caffrey, M., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-09-25
Release date:2014-12-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
5Y5H
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SF-ROX STRUCTURE OF CYTOCHROME P450NOR (NO-BOUND STATE) DETERMINED AT SACLA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Yamagiwa, R., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Yamashita, A., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5I
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: 20 MS AFTER PHOTO-IRRADIATION OF CAGED NO IN THE PRESENCE OF NADH (NO-BOUND STATE), LIGHT DATA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5J
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: DARK-2 DATA IN THE PRESENCE OF NADH (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, GLYCEROL
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5K
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR : 20 MS AFTER PHOTO-IRRADIATION OF CAGED NO IN THE ABSENCE OF NADH (NO-BOUND STATE), LIGHT DATA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5L
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: DARK-2 DATA IN THE ABSENCE OF NADH (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5M
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SFX STRUCTURE OF CYTOCHROME P450NOR: A COMPLETE DARK DATA WITHOUT PUMP LASER (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2018-08-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
4U4T
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN NITRATE-BOUND INWARD-OPEN STATE
Descriptor:Nitrate/nitrite transporter NarK, NITRATE ION, ZINC ION, ...
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
4U4V
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN APO INWARD-OPEN STATE
Descriptor:Nitrate/nitrite transporter NarK, OLEIC ACID, NICKEL (II) ION
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
4U4W
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN NITRATE-BOUND OCCLUDED STATE
Descriptor:Nitrate/nitrite transporter NarK, NITRATE ION, OLEIC ACID, ...
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
5Y5F
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STRUCTURE OF CYTOCHROME P450NOR IN NO-BOUND STATE: DAMAGED BY LOW-DOSE (0.72 MGY) X-RAY
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5G
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STRUCTURE OF CYTOCHROME P450NOR IN NO-BOUND STATE: DAMAGED BY LOW-DOSE (0.72 MGY) X-RAY
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5ZLE
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HUMAN DUODENAL CYTOCHROME B (DCYTB) IN SUBSTRATE FREE FORM
Descriptor:Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ganasen, M., Togashi, H., Mauk, G.A., Shiro, Y., Sawai, H., Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5ZLG
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HUMAN DUODENAL CYTOCHROME B (DCYTB) IN ZINC ION AND ASCORBATE BOUND FORM
Descriptor:Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION, ...
Authors:Ganasen, M., Togashi, H., Mauk, G.A., Shiro, Y., Sawai, H., Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5B83
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CRYSTAL STRUCTURE OF OPTINEURIN UBAN IN COMPLEX WITH LINEAR UBIQUITIN
Descriptor:tetra ubiquitin, Optineurin
Authors:Ishii, R., Nureki, O.
Deposit date:2016-06-12
Release date:2016-09-07
Method:X-RAY DIFFRACTION (2.694 Å)
Cite:Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis
Nat Commun, 7, 2016
5X9G
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CRYSTAL STRUCTURE OF THE CYTOSOLIC DOMAIN OF THE MG2+ CHANNEL MGTE IN COMPLEX WITH ATP
Descriptor:Magnesium transporter MgtE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Tomita, A., Hattori, M., Nureki, O.
Deposit date:2017-03-07
Release date:2017-08-16
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:ATP-dependent modulation of MgtE in Mg(2+) homeostasis
Nat Commun, 8, 2017
5X9H
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CRYSTAL STRUCTURE OF THE MG2+ CHANNEL MGTE IN COMPLEX WITH ATP
Descriptor:Magnesium transporter MgtE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Tomita, A., Hattori, M., Nureki, O.
Deposit date:2017-03-07
Release date:2017-08-16
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (3.598 Å)
Cite:ATP-dependent modulation of MgtE in Mg(2+) homeostasis
Nat Commun, 8, 2017
3WSQ
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STRUCTURE OF HER2 WITH AN FAB
Descriptor:Receptor tyrosine-protein kinase erbB-2, Antibody Light Chain, Antibody Heavy Chain
Authors:Fu, W.Y., Wang, Y.X., Zhou, L.J.
Deposit date:2014-03-20
Release date:2015-03-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights into HER2 signaling from step-by-step optimization of anti-HER2 antibodies.
MAbs, 6, 2014
1ULI
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BIPHENYL DIOXYGENASE (BPHA1A2) DERIVED FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1ULJ
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BIPHENYL DIOXYGENASE (BPHA1A2) IN COMPLEX WITH THE SUBSTRATE
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004