Author results

1FQY
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STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY
Descriptor:AQUAPORIN-1
Authors:Murata, K., Mitsuoka, K., Hirai, T., Walz, T., Agre, P., Heymann, J.B., Engel, A., Fujiyoshi, Y.
Deposit date:2000-09-07
Release date:2000-10-18
Last modified:2017-10-04
Method:ELECTRON CRYSTALLOGRAPHY (3.8 Å)
Cite:Structural determinants of water permeation through aquaporin-1.
Nature, 407, 2000
1J1N
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STRUCTURE ANALYSIS OF ALGQ2, A MACROMOLECULE(ALGINATE)-BINDING PERIPLASMIC PROTEIN OF SPHINGOMONAS SP. A1., COMPLEXED WITH AN ALGINATE TETRASACCHARIDE
Descriptor:AlgQ2, beta-D-mannuronic acid, alpha-D-mannopyranuronic acid, ...
Authors:Momma, K., Mikami, B., Mishima, Y., Hashimoto, W., Murata, K.
Deposit date:2002-12-11
Release date:2003-06-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution
J.BIOL.CHEM., 278, 2003
2AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY
Descriptor:BACTERIORHODOPSIN, RETINAL, 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]-[1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16-YL]GLYCEROL
Authors:Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.
Deposit date:1998-12-17
Release date:1999-04-27
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution.
J.Mol.Biol., 286, 1999
1HV6
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CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT.
Descriptor:ALGINATE LYASE, 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid, alpha-D-mannopyranuronic acid, ...
Authors:Yoon, H.-J., Hashimoto, W., Miyake, O., Murata, K., Mikami, B.
Deposit date:2001-01-08
Release date:2001-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution.
J.Mol.Biol., 307, 2001
3A1I
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CRYSTAL STRUCTURE OF RHODOCOCCUS SP. N-771 AMIDASE COMPLEXED WITH BENZAMIDE
Descriptor:Amidase, BENZAMIDE
Authors:Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition
Biochim.Biophys.Acta, 2009
3A1K
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CRYSTAL STRUCTURE OF RHODOCOCCUS SP. N771 AMIDASE
Descriptor:Amidase
Authors:Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
Deposit date:2009-04-09
Release date:2009-11-03
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition
Biochim.Biophys.Acta, 1804, 2010
3VR0
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CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PBAB, AN ARCHAEAL PROTEASOME ACTIVATOR
Descriptor:Putative uncharacterized protein, GOLD ION
Authors:Kumoi, K., Satoh, T., Hiromoto, T., Mizushima, T., Kamiya, Y., Noda, M., Uchiyama, S., Murata, K., Yagi, H., Kato, K.
Deposit date:2012-04-02
Release date:2013-04-03
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
5Y4C
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CRYSTAL STRUCTURE OF EFEO-LIKE PROTEIN ALGP7 IN COMPLEX WITH A METAL ION
Descriptor:Alginate-binding protein, GLYCEROL, COPPER (II) ION
Authors:Temtrirath, K., Maruyama, Y., Mikami, B., Murata, K., Hashimoto, W.
Deposit date:2017-08-03
Release date:2017-10-04
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Binding mode of metal ions to the bacterial iron import protein EfeO
Biochem. Biophys. Res. Commun., 493, 2017
1AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
Descriptor:BACTERIORHODOPSIN, RETINAL
Authors:Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.
Deposit date:1997-08-20
Release date:1998-09-16
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Surface of bacteriorhodopsin revealed by high-resolution electron crystallography.
Nature, 389, 1997
1KWH
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STRUCTURE ANALYSIS ALGQ2, A MACROMOLECULE(ALGINATE)-BINDING PERIPLASMIC PROTEIN OF SPHINGOMONAS SP. A1.
Descriptor:Macromolecule-Binding Periplasmic Protein, CALCIUM ION
Authors:Momma, K., Mikami, B., Mishima, Y., Hashimoto, W., Murata, K.
Deposit date:2002-01-29
Release date:2002-02-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution.
J.Mol.Biol., 316, 2002
1Y3H
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CRYSTAL STRUCTURE OF INORGANIC POLYPHOSPHATE/ATP-NAD KINASE FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:Inorganic polyphosphate/ATP-NAD kinase
Authors:Mori, S., Yamasaki, M., Maruyama, Y., Momma, K., kawai, S., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-11-24
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
1Y3I
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CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NAD KINASE-NAD COMPLEX
Descriptor:Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLYCEROL, ...
Authors:Mori, S., Yamasaki, M., Maruyama, Y., Momma, K., Kawai, S., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-11-25
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
Biochem.Biophys.Res.Commun., 327, 2005
1Y3N
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STRUCTURE OF ALGQ1, ALGINATE-BINDING PROTEIN, COMPLEXED WITH AN ALGINATE DISACCHARIDE
Descriptor:AlgQ1, beta-D-mannuronic acid, alpha-D-mannopyranuronic acid, ...
Authors:Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3P
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STRUCTURE OF ALGQ1, ALGINATE-BINDING PROTEIN, COMPLEXED WITH AN ALGINATE TETRASACCHARIDE
Descriptor:AlgQ1, beta-D-mannuronic acid, alpha-D-mannopyranuronic acid, ...
Authors:Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3Q
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STRUCTURE OF ALGQ1, ALGINATE-BINDING PROTEIN
Descriptor:AlgQ1, CALCIUM ION
Authors:Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
2CWS
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CRYSTAL STRUCTURE AT 1.0 A OF ALGINATE LYASE A1-II', A MEMBER OF POLYSACCHARIDE LYASE FAMILY-7
Descriptor:alginate lyase A1-II', SULFATE ION, GLYCEROL
Authors:Yamasaki, M., Ogura, K., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2005-06-25
Release date:2005-11-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:A Structural Basis for Depolymerization of Alginate by Polysaccharide Lyase Family-7
J.Mol.Biol., 352, 2005
2Z42
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' FROM SPHINGOMONAS SP. A1
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2007-06-12
Release date:2008-05-27
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZA9
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CRYSTAL STRUCTURE OF ALGINATE LYASE A1-II' N141C/N199C
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAA
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' H191N/Y284F IN COMPLEX WITH SUBSTRATE (GGMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAB
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN CMPLEX WITH PRODUCT (GGG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN COMPLEX WITH PRODUCT (MMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
3A0N
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CRYSTAL STRUCTURE OF D-GLUCURONIC ACID-BOUND ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-23
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3AFO
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CRYSTAL STRUCTURE OF YEAST NADH KINASE COMPLEXED WITH NADH
Descriptor:NADH kinase POS5, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Ando, T., Ohashi, K., Ochiai, A., Miyagi, H., Kawai, S., Mikami, B., Murata, K.
Deposit date:2010-03-10
Release date:2011-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural factor conferring NADH kinase activity on yeast mitochondrial Pos5
To be Published
3GNE
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CRYSTAL STRUCTURE OF ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, CITRATE ANION, GLYCEROL
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-17
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3IM0
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CRYSTAL STRUCTURE OF CHLORELLA VIRUS VAL-1 SOAKED IN 200MM D-GLUCURONIC ACID, 10% PEG-3350, AND 200MM GLYCINE-NAOH (PH 10.0)
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-08-08
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009