Summary for 4DUG
| Entry DOI | 10.2210/pdb4dug/pdb |
| Related | 3DVL |
| Descriptor | Circadian clock protein kinase kaiC, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ... (6 entities in total) |
| Functional Keywords | kaia, kaib, atp-binding, biological rhythms, dna-binding, metal-binding, nucleotide-binding, phosphoprotein, repressor, serine/threonine-protein kinase, transcription regulation, auto-kinase, phosphorylation, circadian clock protein, transferase |
| Biological source | Synechococcus elongatus More |
| Total number of polymer chains | 6 |
| Total formula weight | 354961.13 |
| Authors | Egli, M.,Mori, T.,Pattanayek, R.,Xu, Y.,Qin, X.,Johnson, C.H. (deposition date: 2012-02-21, release date: 2012-03-14, Last modification date: 2024-11-27) |
| Primary citation | Egli, M.,Mori, T.,Pattanayek, R.,Xu, Y.,Qin, X.,Johnson, C.H. Dephosphorylation of the Core Clock Protein KaiC in the Cyanobacterial KaiABC Circadian Oscillator Proceeds via an ATP Synthase Mechanism. Biochemistry, 51:1547-1558, 2012 Cited by PubMed Abstract: The circadian clock of the cyanobacterium Synechococcus elongatus can be reconstituted in vitro from three proteins, KaiA, KaiB, and KaiC in the presence of ATP, to tick in a temperature-compensated manner. KaiC, the central cog of this oscillator, forms a homohexamer with 12 ATP molecules bound between its N- and C-terminal domains and exhibits unusual properties. Both the N-terminal (CI) and C-terminal (CII) domains harbor ATPase activity, and the subunit interfaces between CII domains are the sites of autokinase and autophosphatase activities. Hydrolysis of ATP correlates with phosphorylation at threonine and serine sites across subunits in an orchestrated manner, such that first T432 and then S431 are phosphorylated, followed by dephosphorylation of these residues in the same order. Although structural work has provided insight into the mechanisms of ATPase and kinase, the location and mechanism of the phosphatase have remained enigmatic. From the available experimental data based on a range of approaches, including KaiC crystal structures and small-angle X-ray scattering models, metal ion dependence, site-directed mutagenesis (i.e., E318, the general base), and measurements of the associated clock periods, phosphorylation patterns, and dephosphorylation courses as well as a lack of sequence motifs in KaiC that are typically associated with known phosphatases, we hypothesized that KaiCII makes use of the same active site for phosphorylation and dephosphorlyation. We observed that wild-type KaiC (wt-KaiC) exhibits an ATP synthase activity that is significantly reduced in the T432A/S431A mutant. We interpret the first observation as evidence that KaiCII is a phosphotransferase instead of a phosphatase and the second that the enzyme is capable of generating ATP, both from ADP and P(i) (in a reversal of the ATPase reaction) and from ADP and P-T432/P-S431 (dephosphorylation). This new concept regarding the mechanism of dephosphorylation is also supported by the strikingly similar makeups of the active sites at the interfaces between α/β heterodimers of F1-ATPase and between monomeric subunits in the KaiCII hexamer. Several KaiCII residues play a critical role in the relative activities of kinase and ATP synthase, among them R385, which stabilizes the compact form and helps kinase action reach a plateau, and T426, a short-lived phosphorylation site that promotes and affects the order of dephosphorylation. PubMed: 22304631DOI: 10.1021/bi201525n PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (3.292 Å) |
Structure validation
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