Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3N8T
DownloadVisualize
BU of 3n8t by Molmil
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis
Descriptor: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, alpha-amylase, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N98
DownloadVisualize
BU of 3n98 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives
Descriptor: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
DownloadVisualize
BU of 3n92 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
Descriptor: alpha-amylase, GH57 family, beta-D-glucopyranose
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3VX3
DownloadVisualize
BU of 3vx3 by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein HypB from Thermococcus kodakarensis KOD1
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ...
Authors:Sasaki, D, Watanabe, S, Miki, K.
Deposit date:2012-09-09
Release date:2013-02-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and Structure of a Novel Archaeal HypB for [NiFe] Hydrogenase Maturation
J.Mol.Biol., 425, 2013
5XSW
DownloadVisualize
BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
4QJV
DownloadVisualize
BU of 4qjv by Molmil
The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis
Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
Authors:Hirata, A, Murakami, K.S.
Deposit date:2014-06-05
Release date:2014-10-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
4QIW
DownloadVisualize
BU of 4qiw by Molmil
Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis
Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ...
Authors:Jun, S.-H, Murakami, K.S.
Deposit date:2014-06-02
Release date:2014-10-08
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.
Nat Commun, 5, 2014
6BUX
DownloadVisualize
BU of 6bux by Molmil
CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA
Descriptor: Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), GLYCEROL, ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2017-12-11
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.
Nat Commun, 9, 2018
5DHD
DownloadVisualize
BU of 5dhd by Molmil
Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Chitinase, SULFATE ION
Authors:Hibi, M, Niwa, S, Takeda, K, Miki, K.
Deposit date:2015-08-30
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016
5IJA
DownloadVisualize
BU of 5ija by Molmil
[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis
Descriptor: Hydrogenase-specific maturation endopeptidase
Authors:Kwon, S, Nishitani, Y, Watanabe, S, Miki, K.
Deposit date:2016-03-01
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
5DHE
DownloadVisualize
BU of 5dhe by Molmil
Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1
Descriptor: Chitinase, GLYCEROL
Authors:Niwa, S, Hibi, M, Takeda, K, Miki, K.
Deposit date:2015-08-30
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016
7UCK
DownloadVisualize
BU of 7uck by Molmil
80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
Descriptor: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
Authors:Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022
7UCJ
DownloadVisualize
BU of 7ucj by Molmil
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Descriptor: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
Authors:Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022
6WMB
DownloadVisualize
BU of 6wmb by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 8.0)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMA
DownloadVisualize
BU of 6wma by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 7.6)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, CHLORIDE ION, ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMC
DownloadVisualize
BU of 6wmc by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 9.0)
Descriptor: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE-3 LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2020-04-21
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
5AUP
DownloadVisualize
BU of 5aup by Molmil
Crystal structure of the HypAB complex
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUN
DownloadVisualize
BU of 5aun by Molmil
Crystal structure of the HypAB-Ni complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUO
DownloadVisualize
BU of 5auo by Molmil
Crystal structure of the HypAB-Ni complex (AMPPCP)
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUQ
DownloadVisualize
BU of 5auq by Molmil
Crystal structure of ATPase-type HypB in the nucleotide free state
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
8EOK
DownloadVisualize
BU of 8eok by Molmil
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Activated factor Xa heavy chain, Complement C3 beta chain, ...
Authors:Andersen, J.F, Lei, H.
Deposit date:2022-10-03
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
5HEE
DownloadVisualize
BU of 5hee by Molmil
Crystal structure of the TK2203 protein
Descriptor: GLYCEROL, Putative uncharacterized protein, TK2203 protein, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2016-01-06
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
Acta Crystallogr.,Sect.F, 72, 2016
8EO2
DownloadVisualize
BU of 8eo2 by Molmil
Lufaxin a bifunctional inhibitor of complement and coagulation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, ...
Authors:Andersen, J.F, Strayer, E.C.
Deposit date:2022-10-01
Release date:2023-08-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
8ENU
DownloadVisualize
BU of 8enu by Molmil
Structure of the C3bB proconvertase in complex with lufaxin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C3 beta chain, Complement C3b alpha' chain, ...
Authors:Andersen, J.F, Lei, H.
Deposit date:2022-09-30
Release date:2023-08-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
5YY0
DownloadVisualize
BU of 5yy0 by Molmil
Crystal structure of the HyhL-HypA complex (form II)
Descriptor: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.243 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon