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1A3G
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BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM ESCHERICHIA COLI
Descriptor:BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Okada, K., Hirotsu, K., Sato, M., Hayashi, H., Kagamiyama, H.
Deposit date:1998-01-21
Release date:1998-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of Escherichia coli branched-chain amino acid aminotransferase at 2.5 A resolution.
J.Biochem.(Tokyo), 121, 1997
1I1K
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CRYSTAL STRUCTURE OF ESCHELICHIA COLI BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE.
Descriptor:BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Okada, K., Hirotsu, K., Hayashi, H., Kagamiyama, H.
Deposit date:2001-02-02
Release date:2001-07-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of Escherichia coli branched-chain amino acid aminotransferase and its complexes with 4-methylvalerate and 2-methylleucine: induced fit and substrate recognition of the enzyme.
Biochemistry, 40, 2001
1I1L
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CRYSTAL STRUCTURE OF ESCHELICHIA COLI BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE.
Descriptor:BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, 2-METHYLLEUCINE
Authors:Okada, K., Hirotsu, K., Hayashi, H., Kagamiyama, H.
Deposit date:2001-02-02
Release date:2001-07-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Escherichia coli branched-chain amino acid aminotransferase and its complexes with 4-methylvalerate and 2-methylleucine: induced fit and substrate recognition of the enzyme.
Biochemistry, 40, 2001
1I1M
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE.
Descriptor:BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, 4-METHYL VALERIC ACID
Authors:Okada, K., Hirotsu, K., Hayashi, H., Kagamiyama, H.
Deposit date:2001-02-02
Release date:2001-07-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Escherichia coli branched-chain amino acid aminotransferase and its complexes with 4-methylvalerate and 2-methylleucine: induced fit and substrate recognition of the enzyme.
Biochemistry, 40, 2001
2F87
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SOLUTION STRUCTURE OF A GAAG TETRALOOP IN SRP RNA FROM PYROCOCCUS FURIOSUS
Descriptor:SRP RNA
Authors:Okada, K., Takahashi, M., Sakamoto, T., Nakamura, K., Kanai, A., Kawai, G
Deposit date:2005-12-02
Release date:2006-08-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus
Nucleosides Nucleotides Nucleic Acids, 25, 2006
3AOV
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH PLP
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-10-07
Release date:2011-10-12
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3AOW
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH AKG
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-10-07
Release date:2011-10-12
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3ATH
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH FOUR AKGS AS SUBSTRATES AND ALLOSTERIC EFFECTORS
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-01-05
Release date:2012-01-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3AV7
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH PMP, KYN AS SUBSTRATES AND KYA AS PRODUCTS
Descriptor:Putative uncharacterized protein PH0207, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, ...
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-02-23
Release date:2012-03-07
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural insight into kynurenic acid excretion mechanisms of kynurenine aminotransferase in the hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
2Z04
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CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE SUBUNIT FROM AQUIFEX AEOLICUS
Descriptor:Phosphoribosylaminoimidazole carboxylase ATPase subunit, SULFATE ION
Authors:Okada, K., Tamura, S., Baba, S., Kanagawa, M., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of phosphoribosylaminoimidazole carboxylase ATPase subunit from Aquifex aeolicus
To be Published
3AW8
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CRYSTAL STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Phosphoribosylaminoimidazole carboxylase, ATPase subunit, ADENOSINE MONOPHOSPHATE, ...
Authors:Okada, K., Tsunoda, S., Taka, H., Baba, S., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-03-15
Release date:2012-04-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria
To be Published
3WX9
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH PMP, GLA, 4AD, 2OG, GLU AND KYA
Descriptor:Putative uncharacterized protein PH0207, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID, ...
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Kanaya, S.
Deposit date:2014-07-28
Release date:2014-09-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, GLA, 4AD, 2OG, GLU and KYA
To be Published
5VAD
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CRYSTAL STRUCTURE OF HUMAN PROLYL-TRNA SYNTHETASE (PRS) IN COMPLEX WITH INHIBITOR
Descriptor:Bifunctional glutamate/proline--tRNA ligase, 3-[(cyclohexanecarbonyl)amino]-N-(2,3-dihydro-1H-inden-2-yl)pyrazine-2-carboxamide, PROLINE, ...
Authors:Okada, K., Skene, R.J.
Deposit date:2017-03-24
Release date:2017-05-31
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Discovery of a novel prolyl-tRNA synthetase inhibitor and elucidation of its binding mode to the ATP site in complex with l-proline.
Biochem. Biophys. Res. Commun., 488, 2017
2FYH
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SOLUTION STRUCTURE OF THE 2'-5' RNA LIGASE-LIKE PROTEIN FROM PYROCOCCUS FURIOSUS
Descriptor:putative integral membrane transport protein
Authors:Okada, K., Matsuda, T., Sakamoto, T., Muto, Y., Yokoyama, S., Kanai, A., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
1UL1
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CRYSTAL STRUCTURE OF THE HUMAN FEN1-PCNA COMPLEX
Descriptor:Flap endonuclease-1, Proliferating cell nuclear antigen, MAGNESIUM ION
Authors:Sakurai, S., Kitano, K., Yamaguchi, H., Hamada, K., Okada, K., Fukuda, K., Uchida, M., Ohtsuka, E., Morioka, H., Hakoshima, T.
Deposit date:2003-09-05
Release date:2005-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for recruitment of human flap endonuclease 1 to PCNA
EMBO J., 24, 2005
1AUG
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CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS
Descriptor:PYROGLUTAMYL PEPTIDASE-1
Authors:Odagaki, Y., Hayashi, A., Okada, K., Hirotsu, K., Kabashima, T., Ito, K., Yoshimoto, T., Tsuru, D., Sato, M., Clardy, J.
Deposit date:1997-08-26
Release date:1999-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease.
Structure Fold.Des., 7, 1999
2HI7
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CRYSTAL STRUCTURE OF DSBA-DSBB-UBIQUINONE COMPLEX
Descriptor:Thiol:disulfide interchange protein dsbA, Disulfide bond formation protein B, ZINC ION, ...
Authors:Inaba, K., Murakami, S., Suzuki, M., Nakagawa, A., Yamashita, E., Okada, K., Ito, K.
Deposit date:2006-06-29
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal Structure of the DsbB-DsbA Complex Reveals a Mechanism of Disulfide Bond Generation
Cell(Cambridge,Mass.), 127, 2006
1BJW
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ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS
Descriptor:ASPARTATE AMINOTRANSFERASE, PHOSPHATE ION
Authors:Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-06-30
Release date:1999-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Biochemistry, 38, 1999
1BKG
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ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE
Descriptor:ASPARTATE AMINOTRANSFERASE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, MALEIC ACID
Authors:Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-07-07
Release date:1999-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Biochemistry, 38, 1999
1G4V
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ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/Y225F
Descriptor:ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mizuguchi, H., Hayashi, H., Okada, K., Miyahara, I., Hirotsu, K., Kagamiyama, H.
Deposit date:2000-10-28
Release date:2000-11-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Strain is more important than electrostatic interaction in controlling the pKa of the catalytic group in aspartate aminotransferase.
Biochemistry, 40, 2001
1G7W
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ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/R386L
Descriptor:ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mizuguchi, H., Hayashi, H., Okada, K., Miyahara, I., Hirotsu, K., Kagamiyama, H.
Deposit date:2000-11-15
Release date:2000-11-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Strain is more important than electrostatic interaction in controlling the pKa of the catalytic group in aspartate aminotransferase.
Biochemistry, 40, 2001
1G7X
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ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/R292L/R386L
Descriptor:ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mizuguchi, H., Hayashi, H., Okada, K., Miyahara, I., Hirotsu, K., Kagamiyama, H.
Deposit date:2000-11-15
Release date:2000-11-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Strain is more important than electrostatic interaction in controlling the pKa of the catalytic group in aspartate aminotransferase.
Biochemistry, 40, 2001
1IS7
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CRYSTAL STRUCTURE OF RAT GTPCHI/GFRP STIMULATORY COMPLEX
Descriptor:GTP Cyclohydrolase I, GTP Cyclohydrolase I Feedback Regulatory Protein, POTASSIUM ION, ...
Authors:Maita, N., Okada, K., Hatakeyama, K., Hakoshima, T.
Deposit date:2001-11-18
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the stimulatory complex of GTP cyclohydrolase I and its feedback regulatory protein GFRP.
Proc.Natl.Acad.Sci.USA, 99, 2002
1IS8
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CRYSTAL STRUCTURE OF RAT GTPCHI/GFRP STIMULATORY COMPLEX PLUS ZN
Descriptor:GTP Cyclohydrolase I, GTP Cyclohydrolase I Feedback Regulatory Protein, ZINC ION, ...
Authors:Maita, N., Okada, K., Hatakeyama, K., Hakoshima, T.
Deposit date:2001-11-18
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the stimulatory complex of GTP cyclohydrolase I and its feedback regulatory protein GFRP.
Proc.Natl.Acad.Sci.USA, 99, 2002
1WPL
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CRYSTAL STRUCTURE OF THE INHIBITORY FORM OF RAT GTP CYCLOHYDROLASE I/GFRP COMPLEX
Descriptor:GTP cyclohydrolase I, GTP cyclohydrolase I feedback regulatory protein, ZINC ION, ...
Authors:Maita, N., Hatakeyama, K., Okada, K., Hakoshima, T.
Deposit date:2004-09-08
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of biopterin-induced inhibition of GTP cyclohydrolase I by GFRP, its feedback regulatory protein
J.Biol.Chem., 279, 2004
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