Author results

1ERZ
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CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES
Descriptor:N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE
Authors:Nakai, T., Hasegawa, T., Yamashita, E., Yamamoto, M., Kumasaka, T., Ueki, T., Nanba, H., Ikenaka, Y., Takahashi, S., Sato, M., Tsukihara, T.
Deposit date:2000-04-06
Release date:2001-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.
Structure Fold.Des., 8, 2000
1RCK
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THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor:RIBONUCLEASE F1
Authors:Nakai, T., Yoshikawa, W., Nakamura, H., Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
1RCL
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THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor:RIBONUCLEASE F1
Authors:Nakai, T., Yoshikawa, W., Nakamura, H., Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
1ET0
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CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI
Descriptor:4-AMINO-4-DEOXYCHORISMATE LYASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T., Mizutani, H., Miyahara, I., Hirotsu, K., Takeda, S., Jhee, K.H., Yoshimura, T., Esaki, N.
Deposit date:2000-04-12
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli.
J.Biochem.(Tokyo), 128, 2000
1BJW
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ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS
Descriptor:ASPARTATE AMINOTRANSFERASE, PHOSPHATE ION
Authors:Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-06-30
Release date:1999-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Biochemistry, 38, 1999
1BKG
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ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE
Descriptor:ASPARTATE AMINOTRANSFERASE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, MALEIC ACID
Authors:Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-07-07
Release date:1999-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Biochemistry, 38, 1999
1ONL
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS HB8 H-PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM
Descriptor:glycine cleavage system H protein
Authors:Nakai, T., Ishijima, J., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-02-28
Release date:2003-08-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method.
Acta Crystallogr.,Sect.D, 59, 2003
1UM9
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN APO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, SULFATE ION
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMB
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN HOLO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMC
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYLPENTANOATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMD
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYL-2-OXOPENTANOATE AS AN INTERMEDIATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1WYT
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN APO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYU
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN HOLO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYV
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN INHIBITOR-BOUND FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
2EQ6
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CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakai, T., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8
To be Published
2EQ7
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CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 WITH PSBDO
Descriptor:2-oxoglutarate dehydrogenase E3 component, 2-oxoglutarate dehydrogenase E2 component, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakai, T., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8
To be Published
2EQ8
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CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 WITH PSBDP
Descriptor:Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component, dihydrolipoamide acetyltransferase E2 component, ...
Authors:Nakai, T., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8
To be Published
2EQ9
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CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 WITH PSBDB
Descriptor:Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component, dihydrolipoamide acetyltransferase E2 component, ...
Authors:Nakai, T., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8
To be Published
5X6U
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CRYSTAL STRUCTURE OF HUMAN HETEROPENTAMERIC COMPLEX
Descriptor:Ragulator complex protein LAMTOR3, Ragulator complex protein LAMTOR2, Ragulator complex protein LAMTOR5, ...
Authors:Yonehara, R., Nada, S., Nakai, T., Nakai, M., Kitamura, A., Ogawa, A., Nakatsumi, H., Nakayama, K.I., Li, S., Standley, D.M., Yamashita, E., Nakagawa, A., Okada, M.
Deposit date:2017-02-23
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the assembly of the Ragulator-Rag GTPase complex.
Nat Commun, 8, 2017
5X6V
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CRYSTAL STRUCTURE OF HUMAN HETEROHEPTAMERIC COMPLEX
Descriptor:Ragulator complex protein LAMTOR3, Ragulator complex protein LAMTOR2, Ragulator complex protein LAMTOR5, ...
Authors:Yonehara, R., Nada, S., Nakai, T., Nakai, M., Kitamura, A., Ogawa, A., Nakatsumi, H., Nakayama, K.I., Li, S., Standley, D.M., Yamashita, E., Nakagawa, A., Okada, M.
Deposit date:2017-02-23
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the assembly of the Ragulator-Rag GTPase complex.
Nat Commun, 8, 2017
1GC3
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH TRYPTOPHAN
Descriptor:ASPARTATE AMINOTRANSFERASE, TRYPTOPHAN, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.
Deposit date:2000-07-18
Release date:2001-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
1GC4
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH ASPARTATE
Descriptor:ASPARTATE AMINOTRANSFERASE, ASPARTIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.
Deposit date:2000-07-19
Release date:2001-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
1GCK
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1 COMPLEXED WITH ASPARTATE
Descriptor:ASPARTATE AMINOTRANSFERASE, ASPARTIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.
Deposit date:2000-08-04
Release date:2001-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
5BJ4
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2
Descriptor:PROTEIN (ASPARTATE AMINOTRANSFERASE), PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.
Deposit date:1999-01-11
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
3X3X
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COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS ANAEROBICALLY REDUCED BY PHENYLETHYLAMINE
Descriptor:Phenylethylamine oxidase, COPPER (II) ION, SODIUM ION, ...
Authors:Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
Deposit date:2015-03-10
Release date:2015-08-19
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions
J.Biol.Chem., 2015
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