Author results

3IKK
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CRYSTAL STRUCTURE ANALYSIS OF MSP DOMAIN
Descriptor:Vesicle-associated membrane protein-associated protein B/C
Authors:Shi, J., Lua, S., Song, J.
Deposit date:2009-08-06
Release date:2010-05-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Elimination of the native structure and solubility of the hVAPB MSP domain by the Pro56Ser mutation that causes amyotrophic lateral sclerosis.
Biochemistry, 49, 2010
5LUP
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STRUCTURES OF DHBN DOMAIN OF HUMAN BLM HELICASE
Descriptor:BLM protein, PHOSPHATE ION, POTASSIUM ION
Authors:Shi, J., Chen, W.-F., Zhang, B., Fan, S.-H., Ai, X., Liu, N.-N., Rety, S., Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.032 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUS
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STRUCTURES OF DHBN DOMAIN OF PELECANUS CRISPUS BLM HELICASE
Descriptor:BLM helicase
Authors:Shi, J., Chen, W.-F., Zhang, B., Fan, S.-H., Ai, X., Liu, N.-N., Rety, S., Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUT
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STRUCTURES OF DHBN DOMAIN OF GALLUS GALLUS BLM HELICASE
Descriptor:BLM helicase, PHOSPHATE ION
Authors:Shi, J., Chen, W.-F., Zhang, B., Fan, S.-H., Ai, X., Liu, N.-N., Rety, S., Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5MK5
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STRUCTURES OF DHBN DOMAIN OF HUMAN BLM HELICASE
Descriptor:Bloom syndrome protein, IODIDE ION, POTASSIUM ION
Authors:Shi, J., Chen, W.-F., Zhang, B., Fan, S.-H., Ai, X., Liu, N.-N., Rety, S., Xi, X.-G.
Deposit date:2016-12-02
Release date:2017-03-01
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5GNG
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CRYSTAL STRUCTURE OF BIOG FROM HAEMOPHILUS INFLUENZAE AT 1.26 ANGSTROMS RESOLUTION
Descriptor:Uncharacterized protein HI_1552
Authors:Shi, J., Guo, Z.
Deposit date:2016-07-20
Release date:2016-12-07
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
5H3B
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CRYSTAL STRUCTURE OF SEMET-BIOG FROM HAEMOPHILUS INFLUENZAE AT 1.49 ANGSTROMS RESOLUTION
Descriptor:Uncharacterized protein HI_1552, GLYCEROL, ISOPROPYL ALCOHOL
Authors:Shi, J., Guo, Z.
Deposit date:2016-10-21
Release date:2016-12-07
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.492 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
4GJT
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COMPLEX STRUCTURE OF NECTIN-4 BOUND TO MV-H
Descriptor:Hemagglutinin glycoprotein, Poliovirus receptor-related protein 4, N-ACETYL-D-GLUCOSAMINE
Authors:Zhang, X., Lu, G., Qi, J., Li, Y., He, Y., Xu, X., Shi, J., Zhang, C., Yan, J., Gao, G.F.
Deposit date:2012-08-10
Release date:2012-10-10
Last modified:2013-04-10
Method:X-RAY DIFFRACTION (3.1001 Å)
Cite:Structure of measles virus hemagglutinin bound to its epithelial receptor nectin-4
Nat.Struct.Mol.Biol., 20, 2013
2WN9
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CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH 4-0H-DMXBA
Descriptor:SOLUBLE ACETYLCHOLINE RECEPTOR, 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-3(4H)-YLIDENEMETHYL]-3-METHOXYPHENOL, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sulzenbacher, G., Hibbs, R., Shi, J., Talley, T., Conrod, S., Kem, W., Taylor, P., Marchot, P., Bourne, Y.
Deposit date:2009-07-07
Release date:2009-09-01
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural determinants for interaction of partial agonists with acetylcholine binding protein and neuronal alpha7 nicotinic acetylcholine receptor.
Embo J., 28, 2009
2WNC
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CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH TROPISETRON
Descriptor:Soluble acetylcholine receptor, (3-ENDO)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL 1H-INDOLE-3-CARBOXYLATE
Authors:Sulzenbacher, G., Hibbs, R., Shi, J., Talley, T., Conrod, S., Kem, W., Taylor, P., Marchot, P., Bourne, Y.
Deposit date:2009-07-08
Release date:2009-09-01
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural determinants for interaction of partial agonists with acetylcholine binding protein and neuronal alpha7 nicotinic acetylcholine receptor.
EMBO J., 28, 2009
2WNJ
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CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH DMXBA
Descriptor:SOLUBLE ACETYLCHOLINE RECEPTOR, (3E)-3-[(2,4-DIMETHOXYPHENYL)METHYLIDENE]-3,4,5,6-TETRAHYDRO-2,3'-BIPYRIDINE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sulzenbacher, G., Hibbs, R., Shi, J., Talley, T., Conrod, S., Kem, W., Taylor, P., Marchot, P., Bourne, Y.
Deposit date:2009-07-09
Release date:2009-09-01
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Determinants for Interaction of Partial Agonists with Acetylcholine Binding Protein and Neuronal Alpha7 Nicotinic Acetylcholine Receptor.
Embo J., 28, 2009
2WNL
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CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH ANABASEINE
Descriptor:SOLUBLE ACETYLCHOLINE RECEPTOR, 3,4,5,6-tetrahydro-2,3'-bipyridine, 5-amino-1-pyridin-3-ylpentan-1-one, ...
Authors:Sulzenbacher, G., Hibbs, R., Shi, J., Talley, T., Conrod, S., Kem, W., Taylor, P., Marchot, P., Bourne, Y.
Deposit date:2009-07-09
Release date:2009-09-01
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural determinants for interaction of partial agonists with acetylcholine binding protein and neuronal alpha7 nicotinic acetylcholine receptor.
EMBO J., 28, 2009
5CB2
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THE STRUCTURE OF CANDIDA ALBICANS SEY1P IN COMPLEX WITH GMPPNP
Descriptor:Protein SEY1, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Yan, L., Sun, S., Wang, W., Shi, J., Hu, X., Wang, S., Rao, Z., Hu, J., Lou, Z.
Deposit date:2015-06-30
Release date:2015-09-23
Last modified:2015-10-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of the yeast dynamin-like GTPase Sey1p provide insight into homotypic ER fusion
J.Cell Biol., 210, 2015
5HDE
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CRYSTAL STRUCTURE OF PTPN12 CATALYTIC DOMAIN
Descriptor:Tyrosine-protein phosphatase non-receptor type 12, PHOSPHATE ION
Authors:Dong, H., Li, S., Shi, J.
Deposit date:2016-01-05
Release date:2017-01-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure of PTPN12 Catalytic Domain
To Be Published
1J4E
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FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE COVALENTLY BOUND TO THE SUBSTRATE DIHYDROXYACETONE PHOSPHATE
Descriptor:FRUCTOSE-BISPHOSPHATE ALDOLASE A, 1,3-DIHYDROXYACETONEPHOSPHATE
Authors:Choi, K.H., Shi, J., Hopkins, C.E., Tolan, D.R., Allen, K.N.
Deposit date:2001-09-19
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Snapshots of catalysis: the structure of fructose-1,6-(bis)phosphate aldolase covalently bound to the substrate dihydroxyacetone phosphate.
Biochemistry, 40, 2001
1JZW
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ARSENATE REDUCTASE + SODIUM ARSENATE FROM E. COLI
Descriptor:ARSENATE REDUCTASE, SULFATE ION, SULFITE ION, ...
Authors:Martin, P., DeMel, S., Shi, J., Gladysheva, T., Gatti, D.L., Rosen, B.P., Edwards, B.F.
Deposit date:2001-09-17
Release date:2001-11-28
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Insights into the structure, solvation, and mechanism of ArsC arsenate reductase, a novel arsenic detoxification enzyme.
Structure, 9, 2001
1TM9
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NMR STRUCTURE OF GENE TARGET NUMBER GI3844938 FROM MYCOPLASMA GENITALIUM: BERKELEY STRUCTURAL GENOMICS CENTER
Descriptor:Hypothetical protein MG354
Authors:Pelton, J.G., Shi, J., Yokota, H., Kim, R., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-06-10
Release date:2004-08-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structure of Gene Target gi3844938 from Mycoplasma genitalium
To be Published
2QDY
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CRYSTAL STRUCTURE OF FE-TYPE NHASE FROM RHODOCOCCUS ERYTHROPOLIS AJ270
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Song, L., Shi, J., Xue, Z., Wang, M.-X., Qian, S.
Deposit date:2007-06-22
Release date:2008-05-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:High resolution X-ray molecular structure of the nitrile hydratase from Rhodococcus erythropolis AJ270 reveals posttranslational oxidation of two cysteines into sulfinic acids and a novel biocatalytic nitrile hydration mechanism
Biochem.Biophys.Res.Commun., 362, 2007
3NMQ
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HSP90B N-TERMINAL DOMAIN IN COMPLEX WITH EC44, A PYRROLO-PYRIMIDINE METHOXYPYRIDINE INHIBITOR
Descriptor:Heat shock protein HSP 90-beta, 5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2-ol
Authors:Arndt, J.W., Yun, T.J., Harning, E.K., Giza, K., Rabah, D., Li, P., Luchetti, D., Shi, J., Manning, A., Kehry, M.R.
Deposit date:2010-06-22
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:EC144, a Synthetic Inhibitor of Heat Shock Protein 90, Blocks Innate and Adaptive Immune Responses in Models of Inflammation and Autoimmunity.
J.Immunol., 186, 2011
5H37
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CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 8.0
Descriptor:structural protein E, strutural protein M, C10 IgG heavy chain variable region, ...
Authors:Zhang, S., Kostyuchenko, V., Ng, T.-S., Lim, X.-N., Ooi, J.S.G., Lambert, S., Tan, T.Y., Widman, D., Shi, J., Baric, R.S., Lok, S.-M.
Deposit date:2016-10-20
Release date:2016-11-30
Last modified:2017-01-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Neutralization mechanism of a highly potent antibody against Zika virus
Nat Commun, 7, 2016
5K79
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STRUCTURE AND ANTI-HIV ACTIVITY OF CYT-CVNH, A NEW CYANOVIRIN-N HOMOLOG
Descriptor:Cyanovirin-N domain protein, DI(HYDROXYETHYL)ETHER, 1,2-ETHANEDIOL
Authors:Matei, E., Basu, R., Furey, W., Shi, J., Calnan, C., Aiken, C., Gronenborn, A.M.
Deposit date:2016-05-25
Release date:2016-07-20
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and Glycan Binding of a New Cyanovirin-N Homolog.
J.Biol.Chem., 291, 2016
5TWO
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PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A NOVEL SELECTIVELY PPAR GAMMA-MODULATING LIGAND VSP-51
Descriptor:Peroxisome proliferator-activated receptor gamma, PRO-SER-LEU-LEU-LYS-LYS-LEU-LEU-LEU-ALA-PRO, N-benzyl-1-[(4-chloro-3-fluorophenyl)methyl]-1H-indole-5-carboxamide
Authors:Yi, W., Shi, J., Zhao, G., Zhou, X.E., Suino-Powell, K., Melcher, K., Xu, H.E.
Deposit date:2016-11-14
Release date:2017-02-08
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (1.927 Å)
Cite:Identification of a novel selective PPAR gamma ligand with a unique binding mode and improved therapeutic profile in vitro.
Sci Rep, 7, 2017
5WSO
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CRYSTAL STRUCTURE OF BVDV NS3 HELICASE
Descriptor:NS3 helicase
Authors:Li, P., Shi, J., Wang, S., Li, S., Mao, X.
Deposit date:2016-12-08
Release date:2017-12-13
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Crystal structure of BVDV NS3 helicase
To Be Published
5X8P
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STRUCTURE OF THE 70S CHLOROPLAST RIBOSOME FROM SPINACH
Descriptor:50S ribosomal protein L32, chloroplastic, 50S ribosomal protein L33, ...
Authors:Ahmed, T., Shi, J., Bhushan, S.
Deposit date:2017-03-03
Release date:2017-06-14
Last modified:2018-06-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
Nucleic Acids Res., 45, 2017
5X8R
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STRUCTURE OF THE 30S SMALL SUBUNIT OF CHLOROPLAST RIBOSOME FROM SPINACH
Descriptor:30S ribosomal protein S2, chloroplastic, 30S ribosomal protein S3, ...
Authors:Ahmed, T., Shi, J., Bhushan, S.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2018-06-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
Nucleic Acids Res., 45, 2017