Author results

4YG2
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X-RAY CRYSTAL STRUCTUR OF ESCHERICHIA COLI RNA POLYMERASE SIGMA70 HOLOENZYME
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2015-02-25
Release date:2015-03-18
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:X-ray crystal structure of Escherichia coli RNA polymerase sigma70 holoenzyme
J. Biol. Chem., 288, 2013
1L9U
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THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME AT 4 A RESOLUTION
Descriptor:RNA POLYMERASE, ALPHA SUBUNIT, BETA SUBUNIT, ...
Authors:Murakami, K.S., Masuda, S., Darst, S.A.
Deposit date:2002-03-26
Release date:2002-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution.
Science, 296, 2002
1L9Z
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THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME/FORK-JUNCTION PROMOTER DNA COMPLEX AT 6.5 A RESOLUTION
Descriptor:nontemplate DNA strand, template DNA strand, RNA POLYMERASE, ...
Authors:Murakami, K.S., Masuda, S., Campbell, E.A., Muzzin, O., Darst, S.A.
Deposit date:2002-03-27
Release date:2002-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (6.5 Å)
Cite:Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex.
Science, 296, 2002
2PO4
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X-RAY CRYSTAL STRUCTURE OF POLYMERASE DOMAIN OF THE BACTERIOPHAGE N4 VIRION RNA POLYMERASE
Descriptor:Virion RNA polymerase
Authors:Murakami, K.S., Davydova, E.K., Rothman-Denes, L.B.
Deposit date:2007-04-25
Release date:2008-04-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA polymerase
Proc.Natl.Acad.Sci.USA, 15, 2008
4QJF
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X-RAY CRYSTAL STRUCTURE OF THERMOCUCCUS KODAKARENSIS RNA POLYMERASE RPP4/RPO7 (RPOF/RPOE) COMPLEX
Descriptor:DNA-directed RNA polymerase, subunit E', subunit F
Authors:Murakami, K.S.
Deposit date:2014-06-03
Release date:2014-10-15
Method:X-RAY DIFFRACTION (2.312 Å)
Cite:Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure
Nat.Commun., 2014
5VO8
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X-RAY CRYSTAL STRUCTURE OF A BACTERIAL REITERATIVE TRANSCRIPTION COMPLEX OF PYRG PROMOTER
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S., Shin, Y., Turnbough Jr, C.L., Molodtsov, V.
Deposit date:2017-05-02
Release date:2017-05-24
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5VOI
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X-RAY CRYSTAL STRUCTURE OF BACTERIAL RNA POLYMERASE AND PYRG PROMOTER COMPLEX
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S., Shin, Y., Turnbough Jr, C.L., Molodtsov, V.
Deposit date:2017-05-02
Release date:2017-05-24
Last modified:2017-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2PMZ
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ARCHAEAL RNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS
Descriptor:DNA-directed RNA polymerase subunit A, DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit B, ...
Authors:Murakami, K.S.
Deposit date:2007-04-23
Release date:2008-02-12
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The X-ray crystal structure of RNA polymerase from Archaea
Nature, 451, 2008
3HKZ
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THE X-RAY CRYSTAL STRUCTURE OF RNA POLYMERASE FROM ARCHAEA
Descriptor:DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit B, ...
Authors:Murakami, K.S.
Deposit date:2009-05-26
Release date:2009-06-09
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The X-ray crystal structure of RNA polymerase from Archaea.
Nature, 451, 2008
3P8B
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X-RAY CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS TRANSCRIPTION ELONGATION FACTOR SPT4/5
Descriptor:DNA-directed RNA polymerase, subunit e'', Transcription antitermination protein nusG, ...
Authors:Murakami, K.S., Klein, B.J.
Deposit date:2010-10-13
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:RNA polymerase and transcription elongation factor Spt4/5 complex structure.
Proc.Natl.Acad.Sci.USA, 108, 2011
3Q0A
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X-RAY CRYSTAL STRUCTURE OF THE TRANSCRIPTION INITIATION COMPLEX OF THE N4 MINI-VRNAP WITH P2 PROMOTER: MISMATCH COMPLEX
Descriptor:Virion RNA polymerase, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*A*GP*TP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), PHOSPHATE ION, ...
Authors:Murakami, K.S.
Deposit date:2010-12-15
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides.
Proc.Natl.Acad.Sci.USA, 108, 2011
4FF1
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N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 1 MIN AFTER SOAKING GTP, ATP AND MN
Descriptor:Virion RNA polymerase, Bacteriophag N4 P2 promoter, PHOSPHATE ION
Authors:Murakami, K.S., Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4FF2
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N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 2 MIN AFTER SOAKING GTP, ATP AND MN
Descriptor:Virion RNA polymerase, Bacteriophage N4 P2 promoter, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Murakami, K.S., Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4FF3
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N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 3 MIN AFTER SOAKING GTP, ATP AND MN
Descriptor:Virion RNA polymerase, Bacteriophage N4 P2 promoter, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Murakami, K.S., Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4FF4
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N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 4 MIN AFTER SOAKING GTP, ATP AND MN
Descriptor:Virion RNA polymerase, Bacteriophage N4 P2 promoter, ADENOSINE MONOPHOSPHATE, ...
Authors:Murakami, K.S.
Deposit date:2012-05-31
Release date:2012-12-12
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (2.026 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4JK1
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X-RAY CRYSTAL STRUCTURE OF ESCHERICHIA COLI SIGMA70 HOLOENZYME IN COMPLEX WITH GUANOSINE TETRAPHOSPHATE (PPGPP)
Descriptor:Escherichia coli RNA polymerase alpha subunit, Escherichia coli RNA polymerase beta subunit, Escherichia coli RNA polymerase beta' subunit, ...
Authors:Murakami, K.S.
Deposit date:2013-03-09
Release date:2013-04-10
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Differential regulation by ppGpp versus pppGpp in Escherichia coli.
Nucleic Acids Res., 41, 2013
4JK2
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X-RAY CRYSTAL STRUCTURE OF ESCHERICHIA COLI SIGMA70 HOLOENZYME IN COMPLEX WITH GUANOSINE PENTAPHOSPHATE (PPPGPP)
Descriptor:Escherichia coli RNA polymerase alpha subunit, Escherichia coli RNA polymerase beta subunit, Escherichia coli RNA polymerase beta' subunit, ...
Authors:Murakami, K.S.
Deposit date:2013-03-09
Release date:2013-04-17
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (4.201 Å)
Cite:Differential regulation by ppGpp versus pppGpp in Escherichia coli.
Nucleic Acids Res., 41, 2013
4KMU
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X-RAY CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI RNA POLYMERASE IN COMPLEX WITH RIFAMPIN
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
4KN4
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X-RAY CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI RNA POLYMERASE IN COMPLEX WITH BENZOXAZINORIFAMYCIN-2B
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (3.965 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
4KN7
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X-RAY CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI RNA POLYMERASE IN COMPLEX WITH BENZOXAZINORIFAMYCIN-2C
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (3.686 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
4Q4Z
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THERMUS THERMOPHILUS RNA POLYMERASE DE NOVO TRANSCRIPTION INITIATION COMPLEX
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2014-04-15
Release date:2014-07-30
Last modified:2014-10-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme.
J.Biol.Chem., 289, 2014
4Q5S
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THERMUS THERMOPHILUS RNA POLYMERASE INITIALLY TRANSCRIBING COMPLEX CONTAINING 6-MER RNA
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2014-04-17
Release date:2014-07-09
Last modified:2014-10-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme.
J.Biol.Chem., 289, 2014
5D1O
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ARCHAEAL ATP-DEPENDENT RNA LIGASE - FORM 1
Descriptor:ATP-dependent RNA ligase, ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, ...
Authors:Murakami, K.S.
Deposit date:2015-08-04
Release date:2016-03-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44, 2016
5D1P
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ARCHAEAL ATP-DEPENDENT RNA LIGASE - FORM 2
Descriptor:ATP-dependent RNA ligase, SULFATE ION, MAGNESIUM ION
Authors:Murakami, K.S.
Deposit date:2015-08-04
Release date:2016-03-09
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44, 2016
5VSW
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X-RAY CRYSTAL STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE AND DKSA/PPGPP COMPLEX
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S., Molodtsov, V.
Deposit date:2017-05-12
Release date:2017-06-14
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (4.295 Å)
Cite:Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
Mol. Cell, 69, 2018
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