Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1J4N
DownloadVisualize
BU of 1j4n by Molmil
Crystal Structure of the AQP1 water channel
Descriptor: AQUAPORIN 1, nonyl beta-D-glucopyranoside
Authors:Sui, H, Han, B.-G, Lee, J.K, Walian, P, Jap, B.K.
Deposit date:2001-10-19
Release date:2002-03-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of water-specific transport through the AQP1 water channel.
Nature, 414, 2001
4P76
DownloadVisualize
BU of 4p76 by Molmil
Cellular response to a crystal-forming protein
Descriptor: Photoconvertible fluorescent protein, SODIUM ION
Authors:Tsutsui, H, Jinno, Y, Shoda, K, Tomita, A, Matsuda, M, Yamashita, E, Katayama, H, Nakagawa, A, Miyawaki, A.
Deposit date:2014-03-26
Release date:2015-04-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A diffraction-quality protein crystal processed as an autophagic cargo
Mol.Cell, 58, 2015
1XSS
DownloadVisualize
BU of 1xss by Molmil
Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter.
Descriptor: MAGNESIUM ION, SODIUM ION, fluorescent protein
Authors:Tsutsui, H, Karasawa, S, Shimizu, H, Nukina, N, Miyawaki, A.
Deposit date:2004-10-20
Release date:2005-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Semi-rational engineering of a coral fluorescent protein into an efficient highlighter
Embo Rep., 6, 2005
2DDD
DownloadVisualize
BU of 2ddd by Molmil
Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Descriptor: MAGNESIUM ION, SODIUM ION, photoconvertible fluorescent protein
Authors:Shimizu, H, Tsutsui, H, Nukina, N, Miyawaki, A.
Deposit date:2006-01-27
Release date:2006-03-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins
Chem.Biol., 16, 2009
2DDC
DownloadVisualize
BU of 2ddc by Molmil
Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Descriptor: MAGNESIUM ION, SODIUM ION, photoconvertible fluorescent protein
Authors:Shimizu, H, Tsutsui, H, Nukina, N, Miyawaki, A.
Deposit date:2006-01-27
Release date:2006-03-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins.
Chem.Biol., 16, 2009
1GGZ
DownloadVisualize
BU of 1ggz by Molmil
CRYSTAL STRUCTURE OF THE CALMODULIN-LIKE PROTEIN (HCLP) FROM HUMAN EPITHELIAL CELLS
Descriptor: CALCIUM ION, CALMODULIN-RELATED PROTEIN NB-1
Authors:Han, B.-G, Han, M, Sui, H, Yaswen, P, Walian, P.J, Jap, B.K.
Deposit date:2000-10-13
Release date:2002-06-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of human calmodulin-like protein: insights into its functional role.
FEBS Lett., 521, 2002
3Q2Z
DownloadVisualize
BU of 3q2z by Molmil
Human Squalene synthase in complex with N-[(3R,5S)-7-Chloro-5-(2,3-dimethoxyphenyl)-1-neopentyl-2-oxo-1,2,3,5-tetrahydro-4,1-benzoxazepine-3-acetyl]-L-aspartic acid
Descriptor: N-{[(3R,5S)-7-chloro-5-(2,3-dimethoxyphenyl)-1-(2,2-dimethylpropyl)-2-oxo-1,2,3,5-tetrahydro-4,1-benzoxazepin-3-yl]acetyl}-L-aspartic acid, PHOSPHATE ION, Squalene synthase
Authors:Suzuki, M, Shimizu, H, Katakura, S, Yamazaki, K, Higashihashi, N, Ichikawa, M, Yokomizo, A, Itoh, M, Sugita, K, Usui, H.
Deposit date:2010-12-21
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of a new 2-aminobenzhydrol template for highly potent squalene synthase inhibitors
Bioorg.Med.Chem., 19, 2011
3Q30
DownloadVisualize
BU of 3q30 by Molmil
Human Squalene synthase in complex with (2R,3R)-2-Carboxymethoxy-3-[5-(2-naphthalenyl)pentyl]aminocarbonyl-3-[5-(2-naphthalenyl)pentyloxy]propionic acid
Descriptor: (2R,3R)-2-(carboxymethoxy)-4-{[5-(naphthalen-2-yl)pentyl]amino}-3-{[5-(naphthalen-2-yl)pentyl]oxy}-4-oxobutanoic acid, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Suzuki, M, Shimizu, H, Katakura, S, Yamazaki, K, Higashihashi, N, Ichikawa, M, Yokomizo, A, Itoh, M, Sugita, K, Usui, H.
Deposit date:2010-12-21
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of a new 2-aminobenzhydrol template for highly potent squalene synthase inhibitors
Bioorg.Med.Chem., 19, 2011
3V66
DownloadVisualize
BU of 3v66 by Molmil
HUMAN SQUALENE SYNTHASE IN COMPLEX WITH 2-(1-{2-[(4R,6S)-8-chloro-6-(2,3-dimethoxyphenyl)-4H,6H-pyrrolo[1,2-a][4,1]benzoxazepin-4-yl]acetyl}-4-piperidinyl)acetic acid
Descriptor: (1-{[(4R,6S)-8-chloro-6-(2,3-dimethoxyphenyl)-4H,6H-pyrrolo[1,2-a][4,1]benzoxazepin-4-yl]acetyl}piperidin-4-yl)acetic acid, PHOSPHATE ION, Squalene synthase
Authors:Suzuki, M, Ohtsuka, M, Ohki, H, Haginoya, N, Itoh, M, Sugita, K, Usui, H, Ichikawa, M, Higashihashi, N.
Deposit date:2011-12-18
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of novel tricyclic compounds as squalene synthase inhibitors
Bioorg.Med.Chem., 20, 2012
1IU4
DownloadVisualize
BU of 1iu4 by Molmil
Crystal Structure Analysis of the Microbial Transglutaminase
Descriptor: microbial transglutaminase
Authors:Kashiwagi, T, Yokoyama, K, Ishikawa, K, Ono, K, Ejima, D, Matsui, H, Suzuki, E.
Deposit date:2002-02-27
Release date:2002-08-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of microbial transglutaminase from Streptoverticillium mobaraense
J.Biol.Chem., 277, 2002
3AW0
DownloadVisualize
BU of 3aw0 by Molmil
Structure of SARS 3CL protease with peptidic aldehyde inhibitor
Descriptor: 3C-Like Proteinase, peptide ACE-SER-ALA-VAL-LEU-HIS-H
Authors:Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
Deposit date:2011-03-09
Release date:2011-12-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors.
J.Med.Chem., 54, 2011
3AW1
DownloadVisualize
BU of 3aw1 by Molmil
Structure of SARS 3CL protease auto-proteolysis resistant mutant in the absent of inhibitor
Descriptor: 3C-Like Proteinase
Authors:Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
Deposit date:2011-03-09
Release date:2011-12-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors.
J.Med.Chem., 54, 2011
3ATW
DownloadVisualize
BU of 3atw by Molmil
Structure-Based Design, Synthesis, Evaluation of Peptide-mimetic SARS 3CL Protease Inhibitors
Descriptor: 3C-Like Proteinase, peptide ACE-THR-VAL-ALC-HIS-H
Authors:Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
Deposit date:2011-01-20
Release date:2011-12-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors.
J.Med.Chem., 54, 2011
3AVZ
DownloadVisualize
BU of 3avz by Molmil
Structure of SARS 3CL protease with peptidic aldehyde inhibitor containing cyclohexyl side chain
Descriptor: 3C-Like Proteinase, peptide ACE-SER-ALA-VAL-ALC-HIS-H
Authors:Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
Deposit date:2011-03-09
Release date:2011-12-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors.
J.Med.Chem., 54, 2011
3ASX
DownloadVisualize
BU of 3asx by Molmil
Human Squalene synthase in complex with 1-{4-[{4-chloro-2-[(2-chlorophenyl)(hydroxy)methyl]phenyl}(2,2-dimethylpropyl)amino]-4-oxobutanoyl}piperidine-3-carboxylic acid
Descriptor: (3R)-1-{4-[{4-chloro-2-[(S)-(2-chlorophenyl)(hydroxy)methyl]phenyl}(2,2-dimethylpropyl)amino]-4-oxobutanoyl}piperidine-3-carboxylic acid, PHOSPHATE ION, Squalene synthase
Authors:Shimizu, H, Suzuki, M, Katakura, S, Yamazaki, K, Higashihashi, N, Ichikawa, M, Yokomizo, A, Itoh, M, Sugita, K, Usui, H.
Deposit date:2010-12-22
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of a new 2-aminobenzhydrol template for highly potent squalene synthase inhibitors
Bioorg.Med.Chem., 19, 2011
6DCG
DownloadVisualize
BU of 6dcg by Molmil
Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology
Descriptor: (3S)-3-(methylsulfanyl)-1-(2-{4-[4-(1-methyl-1H-1,2,4-triazol-3-yl)phenyl]-3,6-dihydropyridin-1(2H)-yl}-2-oxoethyl)-N-(3-{6-[(propan-2-yl)oxy]pyridin-3-yl}-1H-indazol-5-yl)pyrrolidine-3-carboxamide, Mitogen-activated protein kinase 1, SULFATE ION
Authors:Boga, S.B, Deng, Y, Zhu, L, Nan, Y, Cooper, A, Shipps Jr, G.W, Doll, R, Shih, N, Zhu, H, Sun, R, Wang, T, Paliwal, S, Tsui, H, Gao, X, Yao, X, Desai, J, Wang, J, Alhassan, A.B, Kelly, J, Patel, M, Muppalla, K, Gudipati, S, Zhang, L, Buevich, A, Hesk, D, Carr, D, Dayananth, P, Mei, H, Cox, K, Sherborne, B, Hruza, A.W, Xiao, L, Jin, W, Long, B, Liu, G, Taylor, S.A, Kirschmeier, P, Windsor, W.T, Bishop, R, Samatar, A.A.
Deposit date:2018-05-06
Release date:2018-08-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:MK-8353: Discovery of an Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology.
ACS Med Chem Lett, 9, 2018
2EK9
DownloadVisualize
BU of 2ek9 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1 with Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ISOPROPYL ALCOHOL, ...
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
2EK8
DownloadVisualize
BU of 2ek8 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1
Descriptor: Aminopeptidase, ISOPROPYL ALCOHOL, ZINC ION
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
4PF3
DownloadVisualize
BU of 4pf3 by Molmil
Mineralocorticoid receptor ligand-binding domain with compuond 37a
Descriptor: 1,2-ETHANEDIOL, 6-[1-(2,2-difluoro-3-hydroxypropyl)-5-(4-fluorophenyl)-3-methyl-1H-pyrazol-4-yl]-2H-1,4-benzoxazin-3(4H)-one, Mineralocorticoid receptor
Authors:Sogabe, S, Habuka, N.
Deposit date:2014-04-28
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Discovery of 6-[5-(4-fluorophenyl)-3-methyl-pyrazol-4-yl]-benzoxazin-3-one derivatives as novel selective nonsteroidal mineralocorticoid receptor antagonists
Bioorg.Med.Chem., 22, 2014
5B13
DownloadVisualize
BU of 5b13 by Molmil
Crystal structure of phycoerythrin
Descriptor: PHYCOCYANOBILIN, PHYCOUROBILIN, Phycoerythrin alpha subunit, ...
Authors:Tanaka, Y, Gai, Z, Kishimura, H.
Deposit date:2015-11-18
Release date:2016-10-05
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.094 Å)
Cite:Structural properties of phycoerythrin from dulse palmaria palmata
J FOOD BIOCHEM., 2016
8JL8
DownloadVisualize
BU of 8jl8 by Molmil
Crystal structure of the collagen binding domain of Cnm from Streptococcus mutans
Descriptor: Collagen-binding adhesin, GLYCEROL, SULFATE ION
Authors:Tanaka, S.-i, Hirata, A, Takano, K.
Deposit date:2023-06-02
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure, Stability and Binding Properties of Collagen-Binding Domains from Streptococcus mutans.
Chemistry, 5, 2023
3VHU
DownloadVisualize
BU of 3vhu by Molmil
Mineralocorticoid receptor ligand-binding domain with spironolactone
Descriptor: Mineralocorticoid receptor, SPIRONOLACTONE
Authors:Sogabe, S, Habuka, N.
Deposit date:2011-09-07
Release date:2011-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification of Benzoxazin-3-one Derivatives as Novel, Potent, and Selective Nonsteroidal Mineralocorticoid Receptor Antagonists
J.Med.Chem., 54, 2011
3VHV
DownloadVisualize
BU of 3vhv by Molmil
Mineralocorticoid receptor ligand-binding domain with non-steroidal antagonist
Descriptor: 1,2-ETHANEDIOL, 6-[(1E)-2-phenyl-N-(3-sulfanyl-4H-1,2,4-triazol-4-yl)ethanimidoyl]-2H-1,4-benzoxazin-3(4H)-one, 6-[(7S)-7-phenyl-7H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazin-6-yl]-2H-1,4-benzoxazin-3(4H)-one, ...
Authors:Sogabe, S, Habuka, N.
Deposit date:2011-09-07
Release date:2011-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Identification of Benzoxazin-3-one Derivatives as Novel, Potent, and Selective Nonsteroidal Mineralocorticoid Receptor Antagonists
J.Med.Chem., 54, 2011
3VW5
DownloadVisualize
BU of 3vw5 by Molmil
Crystal structure of sugar epimerase from ruminal bacterium
Descriptor: Cellobiose 2-epimerase
Authors:Fujiwara, T, Saburi, W, Tanaka, I, Yao, M.
Deposit date:2012-08-02
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Ruminococcus albus cellobiose 2-epimerase: structural insights into epimerization of unmodified sugar
Febs Lett., 587, 2013
1G0D
DownloadVisualize
BU of 1g0d by Molmil
CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
Descriptor: PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION
Authors:Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of red sea bream transglutaminase.
J.Biol.Chem., 276, 2001

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon