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8WO8
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BU of 8wo8 by Molmil
Crystal Structure of an RNA-binding protein, FAU-1, from Pyrococcus furiosus
Descriptor: Probable ribonuclease FAU-1, RNA (5'-R(P*AP*UP*A)-3')
Authors:Kawai, G, Okada, K, Baba, S, Sato, A, Sakamoto, T, Kanai, A.
Deposit date:2023-10-06
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.
J.Biochem., 2024
1AA9
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BU of 1aa9 by Molmil
HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: C-HA-RAS, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Ito, Y, Yamasaki, Y, Muto, Y, Kawai, G, Nishimura, S, Miyazawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-27
Release date:1997-07-29
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
2IP4
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BU of 2ip4 by Molmil
Crystal Structure of Glycinamide Ribonucleotide Synthetase from Thermus thermophilus HB8
Descriptor: Phosphoribosylamine--glycine ligase, SULFATE ION
Authors:Sampei, G, Baba, S, Kanagawa, M, Yanai, H, Ishii, T, Kawai, H, Fukai, Y, Ebihara, A, Nakagawa, N, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-11
Release date:2007-10-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
3HSB
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BU of 3hsb by Molmil
Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer
Descriptor: Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')
Authors:Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
2RVO
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BU of 2rvo by Molmil
Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
Descriptor: RNA (34-MER)
Authors:Otsu, M, Norose, N, Arai, N, Terao, R, Kajikawa, M, Okada, N, Kawai, G.
Deposit date:2016-02-03
Release date:2017-02-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.
J. Biochem., 162, 2017
8I43
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BU of 8i43 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3GC-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2023-04-12
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I45
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BU of 8i45 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3GC-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2023-04-12
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I44
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BU of 8i44 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3AU-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2023-04-12
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
8I46
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BU of 8i46 by Molmil
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3AU-uucg
Authors:Ichijo, R, Kamimura, T, Kawai, G.
Deposit date:2023-01-18
Release date:2023-03-29
Last modified:2023-04-12
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues.
Front Mol Biosci, 10, 2023
1FNX
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BU of 1fnx by Molmil
SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT
Descriptor: AU-RICH RNA ELEMENT, HU ANTIGEN C
Authors:Inoue, M, Hirao, M, Kasashima, K, Kim, I.-S, Kawai, G, Kigawa, T, Sakamoto, H, Muto, Y, Yokoyama, S.
Deposit date:2000-08-24
Release date:2003-06-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation
To be Published, 2000
6J61
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BU of 6j61 by Molmil
Crystal Structure of Thymidylate Synthase, Thy1, from Thermus thermophilus having an Extra C Terminal Domain
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent thymidylate synthase, PHOSPHATE ION
Authors:Ogawa, A, Sampei, G, Kawai, G.
Deposit date:2019-01-12
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the flavin-dependent thymidylate synthase Thy1 from Thermus thermophilus with an extra C-terminal domain.
Acta Crystallogr.,Sect.F, 75, 2019
3W7B
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BU of 3w7b by Molmil
Crystal structure of formyltetrahydrofolate deformylase from Thermus thermophilus HB8
Descriptor: Formyltetrahydrofolate deformylase
Authors:Sampei, G, Yanagida, Y, Ogata, N, Kusano, M, Terao, K, Kawai, H, Fukai, Y, Kanagawa, M, Inoue, Y, Baba, S, Kawai, G.
Deposit date:2013-02-28
Release date:2014-01-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structures and reaction mechanisms of the two related enzymes, PurN and PurU
J.Biochem., 154, 2013
8JBD
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BU of 8jbd by Molmil
Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB
Descriptor: Adenylosuccinate lyase
Authors:Nemoto, N, Kawai, G, Sampei, G.
Deposit date:2023-05-08
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 79, 2023
2RRC
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BU of 2rrc by Molmil
Solution Structure of RNA aptamer against AML1 Runt domain
Descriptor: 5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
Authors:Nomura, Y, Fujiwara, K, Chiba, M, Fukunaga, J, Tanaka, Y, Iibuchi, H, Tanaka, T, Nakamura, Y, Kawai, G, Kozu, T, Sakamoto, T.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
5AVM
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BU of 5avm by Molmil
Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
Descriptor: Phosphoribosylformylglycinamidine cyclo-ligase, SULFATE ION
Authors:Kanagawa, M, Baba, S, Watanabe, Y, Nakagawa, N, Ebihara, A, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2015-06-23
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus
J.Biochem., 159, 2016
3AV3
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BU of 3av3 by Molmil
Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus
Descriptor: MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase
Authors:Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-02-18
Release date:2012-03-07
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
3AUF
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BU of 3auf by Molmil
Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii
Descriptor: Glycinamide ribonucleotide transformylase 1
Authors:Kanagawa, M, Baba, S, Nagira, T, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-02-03
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
6JRQ
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BU of 6jrq by Molmil
Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus
Descriptor: 1,2-ETHANEDIOL, Adenylosuccinate synthetase, INOSINIC ACID
Authors:Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2019-04-05
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus HB8
To Be Published
2FDT
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BU of 2fdt by Molmil
Solution structure of a conserved RNA hairpin of eel LINE UnaL2
Descriptor: 36-mer
Authors:Nomura, Y, Baba, S, Nakazato, S, Sakamoto, T, Kajikawa, M, Okada, N, Kawai, G.
Deposit date:2005-12-14
Release date:2006-12-05
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2
Nucleic Acids Res., 34, 2006
2FYH
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BU of 2fyh by Molmil
Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus
Descriptor: putative integral membrane transport protein
Authors:Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
2CUW
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BU of 2cuw by Molmil
Crystal Structure of Thermus thermophilus PurS, one of the subunits of Formylglycinamide Ribonucleotide Amidotransferase in the purine biosynthetic pathway
Descriptor: PurS
Authors:Yanai, H, Kanagawa, M, Sampei, G, Kawai, G, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-30
Release date:2005-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Thermus thermophilus PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
To be Published
1IT1
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BU of 1it1 by Molmil
Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Descriptor: HEME C, cytochrome c3
Authors:Harada, E, Fukuoka, Y, Ohmura, T, Fukunishi, A, Kawai, G, Fujiwara, T, Akutsu, H.
Deposit date:2001-12-29
Release date:2002-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.
J.Mol.Biol., 319, 2002
1J1H
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BU of 1j1h by Molmil
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
Descriptor: Small Protein B
Authors:Someya, T, Nameki, N, Hosoi, H, Suzuki, S, Hatanaka, H, Fujii, M, Terada, T, Shirouzu, M, Inoue, Y, Shibata, T, Kuramitsu, S, Yokoyama, S, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-04
Release date:2003-02-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
FEBS Lett., 535, 2003
1K2G
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BU of 1k2g by Molmil
Structural basis for the 3'-terminal guanosine recognition by the group I intron
Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
1L1W
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BU of 1l1w by Molmil
NMR structure of a SRP19 binding domain in human SRP RNA
Descriptor: SRP19 binding domain of SRP RNA
Authors:Sakamoto, T, Morita, S, Tabata, K, Nakamura, K, Kawai, G.
Deposit date:2002-02-20
Release date:2002-05-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of a SRP19 binding domain in human SRP RNA.
J.Biochem.(Tokyo), 132, 2002

 

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