Author results

2CV4
  • Download 2cv4
  • View 2cv4
Molmil generated image of 2cv4
CRYSTAL STRUCTURE OF AN ARCHAEAL PEROXIREDOXIN FROM THE AEROBIC HYPERTHERMOPHILIC CRENARCHAEON AEROPYRUM PERNIX K1
Descriptor:peroxiredoxin, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ISOPROPYL ALCOHOL
Authors:Mizohata, E., Sakai, H., Fusatomi, E., Terada, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of an Archaeal Peroxiredoxin from the Aerobic Hyperthermophilic Crenarchaeon Aeropyrum pernix K1
J.Mol.Biol., 354, 2005
2CY4
  • Download 2cy4
  • View 2cy4
Molmil generated image of 2cy4
CRYSTAL STRUCTURE OF PHOSPHOTYROSINE BINDING (PTB) DOMAIN OF EPIDERMAL GROWTH FACTOR RECEPTOR PATHWAY SUBSTRATE-8 (EPS8) RELATED PROTEIN 1 FROM MUS MUSCULUS (FORM-1 CRYSTAL)
Descriptor:epidermal growth factor receptor pathway substrate 8-like protein 1, CALCIUM ION
Authors:Mizohata, E., Hamana, H., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-1 crystal)
To be Published
2CY5
  • Download 2cy5
  • View 2cy5
Molmil generated image of 2cy5
CRYSTAL STRUCTURE OF PHOSPHOTYROSINE BINDING (PTB) DOMAIN OF EPIDERMAL GROWTH FACTOR RECEPTOR PATHWAY SUBSTRATE-8 (EPS8) RELATED PROTEIN 1 FROM MUS MUSCULUS (FORM-2 CRYSTAL)
Descriptor:epidermal growth factor receptor pathway substrate 8-like protein 1, CALCIUM ION
Authors:Mizohata, E., Hamana, H., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-2 crystal)
To be Published
1IR1
  • Download 1ir1
  • View 1ir1
Molmil generated image of 1ir1
CRYSTAL STRUCTURE OF SPINACH RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE
Descriptor:Large subunit of Rubisco, Small subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2001-08-31
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
1IR2
  • Download 1ir2
  • View 1ir2
Molmil generated image of 1ir2
CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM GREEN ALGA, CHLAMYDOMONAS REINHARDTII COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE (2-CABP)
Descriptor:Large subunit of Rubisco, Small subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2001-09-03
Release date:2002-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
1WCW
  • Download 1wcw
  • View 1wcw
Molmil generated image of 1wcw
CRYSTAL STRUCTURE OF UROPORPHYRINOGEN III SYNTHASE FROM AN EXTREMELY THERMOPHILIC BACTERIUM THERMUS THERMOPHILUS HB8 (WILD TYPE, NATIVE, FORM-1 CRYSTAL)
Descriptor:Uroporphyrinogen III synthase, GLYCEROL
Authors:Mizohata, E., Matsuura, T., Sakai, H., Murayama, K., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-06
Release date:2005-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of Uroporphyrinogen III Synthase from Thermus thermophilus HB8
To be Published
1WCX
  • Download 1wcx
  • View 1wcx
Molmil generated image of 1wcx
CRYSTAL STRUCTURE OF MUTANT UROPORPHYRINOGEN III SYNTHASE FROM AN EXTREMELY THERMOPHILIC BACTERIUM THERMUS THERMOPHILUS HB8 (L75M/I193M/L248M, SEMET DERIVATIVE, FORM-1 CRYSTAL)
Descriptor:Uroporphyrinogen III Synthase, GLYCEROL
Authors:Mizohata, E., Matsuura, T., Murayama, K., Sakai, H., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-06
Release date:2005-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Uroporphyrinogen III Synthase from Thermus thermophilus HB8
To be Published
1WD7
  • Download 1wd7
  • View 1wd7
Molmil generated image of 1wd7
CRYSTAL STRUCTURE OF UROPORPHYRINOGEN III SYNTHASE FROM AN EXTREMELY THERMOPHILIC BACTERIUM THERMUS THERMOPHILUS HB8 (WILD TYPE, NATIVE, FORM-2 CRYSTAL)
Descriptor:Uroporphyrinogen III Synthase
Authors:Mizohata, E., Matsuura, T., Sakai, H., Murayama, K., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-12
Release date:2004-11-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)
to be published
1WWM
  • Download 1wwm
  • View 1wwm
Molmil generated image of 1wwm
CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN TT2028 FROM AN EXTREMELY THERMOPHILIC BACTERIUM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TT2028
Authors:Mizohata, E., Ushikoshi-Nakayama, R., Terada, T., Murayama, K., Sakai, H., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-07
Release date:2005-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of TT2028 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8
To be Published
2CWX
  • Download 2cwx
  • View 2cwx
Molmil generated image of 2cwx
CRYSTAL STRUCTURE OF OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-1 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-1 crystal)
To be Published
2CX0
  • Download 2cx0
  • View 2cx0
Molmil generated image of 2cx0
CRYSTAL STRUCTURE OF A PUA DOMAIN (APE0525) FROM THE AEROPYRUM PERNIX K1 (SULFATE COMPLEX)
Descriptor:hypothetical protein APE0525, SULFATE ION
Authors:Mizohata, E., Morita, S., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (sulfate complex)
To be Published
2CX1
  • Download 2cx1
  • View 2cx1
Molmil generated image of 2cx1
CRYSTAL STRUCTURE OF A PUA DOMAIN (APE0525) FROM THE AEROPYRUM PERNIX K1 (TARTRATE COMPLEX)
Descriptor:hypothetical protein APE0525, L(+)-TARTARIC ACID
Authors:Mizohata, E., Morita, S., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (tartrate complex)
To be Published
2CX3
  • Download 2cx3
  • View 2cx3
Molmil generated image of 2cx3
CRYSTAL STRUCTURE OF A BACTERIOFERRITIN COMIGRATORY PROTEIN PEROXIREDOXIN FROM THE AEROPYRUM PERNIX K1 (FORM-1 CRYSTAL)
Descriptor:bacterioferritin comigratory protein
Authors:Mizohata, E., Murayama, K., Idaka, M., Tatsuguchi, A., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of a bacterioferritin comigratory protein peroxiredoxin from the Aeropyrum pernix K1 (form-1 crystal)
To be Published
2CX4
  • Download 2cx4
  • View 2cx4
Molmil generated image of 2cx4
CRYSTAL STRUCTURE OF A BACTERIOFERRITIN COMIGRATORY PROTEIN PEROXIREDOXIN FROM THE AEROPYRUM PERNIX K1 (FORM-2 CRYSTAL)
Descriptor:bacterioferritin comigratory protein
Authors:Mizohata, E., Murayama, K., Idaka, M., Tatsuguchi, A., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a bacterioferritin comigratory protein peroxiredoxin from the Aeropyrum pernix K1 (form-2 crystal)
To be Published
2CXE
  • Download 2cxe
  • View 2cxe
Molmil generated image of 2cxe
CRYSTAL STRUCTURE OF OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-28
Release date:2005-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
To be Published
2CZ2
  • Download 2cz2
  • View 2cz2
Molmil generated image of 2cz2
CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE ZETA 1-1 (MALEYLACETOACETATE ISOMERASE) FROM MUS MUSCULUS (FORM-1 CRYSTAL)
Descriptor:Maleylacetoacetate isomerase, GLUTATHIONE, GLYCEROL
Authors:Mizohata, E., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-10
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
To be Published
2CZ3
  • Download 2cz3
  • View 2cz3
Molmil generated image of 2cz3
CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE ZETA 1-1 (MALEYLACETOACETATE ISOMERASE) FROM MUS MUSCULUS (FORM-2 CRYSTAL)
Descriptor:Maleylacetoacetate isomerase
Authors:Mizohata, E., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-10
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-2 crystal)
To be Published
2D4O
  • Download 2d4o
  • View 2d4o
Molmil generated image of 2d4o
CRYSTAL STRUCTURE OF TTHA1254 (I68M MUTANT) FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA1254
Authors:Mizohata, E., Uchikubo, T., Kinoshita, Y., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-21
Release date:2006-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of TTHA1254 (I68M mutant) from Thermus thermophilus HB8
To be Published
2D4P
  • Download 2d4p
  • View 2d4p
Molmil generated image of 2d4p
CRYSTAL STRUCTURE OF TTHA1254 (WILD TYPE) FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA1254
Authors:Mizohata, E., Uchikubo, T., Kinoshita, Y., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-21
Release date:2006-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of TTHA1254 (wild type) from Thermus thermophilus HB8
To be Published
2D69
  • Download 2d69
  • View 2d69
Molmil generated image of 2d69
CRYSTAL STRUCTURE OF THE COMPLEX OF SULFATE ION AND OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase, SULFATE ION
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-11-10
Release date:2006-05-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
To be Published
3WXQ
  • Download 3wxq
  • View 3wxq
Molmil generated image of 3wxq
SERIAL FEMTOSECOND X-RAY STRUCTURE OF HUMAN FATTY ACID-BINDING PROTEIN TYPE-3 (FABP3) IN COMPLEX WITH STEARIC ACID (C18:0) DETERMINED USING X-RAY FREE-ELECTRON LASER AT SACLA
Descriptor:Fatty acid-binding protein, heart, STEARIC ACID
Authors:Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.
Deposit date:2014-08-04
Release date:2014-11-05
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat. Methods, 12, 2015
5B34
  • Download 5b34
  • View 5b34
Molmil generated image of 5b34
SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES IN COMPLEX WITH IODINE-LABELED DETERGENT HAD13A DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA
Descriptor:Bacteriorhodopsin, RETINAL, 2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid, ...
Authors:Mizohata, E., Nakane, T.
Deposit date:2016-02-10
Release date:2016-11-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
5B35
  • Download 5b35
  • View 5b35
Molmil generated image of 5b35
SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA
Descriptor:Bacteriorhodopsin, RETINAL, (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, ...
Authors:Mizohata, E., Nakane, T., Suzuki, M.
Deposit date:2016-02-10
Release date:2016-11-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
1WDD
  • Download 1wdd
  • View 1wdd
Molmil generated image of 1wdd
CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE
Descriptor:Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain C, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Ueno, T., Ishida, H., Inoue, T., Makino, A., Mae, T., Kai, Y.
Deposit date:2004-05-13
Release date:2004-11-13
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
1WV8
  • Download 1wv8
  • View 1wv8
Molmil generated image of 1wv8
CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN TTHA1013 FROM AN EXTREMELY THERMOPHILIC BACTERIUM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA1013
Authors:Mizohata, E., Hattori, M., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-12
Release date:2005-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8
Proteins, 61, 2005