Author results

3WNL
  • Download 3wnl
  • View 3wnl
Molmil generated image of 3wnl
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOHEXAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNM
  • Download 3wnm
  • View 3wnm
Molmil generated image of 3wnm
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOHEPTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNN
  • Download 3wnn
  • View 3wnn
Molmil generated image of 3wnn
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOOCTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNK
  • Download 3wnk
  • View 3wnk
Molmil generated image of 3wnk
CRYSTAL STRUCTURE OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CADMIUM ION, CALCIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNO
  • Download 3wno
  • View 3wno
Molmil generated image of 3wno
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH CYCLOISOMALTOOCTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3VMN
  • Download 3vmn
  • View 3vmn
Molmil generated image of 3vmn
CRYSTAL STRUCTURE OF DEXTRANASE FROM STREPTOCOCCUS MUTANS
Descriptor:Dextranase, PHOSPHATE ION
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
3VMO
  • Download 3vmo
  • View 3vmo
Molmil generated image of 3vmo
CRYSTAL STRUCTURE OF DEXTRANASE FROM STREPTOCOCCUS MUTANS IN COMPLEX WITH ISOMALTOTRIOSE
Descriptor:Dextranase, BETA-D-GLUCOSE, ALPHA-D-GLUCOSE, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
3VMP
  • Download 3vmp
  • View 3vmp
Molmil generated image of 3vmp
CRYSTAL STRUCTURE OF DEXTRANASE FROM STREPTOCOCCUS MUTANS IN COMPLEX WITH 4,5-EPOXYPENTYL ALPHA-D-GLUCOPYRANOSIDE
Descriptor:Dextranase, 5-hydroxypentyl alpha-D-glucopyranoside, PHOSPHATE ION
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
3AI4
  • Download 3ai4
  • View 3ai4
Molmil generated image of 3ai4
CRYSTAL STRUCTURE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN - MOUSE POLYMERASE IOTA UBIQUITIN BINDING MOTIF FUSION PROTEIN
Descriptor:yeast enhanced green fluorescent protein,DNA polymerase iota, SULFATE ION
Authors:Suzuki, N., Wakatsuki, S., Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3AI5
  • Download 3ai5
  • View 3ai5
Molmil generated image of 3ai5
CRYSTAL STRUCTURE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN-UBIQUITIN FUSION PROTEIN
Descriptor:yeast enhanced green fluorescent protein,Ubiquitin, 1,2-ETHANEDIOL
Authors:Suzuki, N., Wakatsuki, S., Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
5AXG
  • Download 5axg
  • View 5axg
Molmil generated image of 5axg
CRYSTAL STRUCTURE OF THERMOPHILIC DEXTRANASE FROM THERMOANAEROBACTER PSEUDETHANOLICUS
Descriptor:Dextranase, PHOSPHATE ION, 1,2-ETHANEDIOL, ...
Authors:Suzuki, N., Kishine, N., Fujimoto, Z., Sakurai, M., Momma, M., Ko, J.A., Nam, S.H., Kimura, A., Kim, Y.M.
Deposit date:2015-07-29
Release date:2015-11-11
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
J.Biochem., 159, 2016
5AXH
  • Download 5axh
  • View 5axh
Molmil generated image of 5axh
CRYSTAL STRUCTURE OF THERMOPHILIC DEXTRANASE FROM THERMOANAEROBACTER PSEUDETHANOLICUS, D312G MUTANT IN COMPLEX WITH ISOMALTOHEXAOSE
Descriptor:Dextranase, ALPHA-D-GLUCOSE, PHOSPHATE ION, ...
Authors:Suzuki, N., Kishine, N., Fujimoto, Z., Sakurai, M., Momma, M., Ko, J.A., Nam, S.H., Kimura, A., Kim, Y.M.
Deposit date:2015-07-29
Release date:2015-11-11
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
J.Biochem., 159, 2016
1X2T
  • Download 1x2t
  • View 1x2t
Molmil generated image of 1x2t
CRYSTAL STRUCTURE OF HABU IX-BP AT PH 6.5
Descriptor:Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, CALCIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Morita, T., Fukamizu, A., Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
1X2W
  • Download 1x2w
  • View 1x2w
Molmil generated image of 1x2w
CRYSTAL STRUCTURE OF APO-HABU IX-BP AT PH 4.6
Descriptor:Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, CHLORIDE ION, ...
Authors:Suzuki, N., Fujimoto, Z., Morita, T., Fukamizu, A., Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
2DDA
  • Download 2dda
  • View 2dda
Molmil generated image of 2dda
CRYSTAL STRUCTURE OF PSEUDECHETOXIN FROM PSEUDECHIS AUSTRALIS
Descriptor:Pseudechetoxin, SODIUM ION, FORMIC ACID, ...
Authors:Suzuki, N., Yamazaki, Y., Fujimoto, Z., Morita, T., Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2DDB
  • Download 2ddb
  • View 2ddb
Molmil generated image of 2ddb
CRYSTAL STRUCTURE OF PSEUDECIN FROM PSEUDECHIS PORPHYRIACUS
Descriptor:Pseudecin, SODIUM ION, FORMIC ACID, ...
Authors:Suzuki, N., Yamazaki, Y., Fujimoto, Z., Morita, T., Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2EPF
  • Download 2epf
  • View 2epf
Molmil generated image of 2epf
CRYSTAL STRUCTURE OF ZINC-BOUND PSEUDECIN FROM PSEUDECHIS PORPHYRIACUS
Descriptor:Pseudecin, ZINC ION, SODIUM ION
Authors:Suzuki, N., Yamazaki, Y., Fujimoto, Z., Morita, T., Mizuno, H.
Deposit date:2007-03-29
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
3VHS
  • Download 3vhs
  • View 3vhs
Molmil generated image of 3vhs
CRYSTAL STRUCTURE OF UBZ OF HUMAN WRNIP1
Descriptor:ATPase WRNIP1, ZINC ION, SODIUM ION
Authors:Suzuki, N., Wakatsuki, S., Kawasaki, M.
Deposit date:2011-09-06
Release date:2012-10-10
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3VHT
  • Download 3vht
  • View 3vht
Molmil generated image of 3vht
CRYSTAL STRUCTURE OF GFP-WRNIP1 UBZ DOMAIN FUSION PROTEIN IN COMPLEX WITH UBIQUITIN
Descriptor:Green fluorescent protein, Green fluorescent protein,ATPase WRNIP1, Ubiquitin, ...
Authors:Suzuki, N., Wakatsuki, S., Kawasaki, M.
Deposit date:2011-09-06
Release date:2012-10-10
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3WUP
  • Download 3wup
  • View 3wup
Molmil generated image of 3wup
CRYSTAL STRUCTURE OF THE UBIQUITIN-BINDING ZINC FINGER (UBZ) DOMAIN OF THE HUMAN DNA POLYMERASE ETA
Descriptor:DNA polymerase eta, ZINC ION, CHLORIDE ION, ...
Authors:Suzuki, N., Wakatsuki, S., Kawasaki, S.
Deposit date:2014-05-01
Release date:2015-06-17
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3WNP
  • Download 3wnp
  • View 3wnp
Molmil generated image of 3wnp
D308A, F268V, D469Y, A513V, AND Y515S QUINTUPLE MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOUNDECAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, R., Suzuki, N., Fujimoto, Z., Momma, M., Kimura, K., Kitamura, S., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular engineering of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040: structural determinants for the reaction product size and reactivity.
Biochem.J., 2015
5X7G
  • Download 5x7g
  • View 5x7g
Molmil generated image of 5x7g
CRYSTAL STRUCTURE OF PAENIBACILLUS SP. 598K CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Fujimoto, Z., Kishine, N., Suzuki, N., Suzuki, R., Momma, M., Funane, K.
Deposit date:2017-02-26
Release date:2017-04-26
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017
5X7H
  • Download 5x7h
  • View 5x7h
Molmil generated image of 5x7h
CRYSTAL STRUCTURE OF PAENIBACILLUS SP. 598K CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH CYCLOISOMALTOHEPTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Fujimoto, Z., Kishine, N., Suzuki, N., Suzuki, R., Momma, M., Funane, K.
Deposit date:2017-02-26
Release date:2017-04-26
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017
5X7O
  • Download 5x7o
  • View 5x7o
Molmil generated image of 5x7o
CRYSTAL STRUCTURE OF PAENIBACILLUS SP. 598K ALPHA-1,6-GLUCOSYLTRANSFERASE
Descriptor:Glycoside hydrolase family 31 alpha-glucosidase, CALCIUM ION, NICKEL (II) ION, ...
Authors:Fujimoto, Z., Suzuki, N., Kishine, N., Momma, M., Ichinose, H., Kimura, A., Funane, K.
Deposit date:2017-02-27
Release date:2017-07-26
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Carbohydrate-binding architecture of the multi-modular alpha-1,6-glucosyltransferase from Paenibacillus sp. 598K, which produces alpha-1,6-glucosyl-alpha-glucosaccharides from starch
Biochem. J., 474, 2017
5X7P
  • Download 5x7p
  • View 5x7p
Molmil generated image of 5x7p
CRYSTAL STRUCTURE OF PAENIBACILLUS SP. 598K ALPHA-1,6-GLUCOSYLTRANSFERASE COMPLEXED WITH ACARBOSE
Descriptor:Glycoside hydrolase family 31 alpha-glucosidase, CALCIUM ION, ALPHA-ACARBOSE, ...
Authors:Fujimoto, Z., Kishine, N., Suzuki, N., Momma, M., Ichinose, H., Kimura, A., Funane, K.
Deposit date:2017-02-27
Release date:2017-07-26
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Carbohydrate-binding architecture of the multi-modular alpha-1,6-glucosyltransferase from Paenibacillus sp. 598K, which produces alpha-1,6-glucosyl-alpha-glucosaccharides from starch
Biochem. J., 474, 2017
<123>