Author results

3IY9
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LEISHMANIA TARENTOLAE MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT MODEL
Descriptor:Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit, 39S ribosomal protein L2, mitochondrial, ...
Authors:Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
Deposit date:2009-04-20
Release date:2009-07-07
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
1X18
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CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT
Descriptor:5'-R(P*CP*GP*AP*UP*GP*GP*CP*GP*AP*AP*G)-3', RNA (31-MER), 5'-R(P*UP*UP*CP*CP*CP*GP*GP*GP*CP*CP*UP*GP*GP*GP*GP*CP*CP*CP*GP*C)-3', ...
Authors:Sharma, M.R., Barat, C., Agrawal, R.K.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2013-12-18
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1X1L
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INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE 16S RRNA WITHIN THE THERMUS THERMOPHILUS 30S SUBUNIT.
Descriptor:RNA (130-MER), GTP-binding protein era
Authors:Sharma, M.R., Barat, C., Agrawal, R.K.
Deposit date:2005-04-06
Release date:2005-05-17
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
3IY8
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LEISHMANIA TARENTOLAE MITONCHONDRIAL RIBOSOME SMALL SUBUNIT
Descriptor:Leishmania tarentolae mitochondrial small subunit, 30S ribosomal protein S5, 30S ribosomal protein S6, ...
Authors:Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
Deposit date:2009-04-16
Release date:2009-07-07
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
4V61
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HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 30S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME.
Descriptor:16S rRNA, Ribosomal Protein S2, Ribosomal Protein S3, ...
Authors:Sharma, M.R., Wilson, D.N., Datta, P.P., Barat, C., Schluenzen, F., Fucini, P., Agrawal, R.K.
Deposit date:2007-11-09
Release date:2014-07-09
Last modified:2015-03-25
Method:ELECTRON MICROSCOPY (9.4 Å)
Cite:Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins
Proc.Natl.Acad.Sci.Usa, 104, 2007
6DZI
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS 70S C(MINUS) RIBOSOME 70S-MPY COMPLEX
Descriptor:16S rRNA, CONSERVED PROTEIN DOMAIN, 30S ribosomal protein S3, ...
Authors:Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
Deposit date:2018-07-05
Release date:2018-09-26
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZK
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS C(MINUS) 30S RIBOSOMAL SUBUNIT WITH MPY
Descriptor:16S rRNA, Conserved domain protein, 30S ribosomal protein S3, ...
Authors:Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
Deposit date:2018-07-05
Release date:2018-09-19
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZP
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS C(MINUS) 50S RIBOSOMAL SUBUNIT
Descriptor:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
Authors:Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
Deposit date:2018-07-05
Release date:2018-10-03
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1T1M
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BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S RIBOSOME
Descriptor:dodecamer fragment of double helix from 23S rRNA, 42-mer fragment of double helix from 16S rRNA, ribosome recycling factor
Authors:Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1O
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COMPONENTS OF THE CONTROL 70S RIBOSOME TO PROVIDE REFERENCE FOR THE RRF BINDING SITE
Descriptor:dodecamer fragment of double helix from 23S rRNA, 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA
Authors:Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
2BCW
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COORDINATES OF THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L11,C-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L7/L12 AND A PORTION OF THE G' DOMAIN OF ELONGATION FACTOR G, AS FITTED INTO CRYO-EM MAP OF AN ESCHERICHIA COLI 70S*EF-G*GDP*FUSIDIC ACID COMPLEX
Descriptor:50S ribosomal protein L11, 50S ribosomal protein L7/L12, Elongation factor G
Authors:Datta, P.P., Sharma, M.R., Qi, L., Frank, J., Agrawal, R.K.
Deposit date:2005-10-19
Release date:2005-12-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.2 Å)
Cite:Interaction of the G' Domain of Elongation Factor G and the C-Terminal Domain of Ribosomal Protein L7/L12 during Translocation as Revealed by Cryo-EM.
Mol.Cell, 20, 2005
2FTC
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STRUCTURAL MODEL FOR THE LARGE SUBUNIT OF THE MAMMALIAN MITOCHONDRIAL RIBOSOME
Descriptor:Mitochondrial 16S ribosomal RNA, Mitochondrial ribosomal protein L1, mitochondrial ribosomal protein L2, ...
Authors:Mears, J.A., Sharma, M.R., Gutell, R.R., Richardson, P.E., Agrawal, R.K., Harvey, S.C.
Deposit date:2006-01-24
Release date:2006-04-11
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.1 Å)
Cite:A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
J.Mol.Biol., 358, 2006
2R1C
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COORDINATES OF THE THERMUS THERMOPHILUS RIBOSOME BINDING FACTOR A (RBFA) HOMOLOGY MODEL AS FITTED INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:Ribosome-binding factor A
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2R1G
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COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
3JD5
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CRYO-EM STRUCTURE OF THE SMALL SUBUNIT OF THE MAMMALIAN MITOCHONDRIAL RIBOSOME
Descriptor:28S ribosomal RNA, mitochondial, 28S ribosomal protein S2, ...
Authors:Kaushal, P.S., Sharma, M.R., Booth, T.M., Haque, E.M., Tung, C.S., Sanbonmatsu, K.Y., Spremulli, L.L., Agrawal, R.K.
Deposit date:2016-04-08
Release date:2016-07-13
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Proc.Natl.Acad.Sci.USA, 111, 2014
6NEQ
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STRUCTURE OF HUMAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 3 BOUND TO THE SMALL RIBOSOMAL SUBUNIT-CLASS-II
Descriptor:28S ribosomal RNA, mitochondrial, 28S ribosomal protein S24, ...
Authors:Sharma, M., Koripella, R., Agrawal, R.
Deposit date:2018-12-18
Release date:2019-02-27
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit.
iScience, 12, 2019
6NF8
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STRUCTURE OF HUMAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 3 BOUND TO THE SMALL RIBOSOMAL SUBUNIT -CLASS I
Descriptor:28S ribosomal RNA, mitochondria, 28S ribosomal protein S24, ...
Authors:Sharma, M., Koripella, R., Agrawal, R.
Deposit date:2018-12-19
Release date:2019-02-27
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit.
iScience, 12, 2019
2DYJ
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CRYSTAL STRUCTURE OF RIBOSOME-BINDING FACTOR A FROM THERMUS THERMOPHILUS HB8
Descriptor:Ribosome-binding factor A
Authors:Kawazoe, M., Takemoto, C., Nakayama-Ushikoshi, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007