Author results

1STC
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CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT IN COMPLEX WITH STAUROSPORINE
Descriptor:CAMP-DEPENDENT PROTEIN KINASE, PROTEIN KINASE INHIBITOR, STAUROSPORINE
Authors:Prade, L., Engh, R.A., Girod, A., Kinzel, V., Huber, R., Bossemeyer, D.
Deposit date:1997-10-10
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Staurosporine-induced conformational changes of cAMP-dependent protein kinase catalytic subunit explain inhibitory potential.
Structure, 5, 1997
3GTU
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LIGAND-FREE HETERODIMERIC HUMAN GLUTATHIONE S-TRANSFERASE M2-3 (EC 2.5.1.18), MONOCLINIC CRYSTAL FORM
Descriptor:GLUTATHIONE S-TRANSFERASE
Authors:Patskovsky, Y.V., Patskovska, L.N., Listowsky, I.
Deposit date:1998-07-29
Release date:1999-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An asparagine-phenylalanine substitution accounts for catalytic differences between hGSTM3-3 and other human class mu glutathione S-transferases.
Biochemistry, 38, 1999
1C8N
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TOBACCO NECROSIS VIRUS
Descriptor:COAT PROTEIN, CALCIUM ION
Authors:Oda, Y., Fukuyama, K.
Deposit date:2000-05-20
Release date:2000-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of tobacco necrosis virus at 2.25 A resolution.
J.Mol.Biol., 300, 2000
1IQZ
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1I7H
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CRYSTAL STURCUTURE OF FDX
Descriptor:FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER
Authors:Kakuta, Y., Horio, T., Takahashi, Y., Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
1KW3
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYAL DIOXYGENASE (BPHC) AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW6
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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CRYSTAL STRUCTURE OF BPHC-2,3-DIHYDROXYBIPHENYL-NO COMPLEX
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, NITRIC OXIDE, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 2.0A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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CRYSTAL STRUCTURE OF THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENY DIOXYGENASE (BPHC)
Descriptor:2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWC
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THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL
Descriptor:2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1UJ8
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STRUCTURES OF ORF3 IN TWO CRYSTAL FORMS, A MEMBER OF ISC MACHINERY OF E. COLI INVOLVED IN THE ASSEMBLY OF IRON-SULFUR CLUSTERS
Descriptor:Hypothetical protein yfhJ
Authors:Shimomura, Y., Takahashi, Y., Fukuyama, K.
Deposit date:2003-07-29
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.
Proteins, 60, 2005
1WTF
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CRYSTAL STRUCTURE OF BACILLUS THERMOPROTEOLYTICUS FERREDOXIN VARIANTS CONTAINING UNEXPECTED [3FE-4S] CLUSTER THAT IS LINKED TO COENZYME A AT 1.6 A RESOLUTION
Descriptor:Ferredoxin, SULFATE ION, COENZYME A, ...
Authors:Shirakawa, T., Takahashi, Y., Wada, K., Hirota, J., Takao, T., Ohmori, D., Fukuyama, K.
Deposit date:2004-11-22
Release date:2005-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin: crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S] cluster associated with a canonical [4Fe-4S] ligand motif
Biochemistry, 44, 2005
2D2A
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFA INVOLVED IN BIOSYNTHESIS OF IRON-SULFUR CLUSTERS
Descriptor:SufA protein
Authors:Wada, K., Hasegawa, Y., Gong, Z., Minami, Y., Fukuyama, K., Takahashi, Y.
Deposit date:2005-09-05
Release date:2005-12-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: Implications for a functional dimer
Febs Lett., 579, 2005
2D3W
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFC, AN ATPASE COMPENENT OF THE SUF IRON-SULFUR CLUSTER ASSEMBLY MACHINERY
Descriptor:Probable ATP-dependent transporter sufC
Authors:Kitaoka, S., Wada, K., Hasegawa, Y., Minami, Y., Takahashi, Y., Fukuyama, K.
Deposit date:2005-10-03
Release date:2006-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
Febs Lett., 580, 2006
2D1E
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CRYSTAL STRUCTURE OF PCYA-BILIVERDIN COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.
Deposit date:2005-08-17
Release date:2006-01-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DKE
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CRYSTAL STRUCTURE OF SUBSTRATE-FREE FORM OF PCYA
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, CHLORIDE ION
Authors:Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.
Deposit date:2006-04-10
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006
2Z9S
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CRYSTAL STRUCTURE ANALYSIS OF RAT HBP23/PEROXIREDOXIN I, CYS52SER MUTANT
Descriptor:Peroxiredoxin-1
Authors:Matsumura, T., Okamoto, K., Nishino, T., Abe, Y.
Deposit date:2007-09-25
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Dimer-Oligomer Interconversion of Wild-type and Mutant Rat 2-Cys Peroxiredoxin: DISULFIDE FORMATION AT DIMER-DIMER INTERFACES IS NOT ESSENTIAL FOR DECAMERIZATION
J.Biol.Chem., 283, 2008
2Z7E
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CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS ISCU WITH BOUND [2FE-2S] CLUSTER
Descriptor:NifU-like protein, SULFATE ION, FE2/S2 (INORGANIC) CLUSTER
Authors:Shimomura, Y., Wada, K., Takahashi, Y., Fukuyama, K.
Deposit date:2007-08-20
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The asymmetric trimeric architecture of [2Fe-2S] IscU: implications for its scaffolding during iron-sulfur cluster biosynthesis
J.Mol.Biol., 383, 2008
2ZHP
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CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN FROM STREPTOALLOTEICHUS HINDUSTANUS COMPLEXED WITH BLEOMYCIN DERIVATIVE
Descriptor:Bleomycin resistance protein, [(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)-2-[(1R,2S)-2-[[6-amino-2-[(1S)-3-amino-1-[(2,3-diamino-3-oxopropyl)amino]-3-oxopropyl]-5-methylpyrimidine-4-carbonyl]amino]-3-[[(2S,3R,4R)-5-[[(2R,3S)-1-[2-[4-[4-[3-[4-(3-aminopropylamino)butylamino]propylcarbamoyl]-1,3-thiazol-2-yl]-1,3-thiazol-2-yl]ethylamino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-hydroxy-4-methyl-5-oxopentan-2-yl]amino]-1-(3H-imidazol-4-yl)-3-oxopropoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl] carbamate, COPPER (II) ION, ...
Authors:Okumura, H., Miyazaki, I., Simizu, S., Osada, H.
Deposit date:2008-02-06
Release date:2009-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Affinity Relationship Study of Bleomycins and Shble protein Using a Chemical Array
To be Published
2ZU0
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CRYSTAL STRUCTURE OF SUFC-SUFD COMPLEX INVOLVED IN THE IRON-SULFUR CLUSTER BIOSYNTHESIS
Descriptor:Protein sufD, Probable ATP-dependent transporter sufC, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Wada, K.
Deposit date:2008-10-11
Release date:2009-03-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of SufC(2)-SufD(2) complex
J.Mol.Biol., 387, 2009
3I8U
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CRYSTAL STRUCTURE OF PCYA-181,182-DIHYDROBILIVERDIN COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-2-ylidene]methyl]-5-[(Z)-(4-ethyl-3-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Hagiwara, Y., Sugishima, M., Fukuyama, K.
Deposit date:2009-07-10
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural insights into vinyl reduction regiospecificity of phycocyanobilin:ferredoxin oxidoreductase (PcyA).
To be Published
3I94
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CRYSTAL STRUCTURE OF PCYA-BILIVERDIN XIII ALPHA COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-2-ylidene]methyl]-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, SULFATE ION
Authors:Hagiwara, Y., Sugishima, M., Fukuyama, K.
Deposit date:2009-07-10
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structural insights into vinyl reduction regiospecificity of phycocyanobilin:ferredoxin oxidoreductase (PcyA).
to be published
3I95
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CRYSTAL STRUCTURE OF E76Q MUTANT PCYA-BILIVERDIN COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Sugishima, M., Fukuyama, K.
Deposit date:2009-07-10
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural insights into vinyl reduction regiospecificity of phycocyanobilin:ferredoxin oxidoreductase (PcyA).
To be Published