Author results

2GBL
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CRYSTAL STRUCTURE OF FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIC WITH PHOSPHORYLATION SITES
Descriptor:Circadian clock protein kinase kaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Williams, D.R., Pattanayek, S., Xu, Y., Mori, T., Johnson, C.H., Stewart, P.L., Egli, M.
Deposit date:2006-03-10
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods.
Embo J., 25, 2006
2QKE
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WILD TYPE CRYSTAL STRUCTURE OF FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIB FROM THERMOSYNECHOCOCCUS ELONGATUS BP-1
Descriptor:Circadian clock protein kaiB
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2007-07-10
Release date:2008-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation.
Embo J., 27, 2008
3JZM
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE MUTANT T432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase kaiC, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-23
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3K09
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE MUTANT S431D OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase kaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-24
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3K0A
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE MUTANT S431A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase KaiC, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-24
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3K0C
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE DOUBLE MUTANT S431A/T432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase KaiC, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-24
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3K0E
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE MUTANT T426N OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase KaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-24
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3K0F
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE DOUBLE MUTANT T426A/T432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase KaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Egli, M., Pattanayek, S.
Deposit date:2009-09-24
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase.
Plos One, 4, 2009
3DVL
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CRYSTAL STRUCTURE OF FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIC WITH CORRECT GEOMETRY AT PHOSPHORYLATION SITES
Descriptor:Circadian clock protein kinase kaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Egli, M.
Deposit date:2008-07-18
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Full Length Circadian Clock Protein KaiC with Correct Geometry at Phosphorylation Sites
To be Published
1BHJ
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CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)
Descriptor:GLYCINE N-METHYLTRANSFERASE
Authors:Pattanayek, R., Newcomer, M.E., Wagner, C.
Deposit date:1998-06-09
Release date:1999-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of apo-glycine N-methyltransferase (GNMT).
Protein Sci., 7, 1998
1TF7
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CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC
Descriptor:KaiC, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Wang, J., Mori, T., Xu, Y., Johnson, C.H., Egli, M.
Deposit date:2004-05-26
Release date:2004-08-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Visualizing a Circadian Clock Protein; Crystal Structure of KaiC and Functional Insights
Mol.Cell, 15, 2004
1XUW
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STRUCTURAL RATIONALIZATION OF A LARGE DIFFERENCE IN RNA AFFINITY DESPITE A SMALL DIFFERENCE IN CHEMISTRY BETWEEN TWO 2'-O-MODIFIED NUCLEIC ACID ANALOGS
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3')
Authors:Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.
Deposit date:2004-10-26
Release date:2004-12-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues.
J.Am.Chem.Soc., 126, 2004
1XUX
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STRUCTURAL RATIONALIZATION OF A LARGE DIFFERENCE IN RNA AFFINITY DESPITE A SMALL DIFFERENCE IN CHEMISTRY BETWEEN TWO 2'-O-MODIFIED NUCLEIC ACID ANALOGS
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3')
Authors:Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.
Deposit date:2004-10-26
Release date:2004-12-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues.
J.Am.Chem.Soc., 126, 2004
3S1A
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CRYSTAL STRUCTURE OF THE PHOSPHORYLATION-SITE DOUBLE MUTANT S431E/T432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Descriptor:Circadian clock protein kinase kaiC, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Pattanayek, R., Williams, D.W., Rossi, G., Weigand, S., Mori, T., Johnson, C.H., Stewart, P.L., Egli, M.
Deposit date:2011-05-14
Release date:2011-09-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Combined SAXS/EM Based Models of the S. elongatus Post-Translational Circadian Oscillator and its Interactions with the Output His-Kinase SasA.
Plos One, 6, 2011
4G86
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CRYSTAL STRUCTURE OF THE REDOX-ACTIVE COFACTOR DBMIB BOUND TO THE FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIA FROM SYNECHOCOCCUS ELONGATUS
Descriptor:Circadian clock protein kaiA, 2,5-DIBROMO-3-ISOPROPYL-6-METHYLBENZO-1,4-QUINONE, PENTAETHYLENE GLYCOL, ...
Authors:Pattanayek, R., Egli, M.
Deposit date:2012-07-21
Release date:2012-10-24
Last modified:2013-03-06
Method:X-RAY DIFFRACTION (2.387 Å)
Cite:Crystal Structure of the Redox-Active Cofactor Dibromothymoquinone Bound to Circadian Clock Protein KaiA and Structural Basis for Dibromothymoquinone's Ability to Prevent Stimulation of KaiC Phosphorylation by KaiA.
Biochemistry, 51, 2012
4O0M
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CRYSTAL STRUCTURE OF T. ELONGATUS BP-1 CLOCK PROTEIN KAIC
Descriptor:Circadian clock protein kinase KaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Pattanayek, R., Egli, M.
Deposit date:2013-12-13
Release date:2014-05-14
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC
Acta Crystallogr.,Sect.D, D70, 2014
5C5E
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STRUCTURE OF KAIA DIMER IN COMPLEX WITH C-TERMINAL KAIC PEPTIDE AT 2.8 A RESOLUTION
Descriptor:Circadian clock protein KaiA, KaiC C-terminal peptide, 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(sulfanylcarbonyl)amino]benzoic acid
Authors:Pattanayek, R., Egli, M.
Deposit date:2015-06-19
Release date:2015-08-05
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Protein-Protein Interactions in the Cyanobacterial Circadian Clock: Structure of KaiA Dimer in Complex with C-Terminal KaiC Peptides at 2.8 angstrom Resolution.
Biochemistry, 54, 2015
1VTM
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STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION
Descriptor:RNA (5'-R(P*GP*AP*A)-3'), Coat protein
Authors:Stubbs, G., Pattanayek, R.
Deposit date:1992-03-30
Release date:1994-07-31
Last modified:2017-11-29
Method:FIBER DIFFRACTION (3.5 Å)
Cite:Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction.
J.Mol.Biol., 228, 1992
4KSO
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CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIB FROM S.ELONGATUS
Descriptor:Circadian clock protein KaiB
Authors:Pattanayek, R., Egli, M.
Deposit date:2013-05-17
Release date:2013-07-10
Last modified:2013-09-18
Method:X-RAY DIFFRACTION (2.622 Å)
Cite:CryoEM and Molecular Dynamics of the Circadian KaiB-KaiC Complex Indicates KaiB Monomers Interact with KaiC and Block ATP Binding Clefts.
J.Mol.Biol., 425, 2013
1U9I
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CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC WITH PHOSPHORYLATION SITES
Descriptor:KaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Xu, Y., Mori, T., Pattanayek, R., Pattanayek, S., Egli, M., Johnson, C.H.
Deposit date:2004-08-09
Release date:2005-04-19
Last modified:2013-03-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VRO
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SELENIUM-ASSISTED NUCLEIC ACID CRYSTALLOGRAPHY: USE OF PHOSPHOROSELENOATES FOR MAD PHASING OF A DNA STRUCTURE
Descriptor:5'-D(*CP*(GMS)P*CP*GP*CP*G)-3', SPERMINE, MAGNESIUM ION
Authors:Wilds, C.J., Pattanayek, R., Pan, C., Wawrzak, Z., Egli, M.
Deposit date:2005-04-14
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure
J.Am.Chem.Soc., 124, 2002
2TMV
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VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION
Descriptor:RNA (5'-R(P*GP*AP*A)-3'), TMV COAT PROTEIN, CALCIUM ION
Authors:Stubbs, G., Pattanayek, R., Namba, K.
Deposit date:1988-09-15
Release date:1989-01-09
Last modified:2017-11-29
Method:FIBER DIFFRACTION (2.9 Å)
Cite:Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction.
J.Mol.Biol., 208, 1989
4DUG
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CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC E318A MUTANT
Descriptor:Circadian clock protein kinase kaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Egli, M., Mori, T., Pattanayek, R., Xu, Y., Qin, X., Johnson, C.H.
Deposit date:2012-02-21
Release date:2012-03-14
Method:X-RAY DIFFRACTION (3.292 Å)
Cite:Dephosphorylation of the Core Clock Protein KaiC in the Cyanobacterial KaiABC Circadian Oscillator Proceeds via an ATP Synthase Mechanism.
Biochemistry, 51, 2012
4IJM
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CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC A422V MUTANT
Descriptor:Circadian clock protein kinase KaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Egli, M., Pattanayek, R.
Deposit date:2012-12-21
Release date:2013-02-13
Last modified:2013-03-06
Method:X-RAY DIFFRACTION (3.352 Å)
Cite:Loop-Loop Interactions Regulate KaiA-Stimulated KaiC Phosphorylation in the Cyanobacterial KaiABC Circadian Clock.
Biochemistry, 52, 2013
2H9S
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CRYSTAL STRUCTURE OF HOMO-DNA AND NATURE'S CHOICE OF PENTOSE OVER HEXOSE IN THE GENETIC SYSTEM
Descriptor:5'-D(*(XCT)P*(XGU)P*(XAD)P*(XAD)P*(XTH)P*(XTH)P*(XCT)P*(XGU))-3', MAGNESIUM ION
Authors:Egli, M., Pallan, P.S.
Deposit date:2006-06-11
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of homo-DNA and nature's choice of pentose over hexose in the genetic system.
J.Am.Chem.Soc., 128, 2006
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