Author results

2HVQ
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STRUCTURE OF ADENYLATED FULL-LENGTH T4 RNA LIGASE 2
Descriptor:Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region, MAGNESIUM ION
Authors:Nandakumar, J., Lima, C.D.
Deposit date:2006-07-30
Release date:2006-10-17
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
2HVR
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STRUCTURE OF T4 RNA LIGASE 2 WITH NICKED 5'-ADENYLATED NUCLEIC ACID DUPLEX CONTAINING A 3'-DEOXYRIBONUCLEOTIDE AT THE NICK
Descriptor:5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', 5'-R(P*A)-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*T)-3', ...
Authors:Nandakumar, J., Lima, C.D.
Deposit date:2006-07-30
Release date:2006-10-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
2HVS
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STRUCTURE OF T4 RNA LIGASE 2 WITH NICKED 5'-ADENYLATED NUCLEIC ACID DUPLEX CONTAINING A 2'-DEOXYRIBONUCLEOTIDE AT THE NICK
Descriptor:5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', 5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*T)-3', ...
Authors:Nandakumar, J., Lima, C.D.
Deposit date:2006-07-30
Release date:2006-10-17
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
3KJO
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CRYSTAL STRUCTURE OF HPOT1V2-DTRUD(AGGGTTAG)
Descriptor:Protection of telomeres protein 1, DNA/RNA (5'-D(*T)-R(P*U)-D(P*AP*GP*GP*GP*TP*TP*AP*G)-3')
Authors:Nandakumar, J., Cech, T.R., Podell, E.R.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:How telomeric protein POT1 avoids RNA to achieve specificity for single-stranded DNA.
Proc.Natl.Acad.Sci.USA, 107, 2010
3KJP
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CRYSTAL STRUCTURE OF HPOT1V2-GGTTAGGGTTAG
Descriptor:Protection of telomeres protein 1, 5'-D(*G*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'
Authors:Nandakumar, J., Cech, T.R., Podell, E.R.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:How telomeric protein POT1 avoids RNA to achieve specificity for single-stranded DNA.
Proc.Natl.Acad.Sci.USA, 107, 2010
2OWO
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LAST STOP ON THE ROAD TO REPAIR: STRUCTURE OF E.COLI DNA LIGASE BOUND TO NICKED DNA-ADENYLATE
Descriptor:26-MER, 5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*G)-3', ...
Authors:Shuman, S., Nandakumar, J., Nair, P.A.
Deposit date:2007-02-16
Release date:2007-05-15
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Last Stop on the Road to Repair: Structure of E. coli DNA Ligase Bound to Nicked DNA-Adenylate.
Mol.Cell, 26, 2007
5I2X
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CRYSTAL STRUCTURE OF TPP1 K170DEL
Descriptor:Adrenocortical dysplasia protein homolog
Authors:Nandakumar, J., Smith, E.
Deposit date:2016-02-09
Release date:2016-11-09
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional consequences of a disease mutation in the telomere protein TPP1.
Proc.Natl.Acad.Sci.USA, 113, 2016
5I2Y
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CRYSTAL STRUCTURE OF TPP1 K170A
Descriptor:Adrenocortical dysplasia protein homolog
Authors:Nandakumar, J., Smith, E.M.
Deposit date:2016-02-09
Release date:2016-11-09
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional consequences of a disease mutation in the telomere protein TPP1.
Proc.Natl.Acad.Sci.USA, 113, 2016
5WIR
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STRUCTURE OF THE TRF1-TERB1 INTERFACE
Descriptor:TERB1-TBM, Telomeric repeat-binding factor 1
Authors:Nandakumar, J., Pendlebury, D.F., Smith, E.M., Tesmer, V.M.
Deposit date:2017-07-20
Release date:2017-10-18
Last modified:2017-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Dissecting the telomere-inner nuclear membrane interface formed in meiosis.
Nat. Struct. Mol. Biol., 24, 2017
2FAO
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CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LIGD POLYMERASE DOMAIN
Descriptor:probable ATP-dependent DNA ligase, SULFATE ION
Authors:Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAQ
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CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LIGD POLYMERASE DOMAIN WITH ATP AND MANGANESE
Descriptor:probable ATP-dependent DNA ligase, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAR
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CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LIGD POLYMERASE DOMAIN WITH DATP AND MANGANESE
Descriptor:probable ATP-dependent DNA ligase, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2Q2T
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STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE BOUND TO A 5' PHOSPHORYLATED NICK
Descriptor:5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', ...
Authors:Lima, C.D., Nandakumar, J., Nair, P.A., Smith, P., Shuman, S.
Deposit date:2007-05-29
Release date:2007-07-10
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007
2Q2U
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STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX
Descriptor:5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', Chlorella virus DNA ligase
Authors:Lima, C.D., Nandakumar, J., Nair, P.A., Smith, P., Shuman, S.
Deposit date:2007-05-29
Release date:2007-07-10
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007