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8WO8
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BU of 8wo8 by Molmil
Crystal Structure of an RNA-binding protein, FAU-1, from Pyrococcus furiosus
Descriptor: Probable ribonuclease FAU-1, RNA (5'-R(P*AP*UP*A)-3')
Authors:Kawai, G, Okada, K, Baba, S, Sato, A, Sakamoto, T, Kanai, A.
Deposit date:2023-10-06
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.
J.Biochem., 175, 2024
2IP4
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BU of 2ip4 by Molmil
Crystal Structure of Glycinamide Ribonucleotide Synthetase from Thermus thermophilus HB8
Descriptor: Phosphoribosylamine--glycine ligase, SULFATE ION
Authors:Sampei, G, Baba, S, Kanagawa, M, Yanai, H, Ishii, T, Kawai, H, Fukai, Y, Ebihara, A, Nakagawa, N, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-11
Release date:2007-10-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
3W7B
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BU of 3w7b by Molmil
Crystal structure of formyltetrahydrofolate deformylase from Thermus thermophilus HB8
Descriptor: Formyltetrahydrofolate deformylase
Authors:Sampei, G, Yanagida, Y, Ogata, N, Kusano, M, Terao, K, Kawai, H, Fukai, Y, Kanagawa, M, Inoue, Y, Baba, S, Kawai, G.
Deposit date:2013-02-28
Release date:2014-01-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structures and reaction mechanisms of the two related enzymes, PurN and PurU
J.Biochem., 154, 2013
1WKS
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BU of 1wks by Molmil
Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Descriptor: 5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'
Authors:Baba, S, Kajikawa, M, Okada, N, Kawai, G.
Deposit date:2004-06-04
Release date:2004-06-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Rna, 10, 2004
8ZNQ
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BU of 8znq by Molmil
Solution structure of the complex of naphthyridine-azaquinolone and an RNA with ACG/AUA motif
Descriptor: N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE, RNA (30-MER)
Authors:Fujiwara, A, Chen, Q, Nakatani, K, Murata, A, Kawai, G.
Deposit date:2024-05-27
Release date:2025-06-04
Method:SOLUTION NMR
Cite:Solution structure of the complex of naphthyridine-azaquinolone and an RNA with ACG/AUA motif
To Be Published
3HSB
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BU of 3hsb by Molmil
Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer
Descriptor: Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')
Authors:Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
6IZP
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BU of 6izp by Molmil
Solution structure of the complex of naphthyridine carbamate dimer and an RNA with UGGAA-UGGAA pentad
Descriptor: 3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate, RNA (29-MER)
Authors:Nagano, K, Shibata, T, Nakatani, K, Kawai, G.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Small molecule targeting r(UGGAA)n disrupts RNA foci and alleviates disease phenotype in Drosophila model
Nat Commun, 12, 2021
9U6Z
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BU of 9u6z by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE AND RNAS WITH A SINGLE BULGE
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, DNA/RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*UP*CP*GP*AP*GP*C)-D(P*C)-R(P*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2025-03-23
Release date:2025-07-09
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues.
J.Biochem., 2025
9U70
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BU of 9u70 by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE AND RNAS WITH A SINGLE BULGE
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, DNA/RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*UP*CP*GP*AP*GP*C)-D(P*G)-R(P*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2025-03-23
Release date:2025-07-09
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues.
J.Biochem., 2025
2FYH
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BU of 2fyh by Molmil
Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus
Descriptor: putative integral membrane transport protein
Authors:Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
8I43
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BU of 8i43 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3GC-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I44
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BU of 8i44 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3AU-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I45
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BU of 8i45 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3GC-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I46
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BU of 8i46 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3AU-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8JHP
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BU of 8jhp by Molmil
Another hairpin structure found in the RNA element involved in piRNA biogenesis
Descriptor: RNA (27-MER)
Authors:Takase, N, Kawai, G.
Deposit date:2023-05-25
Release date:2024-05-29
Method:SOLUTION NMR
Cite:Another hairpin structure found in the RNA element involved in piRNA biogenesis
To Be Published
8K8B
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BU of 8k8b by Molmil
Solution structure of a hairpin RNA with the UUCGA loop
Descriptor: RNA (5'-R(*GP*GP*AP*UP*CP*CP*UP*UP*UP*CP*GP*AP*GP*GP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2023-07-29
Release date:2024-06-05
Method:SOLUTION NMR
Cite:NMR analysis of a loop-bulge structure of UUCGA pentaloop.
Biochem.Biophys.Res.Commun., 691, 2024
1L1W
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BU of 1l1w by Molmil
NMR structure of a SRP19 binding domain in human SRP RNA
Descriptor: SRP19 binding domain of SRP RNA
Authors:Sakamoto, T, Morita, S, Tabata, K, Nakamura, K, Kawai, G.
Deposit date:2002-02-20
Release date:2002-05-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a SRP19 binding domain in human SRP RNA.
J.Biochem.(Tokyo), 132, 2002
9IO0
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BU of 9io0 by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*GP*GP*UP*UP*UP*CP*GP*AP*CP*CP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2024-07-08
Release date:2025-04-02
Last modified:2025-06-04
Method:SOLUTION NMR
Cite:Specific Interaction between a Fluoroquinolone Derivative, KG022, and RNAs with a Single Bulge.
Biochemistry, 64, 2025
9IOU
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BU of 9iou by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*CP*GP*UP*UP*UP*CP*GP*AP*CP*GP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2024-07-09
Release date:2025-04-02
Last modified:2025-06-04
Method:SOLUTION NMR
Cite:Specific Interaction between a Fluoroquinolone Derivative, KG022, and RNAs with a Single Bulge.
Biochemistry, 64, 2025
9IOS
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BU of 9ios by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*AP*GP*UP*UP*UP*CP*GP*AP*CP*UP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2024-07-09
Release date:2025-04-02
Last modified:2025-06-04
Method:SOLUTION NMR
Cite:Specific Interaction between a Fluoroquinolone Derivative, KG022, and RNAs with a Single Bulge.
Biochemistry, 64, 2025
9IO1
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BU of 9io1 by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT RESIDUES
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*AP*CP*UP*UP*UP*CP*GP*AP*GP*UP*CP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2024-07-08
Release date:2025-04-02
Last modified:2025-06-04
Method:SOLUTION NMR
Cite:Specific Interaction between a Fluoroquinolone Derivative, KG022, and RNAs with a Single Bulge.
Biochemistry, 64, 2025
9IOR
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BU of 9ior by Molmil
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*AP*CP*UP*UP*UP*CP*GP*AP*GP*UP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2024-07-09
Release date:2025-04-02
Last modified:2025-06-04
Method:SOLUTION NMR
Cite:Specific Interaction between a Fluoroquinolone Derivative, KG022, and RNAs with a Single Bulge.
Biochemistry, 64, 2025
1K2G
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BU of 1k2g by Molmil
Structural basis for the 3'-terminal guanosine recognition by the group I intron
Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
8JBD
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BU of 8jbd by Molmil
Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB
Descriptor: Adenylosuccinate lyase
Authors:Nemoto, N, Kawai, G, Sampei, G.
Deposit date:2023-05-08
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 79, 2023
2YRX
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BU of 2yrx by Molmil
Crystal structure of GAR synthetase from Geobacillus kaustophilus
Descriptor: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, Phosphoribosylglycinamide synthetase
Authors:Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010

 

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