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1VEE
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BU of 1vee by Molmil
NMR structure of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana
Descriptor: proline-rich protein family
Authors:Pantoja-Uceda, D, Lopez-Mendez, B, Koshiba, S, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Tanaka, A, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-30
Release date:2005-01-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
Protein Sci., 14, 2005
1PSY
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BU of 1psy by Molmil
STRUCTURE OF RicC3, NMR, 20 STRUCTURES
Descriptor: 2S albumin
Authors:Pantoja-Uceda, D, Bruix, M, Gimenez-Gallego, G, Rico, M, Santoro, J.
Deposit date:2003-06-22
Release date:2004-01-13
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of RicC3, a 2S albumin storage protein from Ricinus communis.
Biochemistry, 42, 2003
1S6D
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BU of 1s6d by Molmil
Structure in solution of a methionine-rich 2S Albumin protein from Sunflower Seed
Descriptor: Albumin 8
Authors:Pantoja-Uceda, D, Bruix, M, Shewry, P.R, Santoro, J, Rico, M.
Deposit date:2004-01-23
Release date:2004-06-29
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of a Methionine-Rich 2S Albumin from Sunflower Seeds: Relationship to Its Allergenic and Emulsifying Properties.
Biochemistry, 43, 2004
1SM7
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BU of 1sm7 by Molmil
Solution structure of the recombinant pronapin precursor, BnIb.
Descriptor: recombinant Ib pronapin
Authors:Pantoja-Uceda, D, Palomares, O, Bruix, M, Villalba, M, Rodriguez, R, Rico, M, Santoro, J.
Deposit date:2004-03-08
Release date:2005-02-01
Last modified:2013-05-01
Method:SOLUTION NMR
Cite:Solution structure and stability against digestion of rproBnIb, a recombinant 2S albumin from rapeseed: relationship to its allergenic properties.
Biochemistry, 43, 2004
2JTO
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BU of 2jto by Molmil
Solution Structure of Tick Carboxypeptidase Inhibitor
Descriptor: Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D, Blanco, F.J.
Deposit date:2007-08-03
Release date:2008-07-15
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:The NMR structure and dynamics of the two-domain tick carboxypeptidase inhibitor reveal flexibility in its free form and stiffness upon binding to human carboxypeptidase B.
Biochemistry, 47, 2008
2I9M
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BU of 2i9m by Molmil
Design of a-helix based on conformationally restricted libraries
Descriptor: MHA6
Authors:Pantoja-Uceda, D, Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Design of minimal independent protein motifs able to fold autonomously
To be Published
2I9O
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BU of 2i9o by Molmil
Design of bivalent miniprotein consisting of two independent elements, a b-hairpin peptide and a-helix peptide, tethered by eight glycines
Descriptor: MHB8A peptide
Authors:Pantoja-Uceda, D, Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Design of minimal independt protein motifs able to fold autonomously
To be Published
2I9N
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BU of 2i9n by Molmil
Design of bivalent miniprotein consisting of two independent elements, a b-hairpin peptide and a-helix peptide, tethered by four glycines
Descriptor: MHB4A peptide
Authors:Pantoja-Uceda, D, Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Design of minimal independt protein motifs able to fold autonomously
To be Published
2KMO
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BU of 2kmo by Molmil
Solution structure of native Leech-derived tryptase inhibitor, LDTI
Descriptor: Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D, Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMR
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BU of 2kmr by Molmil
Solution structure of intermediate IIc of Leech-derived tryptase inhibitor, LDTI.
Descriptor: Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D, Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMP
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BU of 2kmp by Molmil
Solution structure of intermeidate IIa of Leeck-derived tryptase inhibitor, LDTI.
Descriptor: Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D, Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
2KMQ
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BU of 2kmq by Molmil
Solution structure of intermediate IIb of Leech-derived tryptase inhibitor, LDTI.
Descriptor: Leech-derived tryptase inhibitor C
Authors:Pantoja-Uceda, D, Santoro, J.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2011-08-10
Method:SOLUTION NMR
Cite:Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
J.Biol.Chem., 284, 2009
5J8T
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BU of 5j8t by Molmil
NMR structure of Excalibur domain of CbpL
Descriptor: CALCIUM ION, Choline binding protein
Authors:Pantoja-Uceda, D, Trevino, M.A, Bruix, M.
Deposit date:2016-04-08
Release date:2017-05-10
Last modified:2019-10-23
Method:SOLUTION NMR
Cite:Molecular Choline-bindind Protein L Involved in Pneumococcal Adhesion and Virulence through Exposed Excalibur domanin
To Be Published
2K2X
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BU of 2k2x by Molmil
Solution Structure of Tick Carboxypeptidase Inhibitor at pH 3.5
Descriptor: Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D, Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
2K2Z
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BU of 2k2z by Molmil
Solution structure of the folded domain of intermediate IIIb of Tick Carboxypeptidase Inhibitor
Descriptor: Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D, Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
2K2Y
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BU of 2k2y by Molmil
Solution structure of the folded domain of intermediate IIIa of Tick Carboxypeptidase Inhibitor
Descriptor: Carboxypeptidase inhibitor
Authors:Pantoja-Uceda, D, Blanco, F.
Deposit date:2008-04-15
Release date:2009-01-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The NMR structures of the major intermediates of the two-domain tick carboxypeptidase inhibitor reveal symmetry in its folding and unfolding pathways.
J.Biol.Chem., 283, 2008
2VNF
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BU of 2vnf by Molmil
MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4
Descriptor: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, HISTONE H3, ...
Authors:Palacios, A, Munoz, I.G, Pantoja-Uceda, D, Marcaida, M.J, Torres, D, Martin-Garcia, J.M, Luque, I, Montoya, G, Blanco, F.J.
Deposit date:2008-02-04
Release date:2008-04-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Molecular Basis of Histone H3K4Me3 Recognition by Ing4
J.Biol.Chem., 283, 2008
1VDY
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BU of 1vdy by Molmil
NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana
Descriptor: hypothetical protein (RAFL09-17-B18)
Authors:Lopez-Mendez, B, Pantoja-Uceda, D, Tomizawa, T, Koshiba, S, Kigawa, T, Shirouzu, M, Terada, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-25
Release date:2005-05-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
1WQU
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BU of 1wqu by Molmil
Solution structure of the human FES SH2 domain
Descriptor: Proto-oncogene tyrosine-protein kinase FES/FPS
Authors:Scott, A, Pantoja-Uceda, D, Koshiba, S, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Tanaka, A, Sugano, S, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-02
Release date:2005-06-14
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes
J.Biomol.NMR, 31, 2005
8PTL
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BU of 8ptl by Molmil
human PHOX2B C-terminal domain including the polyA fragment at 278K
Descriptor: Paired mesoderm homeobox protein 2B
Authors:Anton, R, Trevino, M.A, Pantoja-Uceda, D, Felix, S, Babu, M, Cabrita, E.J, Zweckstetter, M, Tinnefeld, P, Vera, A.M, Oroz, J.
Deposit date:2023-07-14
Release date:2024-03-13
Method:SOLUTION NMR
Cite:Alternative low-populated conformations prompt phase transitions in polyalanine repeat expansions.
Nat Commun, 15, 2024
8PUI
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BU of 8pui by Molmil
human PHOX2B C-terminal domain including the polyA fragment at 298K
Descriptor: Paired mesoderm homeobox protein 2B
Authors:Anton, R, Trevino, M.A, Pantoja-Uceda, D, Felix, S, Babu, M, Cabrita, E.J, Zweckstetter, M, Tinnefeld, P, Vera, A.M, Oroz, J.
Deposit date:2023-07-17
Release date:2024-03-13
Method:SOLUTION NMR
Cite:Alternative low-populated conformations prompt phase transitions in polyalanine repeat expansions.
Nat Commun, 15, 2024
7YWR
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BU of 7ywr by Molmil
NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2
Descriptor: ORF1a polyprotein
Authors:Mompean, M, Laurents, D.V, Pantoja-Uceda, D, Trevino, M.A.
Deposit date:2022-02-14
Release date:2022-03-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2
To Be Published
5MCS
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BU of 5mcs by Molmil
Solution structure and dynamics of the outer membrane cytochrome OmcF from Geobacter sulfurreducens
Descriptor: HEME C, Lipoprotein cytochrome c, 1 heme-binding site
Authors:Dantas, J.M, Silva, M.A, Morgado, L, Pantoja-Uceda, D, Turner, D.L, Bruix, M, Salgueiro, C.A.
Deposit date:2016-11-10
Release date:2017-04-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and dynamics of the outer membrane cytochrome OmcF from Geobacter sulfurreducens.
Biochim. Biophys. Acta, 1858, 2017
5MRG
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BU of 5mrg by Molmil
Solution structure of TDP-43 (residues 1-102)
Descriptor: TAR DNA-binding protein 43
Authors:Mompean, M, Romano, V, Pantoja-Uceda, D, Stuani, C, Baralle, F.E, Laurents, D.V.
Deposit date:2016-12-22
Release date:2017-06-07
Last modified:2017-07-26
Method:SOLUTION NMR
Cite:Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions.
J. Biol. Chem., 292, 2017
8A6I
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BU of 8a6i by Molmil
Structure of the low complexity domain of TDP-43 (fragment 309-350) with methionine sulfoxide modifications
Descriptor: TAR DNA-binding protein 43
Authors:Carrasco, J, Anton, R, Pantoja-Uceda, D, Laurents, D.V, Oroz, J.
Deposit date:2022-06-17
Release date:2023-02-08
Method:SOLUTION NMR
Cite:Metamorphism in TDP-43 prion-like domain determines chaperone recognition.
Nat Commun, 14, 2023

 

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