Author results

1IV8
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CRYSTAL STRUCTURE OF MALTOOLIGOSYL TREHALOSE SYNTHASE
Descriptor:MALTOOLIGOSYL TREHALOSE SYNTHASE
Authors:Kobayashi, M., Kubota, M., Matsuura, Y.
Deposit date:2002-03-15
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Refined Structure and Functional Implications of Trehalose Synthase from Sulfolobus acidocaldarius
J.APPL.Glyosci., 50, 2003
4WLC
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STRUCTURE OF DEXTRAN GLUCOSIDASE WITH GLUCOSE
Descriptor:Glucan 1,6-alpha-glucosidase, BETA-D-GLUCOSE, GLYCEROL, ...
Authors:Kobayashi, M., Kato, K., Yao, M.
Deposit date:2014-10-07
Release date:2015-08-26
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
4XB3
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STRUCTURE OF DEXTRAN GLUCOSIDASE
Descriptor:Glucan 1,6-alpha-glucosidase, CALCIUM ION, HEXAETHYLENE GLYCOL
Authors:Kobayashi, M., Kato, K., Yao, M.
Deposit date:2014-12-16
Release date:2015-08-26
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
2K6G
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SOLUTION STRUCTURE OF THE DNA BINDING BRCT DOMAIN FROM THE LARGE SUBUNIT OF HUMAN REPLICATION FACTOR C
Descriptor:Replication factor C subunit 1
Authors:Kobayashi, M., Siegal, G., Ab, E., Bonvin, A.M.J.J.
Deposit date:2008-07-09
Release date:2009-09-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA bound BRCT domain from human Replication Factor C p140
To be Published
2K7F
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HADDOCK CALCULATED MODEL OF THE COMPLEX BETWEEN THE BRCT REGION OF RFC P140 AND DSDNA
Descriptor:Replication factor C subunit 1, 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3'
Authors:Kobayashi, M., Ab, E., Bonvin, A., Siegal, G.
Deposit date:2008-08-10
Release date:2009-09-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex.
J.Biol.Chem., 285, 2010
2EIO
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DESIGN OF DISULFIDE-LINKED THIOREDOXIN DIMERS AND MULTIMERS THROUGH ANALYSIS OF CRYSTAL CONTACTS
Descriptor:Thioredoxin 1
Authors:Kobayashi, M.
Deposit date:2007-03-13
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
2EIQ
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DESIGN OF DISULFIDE-LINKED THIOREDOXIN DIMERS AND MULTIMERS THROUGH ANALYSIS OF CRYSTAL CONTACTS
Descriptor:Thioredoxin 1, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Kobayashi, M.
Deposit date:2007-03-13
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
2EIR
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DESIGN OF DISULFIDE-LINKED THIOREDOXIN DIMERS AND MULTIMERS THROUGH ANALYSIS OF CRYSTAL CONTACTS
Descriptor:Thioredoxin 1, COPPER (II) ION
Authors:Kobayashi, M.
Deposit date:2007-03-13
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
1BQT
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THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor:INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A., Nishimura, S., Ohkubo, T., Kyogoku, Y., Koyama, S., Kobayashi, M., Yasuda, T., Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
3WNK
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CRYSTAL STRUCTURE OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CADMIUM ION, CALCIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNL
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D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOHEXAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNM
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D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOHEPTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNN
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D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOOCTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNO
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D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH CYCLOISOMALTOOCTAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
1IUA
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ULTRA-HIGH RESOLUTION STRUCTURE OF HIPIP FROM THERMOCHROMATIUM TEPIDUM
Descriptor:High-potential iron-sulfur protein, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Liu, L., Nogi, T., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2002-03-01
Release date:2002-03-20
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum.
Acta Crystallogr.,Sect.D, 58, 2002
1EYS
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CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM
Descriptor:PHOTOSYNTHETIC REACTION CENTER, PROTOPORPHYRIN IX CONTAINING FE, B-2-OCTYLGLUCOSIDE, ...
Authors:Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2000-05-08
Release date:2000-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EYT
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CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM
Descriptor:HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER
Authors:Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2000-05-08
Release date:2000-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1TUO
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CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOMANNOMUTASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative phosphomannomutase
Authors:Misaki, S., Suzuki, S., Fujimoto, S., Sakurai, M., Kobayashi, M., Nishijima, K., Kunishima, N., Sugawara, M., Kuroishi, C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-25
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8
TO BE PUBLISHED
4KLZ
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INHIBITION OF SMALL GTPASES BY STABILIZATION OF THE GDP COMPLEX, A NOVEL APPROACH APPLIED TO RIT1, A TARGET FOR RHEUMATOID ARTHRITIS
Descriptor:GTP-binding protein Rit1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Shah, D.M., Kobayashi, M., Keizers, P.H., Tuin, A.W., Ab, E., Manning, L., Rzepiela, A.A., Andrews, M., Hoedemaeker, F.J., Siegal, G.
Deposit date:2013-05-07
Release date:2014-09-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Inhibition of Small GTPases by Stabilization of the GDP Complex, a Novel Approach applied to Rit1, a Target for Rheumatoid Arthritis
To be Published
5GUK
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CRYSTAL STRUCTURE OF APO FORM OF CYCLOLAVANDULYL DIPHOSPHATE SYNTHASE (CLDS) FROM STREPTOMYCES SP. CL190
Descriptor:Cyclolavandulyl diphosphate synthase, CHLORIDE ION
Authors:Tomita, T., Kobayashi, M., Nishiyama, M., Kuzuyama, T.
Deposit date:2016-08-29
Release date:2017-08-30
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization.
Angew. Chem. Int. Ed. Engl., 56, 2017
5GUL
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CRYSTAL STRUCTURE OF TRIS/PPIX2/MG2+ BOUND FORM OF CYCLOLAVANDULYL DIPHOSPHATE SYNTHASE (CLDS) FROM STREPTOMYCES SP. CL190
Descriptor:Cyclolavandulyl diphosphate synthase, PYROPHOSPHATE 2-, MAGNESIUM ION, ...
Authors:Tomita, T., Kobayashi, M., Nishiyama, M., Kuzuyama, T.
Deposit date:2016-08-29
Release date:2017-08-30
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization.
Angew. Chem. Int. Ed. Engl., 56, 2017
1FMJ
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CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP
Descriptor:RETINOL DEHYDRATASE, MERCURY (II) ION, CALCIUM ION, ...
Authors:Pakhomova, S., Kobayashi, M., Buck, J., Newcomer, M.E.
Deposit date:2000-08-17
Release date:2001-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A helical lid converts a sulfotransferase to a dehydratase.
Nat.Struct.Biol., 8, 2001
1FML
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CRYSTAL STRUCTURE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP
Descriptor:RETINOL DEHYDRATASE, CALCIUM ION, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Pakhomova, S., Kobayashi, M., Buck, J., Newcomer, M.E.
Deposit date:2000-08-17
Release date:2001-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A helical lid converts a sulfotransferase to a dehydratase.
Nat.Struct.Biol., 8, 2001
1QBF
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NMR SOLUTION STRUCTURE OF PORCINE PEPTIDE YY
Descriptor:PEPTIDE YY
Authors:Keire, D.A., Kobayashi, M., Solomon, T.E., Reeve Jr., J.R.
Deposit date:1999-04-16
Release date:2000-08-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of monomeric peptide YY supports the functional significance of the PP-fold.
Biochemistry, 39, 2000
1WRG
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LIGHT-HARVESTING COMPLEX 1 BETA SUBUNIT FROM WILD-TYPE RHODOSPIRILLUM RUBRUM
Descriptor:Light-harvesting protein B-880, beta chain
Authors:Wang, Z.-Y., Gokan, K., Kobayashi, M., Nozawa, T.
Deposit date:2004-10-15
Release date:2005-03-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structures of the Core Light-harvesting alpha and beta Polypeptides from Rhodospirillum rubrum: Implications for the Pigment-Protein and Protein-Protein Interactions
J.Mol.Biol., 347, 2005
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