Author results

1VEE
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NMR STRUCTURE OF THE HYPOTHETICAL RHODANESE DOMAIN AT4G01050 FROM ARABIDOPSIS THALIANA
Descriptor:proline-rich protein family
Authors:Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-30
Release date:2005-01-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
Protein Sci., 14, 2005
2JTO
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SOLUTION STRUCTURE OF TICK CARBOXYPEPTIDASE INHIBITOR
Descriptor:Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D., Blanco, F.J.
Deposit date:2007-08-03
Release date:2008-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure and dynamics of the two-domain tick carboxypeptidase inhibitor reveal flexibility in its free form and stiffness upon binding to human carboxypeptidase B.
Biochemistry, 47, 2008
1PSY
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STRUCTURE OF RICC3, NMR, 20 STRUCTURES
Descriptor:2S albumin
Authors:Pantoja-Uceda, D., Bruix, M., Gimenez-Gallego, G., Rico, M., Santoro, J.
Deposit date:2003-06-22
Release date:2004-01-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RicC3, a 2S albumin storage protein from Ricinus communis.
Biochemistry, 42, 2003
1S6D
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STRUCTURE IN SOLUTION OF A METHIONINE-RICH 2S ALBUMIN PROTEIN FROM SUNFLOWER SEED
Descriptor:Albumin 8
Authors:Pantoja-Uceda, D., Bruix, M., Shewry, P.R., Santoro, J., Rico, M.
Deposit date:2004-01-23
Release date:2004-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of a Methionine-Rich 2S Albumin from Sunflower Seeds: Relationship to Its Allergenic and Emulsifying Properties.
Biochemistry, 43, 2004
1SM7
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SOLUTION STRUCTURE OF THE RECOMBINANT PRONAPIN PRECURSOR, BNIB.
Descriptor:recombinant Ib pronapin
Authors:Pantoja-Uceda, D., Palomares, O., Bruix, M., Villalba, M., Rodriguez, R., Rico, M., Santoro, J.
Deposit date:2004-03-08
Release date:2005-02-01
Last modified:2013-05-01
Method:SOLUTION NMR
Cite:Solution structure and stability against digestion of rproBnIb, a recombinant 2S albumin from rapeseed: relationship to its allergenic properties.
Biochemistry, 43, 2004
2I9M
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DESIGN OF A-HELIX BASED ON CONFORMATIONALLY RESTRICTED LIBRARIES
Descriptor:MHA6
Authors:Pantoja-Uceda, D., Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Design of minimal independent protein motifs able to fold autonomously
To be Published
2I9N
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DESIGN OF BIVALENT MINIPROTEIN CONSISTING OF TWO INDEPENDENT ELEMENTS, A B-HAIRPIN PEPTIDE AND A-HELIX PEPTIDE, TETHERED BY FOUR GLYCINES
Descriptor:MHB4A peptide
Authors:Pantoja-Uceda, D., Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Design of minimal independt protein motifs able to fold autonomously
To be Published
2I9O
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DESIGN OF BIVALENT MINIPROTEIN CONSISTING OF TWO INDEPENDENT ELEMENTS, A B-HAIRPIN PEPTIDE AND A-HELIX PEPTIDE, TETHERED BY EIGHT GLYCINES
Descriptor:MHB8A peptide
Authors:Pantoja-Uceda, D., Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Design of minimal independt protein motifs able to fold autonomously
To be Published
2KMO
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SOLUTION STRUCTURE OF NATIVE LEECH-DERIVED TRYPTASE INHIBITOR, LDTI
Descriptor:Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D., Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMP
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SOLUTION STRUCTURE OF INTERMEIDATE IIA OF LEECK-DERIVED TRYPTASE INHIBITOR, LDTI.
Descriptor:Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D., Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMQ
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SOLUTION STRUCTURE OF INTERMEDIATE IIB OF LEECH-DERIVED TRYPTASE INHIBITOR, LDTI.
Descriptor:Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D., Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMR
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SOLUTION STRUCTURE OF INTERMEDIATE IIC OF LEECH-DERIVED TRYPTASE INHIBITOR, LDTI.
Descriptor:Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D., Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2K2X
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SOLUTION STRUCTURE OF TICK CARBOXYPEPTIDASE INHIBITOR AT PH 3.5
Descriptor:Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D., Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
2K2Y
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SOLUTION STRUCTURE OF THE FOLDED DOMAIN OF INTERMEDIATE IIIA OF TICK CARBOXYPEPTIDASE INHIBITOR
Descriptor:Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D., Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
2K2Z
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SOLUTION STRUCTURE OF THE FOLDED DOMAIN OF INTERMEDIATE IIIB OF TICK CARBOXYPEPTIDASE INHIBITOR
Descriptor:Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D., Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
5J8T
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NMR STRUCTURE OF EXCALIBUR DOMAIN OF CBPL
Descriptor:Choline binding protein, CALCIUM ION
Authors:Pantoja-Uceda, D., Trevino, M.A., Bruix, M.
Deposit date:2016-04-08
Release date:2017-05-10
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Molecular Choline-bindind Protein L Involved in Pneumococcal Adhesion and Virulence through Exposed Excalibur domanin
To Be Published
1VDY
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NMR STRUCTURE OF THE HYPOTHETICAL ENTH-VHS DOMAIN AT3G16270 FROM ARABIDOPSIS THALIANA
Descriptor:hypothetical protein (RAFL09-17-B18)
Authors:Lopez-Mendez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-25
Release date:2005-05-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
1WQU
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SOLUTION STRUCTURE OF THE HUMAN FES SH2 DOMAIN
Descriptor:Proto-oncogene tyrosine-protein kinase FES/FPS
Authors:Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-02
Release date:2005-06-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes
J.Biomol.NMR, 31, 2005
2LFK
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NMR SOLUTION STRUCTURE OF NATIVE TDPI-SHORT
Descriptor:Tryptase inhibitor
Authors:Bronsoms, S., Pantoja-Uceda, D., Gabrijelcic-Geiger, D., Sanglas, L., Aviles, F., Santoro, J., Sommerhoff, C., Arolas, J.
Deposit date:2011-07-06
Release date:2011-11-09
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Oxidative folding and structural analyses of a kunitz-related inhibitor and its disulfide intermediates: functional implications.
J.Mol.Biol., 414, 2011
2LFL
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NMR SOLUTION STRUCTURE OF THE INTERMEDIATE IIIB OF TDPI-SHORT
Descriptor:Tryptase inhibitor
Authors:Bronsoms, S., Pantoja-Uceda, D., Gabrijelcic-Geiger, D., Sanglas, L., Aviles, F., Santoro, J., Sommerhoff, C., Arolas, J.
Deposit date:2011-07-06
Release date:2011-11-09
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Oxidative folding and structural analyses of a kunitz-related inhibitor and its disulfide intermediates: functional implications.
J.Mol.Biol., 414, 2011
2VNF
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MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4
Descriptor:INHIBITOR OF GROWTH PROTEIN 4, HISTONE H3, SODIUM ION, ...
Authors:Palacios, A., Munoz, I.G., Pantoja-Uceda, D., Marcaida, M.J., Torres, D., Martin-Garcia, J.M., Luque, I., Montoya, G., Blanco, F.J.
Deposit date:2008-02-04
Release date:2008-04-01
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Molecular Basis of Histone H3K4Me3 Recognition by Ing4
J.Biol.Chem., 283, 2008
2KG4
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THREE-DIMENSIONAL STRUCTURE OF HUMAN GADD45ALPHA IN SOLUTION BY NMR
Descriptor:Growth arrest and DNA-damage-inducible protein GADD45 alpha
Authors:Sanchez, R., Pantoja-Uceda, D., Prieto, J., Diercks, T., Campos-Olivas, R., Blanco, F.J.
Deposit date:2009-03-04
Release date:2009-03-31
Last modified:2012-02-01
Method:SOLUTION NMR
Cite:Solution structure of human growth arrest and DNA damage 45alpha (Gadd45alpha) and its interactions with proliferating cell nuclear antigen (PCNA) and Aurora A kinase
J.Biol.Chem., 285, 2010
2N4P
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF TDP-43
Descriptor:TAR DNA-binding protein 43
Authors:Mompean, M., Romano, V., Pantoja-Uceda, D., Stuani, C., Baralle, F., Buratti, E., Laurents, D.V.
Deposit date:2015-06-26
Release date:2016-01-20
Last modified:2016-06-01
Method:SOLUTION NMR
Cite:The TDP-43 N-terminal domain structure at high resolution.
Febs J., 283, 2016
5MCS
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SOLUTION STRUCTURE AND DYNAMICS OF THE OUTER MEMBRANE CYTOCHROME OMCF FROM GEOBACTER SULFURREDUCENS
Descriptor:Lipoprotein cytochrome c, 1 heme-binding site, HEME C
Authors:Dantas, J.M., Silva, M.A., Morgado, L., Pantoja-Uceda, D., Turner, D.L., Bruix, M., Salgueiro, C.A.
Deposit date:2016-11-10
Release date:2017-04-12
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Solution structure and dynamics of the outer membrane cytochrome OmcF from Geobacter sulfurreducens.
Biochim. Biophys. Acta, 1858, 2017
5MRG
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SOLUTION STRUCTURE OF TDP-43 (RESIDUES 1-102)
Descriptor:TAR DNA-binding protein 43
Authors:Mompean, M., Romano, V., Pantoja-Uceda, D., Stuani, C., Baralle, F.E., Laurents, D.V.
Deposit date:2016-12-22
Release date:2017-06-07
Last modified:2017-07-26
Method:SOLUTION NMR
Cite:Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions.
J. Biol. Chem., 292, 2017
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