Author results

5Z8B
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TRUNCATED N-ACETYLGLUCOSAMINYL TRANSFERASE KFIA FROM E. COLI K5 STRAIN APO FORM
Descriptor:KfiA protein
Authors:Hori, H., Kakuta, Y.
Deposit date:2018-01-31
Release date:2019-02-06
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crysta structure of N-acetylglucosaminyl transferase KfiA from E. coli K5 strain
To Be Published
5X2B
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CRYSTAL STRUCTURE OF MOUSE SULFOTRANSFERASE SULT7A1 COMPLEXED WITH PAP
Descriptor:Sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, CALCIUM ION, ...
Authors:Kanekiyo, M., Teramoto, T., Kakuta, Y.
Deposit date:2017-01-31
Release date:2018-03-28
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of mouse sulfotransferase SULT7A1 complexed with PAP
To Be Published
5WRI
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-1 COMPLEXED WITH PAP AND C4 PEPTIDE
Descriptor:Protein-tyrosine sulfotransferase 1, ASP-PHE-GLU-ASP-TYR-GLU-PHE-ASP, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Tanaka, S., Nishiyori, T., Kojo, H., Otsubo, R., Kakuta, Y.
Deposit date:2016-12-02
Release date:2017-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017
5WRJ
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-1 COMPLEXED WITH PAP AND GASTRIN PEPTIDE
Descriptor:Protein-tyrosine sulfotransferase 1, gastrin peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Tanaka, S., Nishiyori, T., Kojo, H., Otsubo, R., Kakuta, Y.
Deposit date:2016-12-02
Release date:2017-09-06
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017
5AX7
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YEAST PYRUVYLTRANSFERASE PVG1P
Descriptor:Pyruvyl transferase 1, ZINC ION
Authors:Kanekiyo, M., Yoritsune, K., Yoshinaga, S., Higuchi, Y., Takegawa, K., Kakuta, Y.
Deposit date:2015-07-16
Release date:2016-06-08
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide
Sci Rep, 6, 2016
3WYZ
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ON ARCHAEAL HOMOLOGS OF THE HUMAN RNASE P PROTEIN RPP30 IN THE HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARENSIS
Descriptor:Ribonuclease P protein component 3, GLYCEROL
Authors:Suematsu, K., Ueda, T., Nakashima, T., Kakuta, Y., Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
3WZ0
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ON ARCHAEAL HOMOLOGS OF THE HUMAN RNASE P PROTEINS POP5 AND RPP30 IN THE HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARENSIS
Descriptor:Ribonuclease P protein component 3, Ribonuclease P protein component 2
Authors:Suematsu, K., Ueda, T., Nakashima, T., Kakuta, Y., Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
3VSM
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VSN
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, IODIDE ION, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VU2
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STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) COMPLEXED WITH MALTOPENTAOSE FROM ORYZA SATIVA L
Descriptor:1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic, BETA-D-GLUCOSE, ...
Authors:Chaen, K., Kakuta, Y., Kimura, M.
Deposit date:2012-06-14
Release date:2013-05-08
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.
Biochem.Biophys.Res.Commun., 424, 2012
3VKK
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CRYSTAL STRUCTURE OF THE COVALENT INTERMEDIATE OF HUMAN CYTOSOLIC BETA-GLUCOSIDASE-MANNOSE COMPLEX
Descriptor:Cytosolic beta-glucosidase, GLYCEROL, CHLORIDE ION, ...
Authors:Noguchi, J., Hayashi, Y., Okino, N., Ito, M., Kimura, M., Kakuta, Y.
Deposit date:2011-11-17
Release date:2012-11-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for inhibition mechanism of human cytosolic beta-glucosidase by monnoside
To be Published
3VK9
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CRYSTAL STRUCTURE OF DELTA-CLASS GLUTATHIONE TRANSFERASE FROM SILKMOTH
Descriptor:Glutathione S-transferase delta, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
3AP1
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP AND C4 PEPTIDE
Descriptor:Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
3AP2
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP,C4 PEPTIDE, AND PHOSPHATE ION
Descriptor:Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2: Insights into substrate-binding and catalysis of post-translational protein tyrosine sulfation
To be Published
3AP3
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP
Descriptor:Protein-tyrosine sulfotransferase 2, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
3AMK
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STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L
Descriptor:Os06g0726400 protein, PHOSPHATE ION, GLYCEROL
Authors:Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AML
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STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L
Descriptor:Os06g0726400 protein, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AY8
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GLUTATHIONE S-TRANSFERASE UNCLASSIFIED 2 FROM BOMBYX MORI
Descriptor:Glutathione S-transferase, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y., Yamamoto, K.
Deposit date:2011-05-02
Release date:2011-09-07
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
2ZQ5
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CRYSTAL STRUCTURE OF SULFOTRANSFERASE STF1 FROM MYCOBACTERIUM TUBERCULOSIS H37RV (TYPE1 FORM)
Descriptor:Putative uncharacterized protein
Authors:Tanaka, S., Kimura, M., Kakuta, Y.
Deposit date:2008-08-06
Release date:2009-09-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of sulfotransferase STF1 from Mycobacterium tuberculosis H37Rv
To be Published
2ZWI
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CRYSTAL STRUCTURE OF ALPHA/BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE FROM A LUMINOUS MARINE BACTERIUM, PHOTOBACTERIUM PHOSPHOREUM
Descriptor:Alpha-/beta-galactoside alpha-2,3-sialyltransferase, CYTIDINE-5'-MONOPHOSPHATE, ZINC ION, ...
Authors:Iwatani, T., Okino, N., Sakakura, M., Kajiwara, H., Ichikawa, M., Takakura, Y., Kimura, M., Ito, M., Yamamoto, T., Kakuta, Y.
Deposit date:2008-12-05
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of alpha/beta-galactoside alpha2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum
Febs Lett., 583, 2009
2ZYT
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, GLYCEROL
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYU
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS AND P-NITROPHENYL SULFATE
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, 4-nitrophenyl sulfate, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYV
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS/PAP AND P-NITROPHENOL
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, P-NITROPHENOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYW
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAP AND P-NITROPHENOL, OBTAINED BY TWO-STEP SOAKING METHOD
Descriptor:Tyrosine-ester sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, P-NITROPHENOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZKC
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CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEX WITH BISPHENOL Z
Descriptor:Estrogen-related receptor gamma, 4,4'-cyclohexane-1,1-diyldiphenol, GLYCEROL
Authors:Matsushima, A., Kakuta, Y., Teramoto, T., Shimohigashi, Y.
Deposit date:2008-03-14
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z
To be Published