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1G0D
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CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
Descriptor:PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION
Authors:Noguchi, K., Ishikawa, K., Yokoyama, K., Ohtsuka, T., Nio, N., Suzuki, E.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of red sea bream transglutaminase.
J.Biol.Chem., 276, 2001
3WVD
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56K COMPLEXED WITH TRIMETHYLACETONITRILE, PHOTO-ACTIVATED FOR 50 MIN
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2014-05-17
Release date:2015-06-17
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3WVE
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56K COMPLEXED WITH TRIMETHYLACETONITRILE, BEFORE PHOTO-ACTIVATION
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2014-05-17
Release date:2015-06-17
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X24
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56K COMPLEXED WITH TRIMETHYLACETONITRILE, PHOTO-ACTIVATED FOR 120 MIN
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2014-12-10
Release date:2016-01-27
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X25
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56K COMPLEXED WITH TRIMETHYLACETONITRILE, PHOTO-ACTIVATED FOR 700 MIN
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2014-12-10
Release date:2016-01-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X26
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56K COMPLEXED WITH TRIMETHYLACETONITRILE, PHOTO-ACTIVATED FOR 5 MIN
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2014-12-10
Release date:2016-01-27
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
1X1K
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HOST-GUEST PEPTIDE (PRO-PRO-GLY)4-(PRO-ALLOHYP-GLY)-(PRO-PRO-GLY)4
Descriptor:Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Authors:Jiravanichanun, N., Hongo, C., Wu, G., Noguchi, K., Okuyama, K., Nishino, N., Silva, T.
Deposit date:2005-04-05
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence
Chembiochem, 6, 2005
5ZUI
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CRYSTAL STRUCTURE OF HSP104 FROM CHAETOMIUM THERMOPHILUM
Descriptor:Heat Shock Protein 104, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION
Authors:Hanazono, Y., Inoue, Y., Noguchi, K., Yohda, M., Shinohara, K., Takeda, K., Miki, K.
Deposit date:2018-05-07
Release date:2019-06-19
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Transient splitting of the Hsp104 hexameric ring revealed by near atomic analysis and direct visual observation
To Be Published
2D3F
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CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-PRO-HYP-GLY-(PRO-PRO-GLY)4
Descriptor:COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-PRO-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G., Noguchi, K., Okuyama, K., Ebisuzaki, S., Nishino, N.
Deposit date:2005-09-27
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
2D3H
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CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-HYP-HYP-GLY-(PRO-PRO-GLY)4
Descriptor:COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-HYP-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G., Noguchi, K., Okuyama, K., Mizuno, K., Bachinger, H.P.
Deposit date:2005-09-28
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-02
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A08
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STRUCTURE OF (PPG)4-OOG-(PPG)4, MONOCLINIC, TWINNED CRYSTAL
Descriptor:collagen-like peptide
Authors:Okuyama, K., Morimoto, T., Wu, G., Noguchi, K., Mizuno, K., Bachinger, H.P.
Deposit date:2009-03-06
Release date:2010-01-12
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3A1I
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CRYSTAL STRUCTURE OF RHODOCOCCUS SP. N-771 AMIDASE COMPLEXED WITH BENZAMIDE
Descriptor:Amidase, BENZAMIDE
Authors:Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition
Biochim.Biophys.Acta, 2009
3A1K
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CRYSTAL STRUCTURE OF RHODOCOCCUS SP. N771 AMIDASE
Descriptor:Amidase
Authors:Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
Deposit date:2009-04-09
Release date:2009-11-03
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition
Biochim.Biophys.Acta, 1804, 2010
3ABN
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CRYSTAL STRUCTURE OF (PRO-PRO-GLY)4-HYP-ASP-GLY-(PRO-PRO-GLY)4 AT 1.02 A
Descriptor:collagen-like peptide
Authors:Okuyama, K., Shimura, M., Kawaguchi, T., Noguchi, K., Mizuno, K., Bachinger, H.P.
Deposit date:2009-12-16
Release date:2010-12-01
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure of the collagen model peptide (Pro-Pro-Gly)4 -Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.0 angstrom resolution.
Biopolymers, 99, 2013
1ITT
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AVERAGE CRYSTAL STRUCTURE OF (PRO-PRO-GLY)9 AT 1.0 ANGSTROMS RESOLUTION
Descriptor:COLLAGEN TRIPLE HELIX
Authors:Hongo, C., Nagarajan, V., Noguchi, K., Kamitori, S., Okuyama, K., Tanaka, Y., Nishino, N.
Deposit date:2002-02-03
Release date:2003-02-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Average Crystal Structure of (Pro-Pro-Gly)9 at 1.0 angstroms Resolution
Plym.J., 33, 2001
1V4F
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CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.3A
Descriptor:collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-11-13
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
1V6Q
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CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.3 A
Descriptor:Collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Narita, H., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-12-03
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
1V7H
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CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.26 A
Descriptor:Collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Narita, H., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-12-17
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
2CUO
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COLLAGEN MODEL PEPTIDE (PRO-PRO-GLY)9
Descriptor:COLLAGEN MODEL PEPTIDE (PRO-PRO-GLY)9
Authors:Hongo, C., Noguchi, K., Okuyama, K., Tanaka, Y., Nishino, N.
Deposit date:2005-05-27
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3
J.Biochem.(Tokyo), 138, 2005
3A8G
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT S113A COMPLEXED WITH TRIMETHYLACETONITRILE
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A8H
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT S113A COMPLEXED WITH TRIMETHYLACETAMIDE
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A8L
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CRYSTAL STRUCTURE OF PHOTO-ACTIVATION STATE OF NITRILE HYDRATASE MUTANT S113A
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION
Authors:Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A8M
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CRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT Y72F COMPLEXED WITH TRIMETHYLACETONITRILE
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
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