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2DKN
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CRYSTAL STRUCTURE OF THE 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE FROM PSEUDOMONAS SP. B-0831 COMPLEXED WITH NADH
Descriptor:3-alpha-hydroxysteroid dehydrogenase, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Nakamura, S.
Deposit date:2006-04-12
Release date:2006-08-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Apo- and Holo-structures of 3{alpha}-Hydroxysteroid Dehydrogenase from Pseudomonas sp. B-0831: LOOP-HELIX TRANSITION INDUCED BY COENZYME BINDING
J.Biol.Chem., 281, 2006
2AI5
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SOLUTION STRUCTURE OF CYTOCHROME C552, DETERMINED BY DISTRIBUTED COMPUTING IMPLEMENTATION FOR NMR DATA
Descriptor:Cytochrome c-552, HEME C
Authors:Nakamura, S., Ichiki, S.I., Takashima, H., Uchiyama, S., Hasegawa, J., Kobayashi, Y., Sambongi, Y., Ohkubo, T.
Deposit date:2005-07-29
Release date:2006-05-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of Cytochrome c552 from a Moderate Thermophilic Bacterium, Hydrogenophilus thermoluteolus: Comparative Study on the Thermostability of Cytochrome c
Biochemistry, 45, 2006
2D0S
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CRYSTAL STRUCTURE OF THE CYTOCHROME C552 FROM MODERATE THERMOPHILIC BACTERIUM, HYDROGENOPHILUS THERMOLUTEOLUS
Descriptor:cytochrome c, HEME C
Authors:Nakamura, S., Ichiki, S.I., Takashima, H., Uchiyama, S., Hasegawa, J., Kobayashi, Y., Sambongi, Y., Ohkubo, T.
Deposit date:2005-08-08
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Cytochrome c552 from a Moderate Thermophilic Bacterium, Hydrogenophilus thermoluteolus: Comparative Study on the Thermostability of Cytochrome c
Biochemistry, 45, 2006
6AKE
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CRYSTAL STRUCTURE OF MOUSE CLAUDIN-3 IN COMPLEX WITH C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
Descriptor:Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S., Irie, K., Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-27
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
6AKF
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CRYSTAL STRUCTURE OF MOUSE CLAUDIN-3 P134A MUTANT IN COMPLEX WITH C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
Descriptor:Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S., Irie, K., Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-20
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
6AKG
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CRYSTAL STRUCTURE OF MOUSE CLAUDIN-3 P134G MUTANT IN COMPLEX WITH C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
Descriptor:Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S., Irie, K., Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-20
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
2Z2T
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CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN GP41 FRAGMENT N36 AND FUSION INHIBITOR SC34EK
Descriptor:gp41 fragment N36, Fusion inhibitor peptide SC34EK, ACETIC ACID, ...
Authors:Nakamura, S., Ohkubo, T., Kobayashi, Y.
Deposit date:2007-05-28
Release date:2008-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intrahelical Salt-bridges in a-Helical Peptide Enhances its Binding to the Target: A New Design for HIV-1 Fusion Inhibitors
To be Published
1V5C
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THE CRYSTAL STRUCTURE OF THE INACTIVE FORM CHITOSANASE FROM BACILLUS SP. K17 AT PH3.7
Descriptor:chitosanase, SULFATE ION
Authors:Adachi, W., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., Takenaka, A.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
1V5D
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THE CRYSTAL STRUCTURE OF THE ACTIVE FORM CHITOSANASE FROM BACILLUS SP. K17 AT PH6.4
Descriptor:chitosanase, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
Authors:Adachi, W., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., Takenaka, A.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
2HYK
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THE CRYSTAL STRUCTURE OF AN ENDO-BETA-1,3-GLUCANASE FROM ALKALIPHILIC NOCARDIOPSIS SP.STRAIN F96
Descriptor:Beta-1,3-glucanase, SULFATE ION, CALCIUM ION, ...
Authors:Fibriansah, G., Nakamura, S., Kumasaka, T.
Deposit date:2006-08-07
Release date:2007-10-02
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The 1.3 A crystal structure of a novel endo-beta-1,3-glucanase of glycoside hydrolase family 16 from alkaliphilic Nocardiopsis sp. strain F96.
Proteins, 69, 2007
1VBR
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CRYSTAL STRUCTURE OF COMPLEX XYLANASE 10B FROM THERMOTOGA MARITIMA WITH XYLOBIOSE
Descriptor:endo-1,4-beta-xylanase B, XYLOPYRANOSE, BETA-D-XYLOPYRANOSE, ...
Authors:Ihsanawati, Kumasaka, T., Kaneko, T., Nakamura, S., Tanaka, N.
Deposit date:2004-03-02
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8
Proteins, 61, 2005
1VBU
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CRYSTAL STRUCTURE OF NATIVE XYLANASE 10B FROM THERMOTOGA MARITIMA
Descriptor:endo-1,4-beta-xylanase B, SULFATE ION, ACETIC ACID, ...
Authors:Ihsanawati, Kumasaka, T., Kaneko, T., Nakamura, S., Tanaka, N.
Deposit date:2004-03-02
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8
Proteins, 61, 2005
2DT4
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII A PLANT- AND PROKARYOTE-CONSERVED (PPC) PROTEIN AT 1.60 RESOLUTION
Descriptor:Hypothetical protein PH0802, GLYCEROL
Authors:Lin, L., Nakano, H., Uchiyama, S., Fujimoto, S., Matsunaga, S., Nakamura, S.
Deposit date:2006-07-10
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 A resolution
Proteins, 67, 2007
3AHA
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CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN GP41 FRAGMENTS N36 AND C34 MUTANT N126K/E137Q
Descriptor:Transmembrane protein gp41, (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION
Authors:Izumi, K., Nakamura, S., Nakano, H., Shimura, K., Sakagami, Y., Oishi, S., Uchiyama, S., Ohkubo, T., Kobayashi, Y., Fujii, N., Matsuoka, M., Kodama, E.N.
Deposit date:2010-04-22
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of HIV-1 resistance to a fusion inhibitor, N36, derived from the gp41 amino terminal heptad repeat.
Antiviral Res., 2010
3VOR
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CRYSTAL STRUCTURE ANALYSIS OF THE COFA
Descriptor:CFA/III pilin
Authors:Fukakusa, S., Kawahara, K., Nakamura, S., Iwasita, T., Baba, S., Nishimura, M., Kobayashi, Y., Honda, T., Iida, T., Taniguchi, T., Ohkubo, T.
Deposit date:2012-02-06
Release date:2012-09-26
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing
Acta Crystallogr.,Sect.D, 68, 2012
3WJ4
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIPHENYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
4U4P
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CRYSTAL STRUCTURE OF THE HUMAN CONDENSIN SMC HINGE DOMAIN HETERODIMER WITH SHORT COILED COILS
Descriptor:Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
5H03
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA FROM C. PERFRINGENS
Descriptor:Binary enterotoxin of Clostridium perfringens component a
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
5H04
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA OF A NOVEL BINARY ENTEROTOXIN OF C. PERFRINGENS WITH NADH
Descriptor:Binary enterotoxin of Clostridium perfringens component a, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.825 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
5YPZ
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CRYSTAL STRUCTURE OF MINOR PILIN COFB FROM CFA/III COMPLEXED WITH N-TERMINAL PEPTIDE FRAGMENT OF COFJ
Descriptor:CofB, CofJ
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (3.521 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YQ0
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CRYSTAL STRUCTURE OF SECRETED PROTEIN COFJ FROM ETEC.
Descriptor:CofJ, CALCIUM ION
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor:TRYPSIN, BOWMAN-BIRK TYPE PROTEINASE INHIBITOR
Authors:Tsunogae, Y., Tanaka, I., Yamane, T., Kikkawa, J.-I., Ashida, T., Ishikawa, C., Watanabe, K., Nakamura, S., Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1V53
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THE CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM BACILLUS COAGULANS
Descriptor:3-isopropylmalate dehydrogenase
Authors:Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.
Deposit date:2003-11-20
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
To be Published
1V5B
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THE STRUCTURE OF THE MUTANT, S225A AND E251L, OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM BACILLUS COAGULANS
Descriptor:3-isopropylmalate dehydrogenase, SULFATE ION
Authors:Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.
Deposit date:2003-11-22
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of a highly thermo-stabilized mutant of 3-isopropylmalate dehydrogenase from Bacillus coagulans: An evaluation of local packing density in the hydrophobic core
To be Published