Author results

1NST
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THE SULFOTRANSFERASE DOMAIN OF HUMAN HAPARIN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
Descriptor:HEPARAN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Pedersen, L.C., Negishi, M.
Deposit date:1998-09-07
Release date:1999-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the sulfotransferase domain of human heparan sulfate N-deacetylase/ N-sulfotransferase 1.
J.Biol.Chem., 274, 1999
1I7H
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CRYSTAL STURCUTURE OF FDX
Descriptor:FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER
Authors:Kakuta, Y., Horio, T., Takahashi, Y., Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
2Z4T
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CRYSTAL STRUCTURE OF VIBRIONACEAE PHOTOBACTERIUM SP. JT-ISH-224 2,6-SIALYLTRANSFERASE IN A TERNARY COMPLEX WITH DONOR PRODUCT CMP AND ACCEPTER SUBSTRATE LACTOSE
Descriptor:Beta-galactoside alpha-2,6-sialyltransferase, ALPHA-LACTOSE, PHOSPHATE ION, ...
Authors:Kakuta, Y., Okino, N., Kajiwara, H., Ichikawa, M., Takakura, Y., Ito, M., Yamamoto, T.
Deposit date:2007-06-25
Release date:2008-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition
Glycobiology, 18, 2008
3AY8
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GLUTATHIONE S-TRANSFERASE UNCLASSIFIED 2 FROM BOMBYX MORI
Descriptor:Glutathione S-transferase, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y., Yamamoto, K.
Deposit date:2011-05-02
Release date:2011-09-07
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
1AQU
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ESTROGEN SULFOTRANSFERASE WITH BOUND INACTIVE COFACTOR PAP AND 17-BETA ESTRADIOL
Descriptor:ESTROGEN SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE, ESTRADIOL
Authors:Kakuta, Y., Negishi, M., Pedersen, L.C.
Deposit date:1997-08-01
Release date:1998-10-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1AQY
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ESTROGEN SULFOTRANSFERASE WITH PAP
Descriptor:ESTROGEN SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Pedersen, L.G., Carter, C.W., Negishi, M., Pedersen, L.C.
Deposit date:1997-08-04
Release date:1998-10-28
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1BO6
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ESTROGEN SULFOTRANSFERASE WITH INACTIVE COFACTOR PAP AND VANADATE
Descriptor:ESTROGEN SULFOTRANSFERASE, VANADATE ION, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Negishi, M., Pedersen, L.C.
Deposit date:1998-08-10
Release date:1999-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The sulfuryl transfer mechanism. Crystal structure of a vanadate complex of estrogen sulfotransferase and mutational analysis.
J.Biol.Chem., 273, 1998
1VB5
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CRYSTAL STRUCTURE ANALYSIS OF THE PYROCOCCUS HORIKOSHII OT3 TRANSLATION INITIATION FACTOR EIF-2B
Descriptor:translation initiation factor eIF-2B
Authors:Kakuta, Y., Tahara, M., Maetani, S., Kimura, M.
Deposit date:2004-02-22
Release date:2004-12-07
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B
Biochem.Biophys.Res.Commun., 319, 2004
1X0T
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CRYSTAL STRUCTURE OF RIBONUCLEASE P PROTEIN PH1601P FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Ribonuclease P protein component 4, ZINC ION
Authors:Kakuta, Y., Ishimatsu, I., Numata, T., Kimura, K., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2005-03-29
Release date:2005-11-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1X0U
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CRYSTAL STRUCTURE OF THE CARBOXYL TRANSFERASE SUBUNIT OF PUTATIVE PCC OF SULFOLOBUS TOKODAII
Descriptor:hypothetical methylmalonyl-CoA decarboxylase alpha subunit
Authors:Kakuta, Y., Sueda, S., Kondo, H.
Deposit date:2005-03-29
Release date:2006-07-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii
To be Published
2E9L
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CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE (KLOTHO-RELATED PROTE:KLRP) COMPLEX WITH GLUCOSE AND FATTY ACIDS
Descriptor:Cytosolic beta-glucosidase, BETA-D-GLUCOSE, PALMITIC ACID, ...
Authors:Kakuta, Y., Hayashi, Y., Okino, N., Ito, M.
Deposit date:2007-01-25
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
2E9M
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CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE (KLOTHO-RELATED PROTE:KLRP) COMPLEX WITH GALACTOSE AND FATTY ACIDS
Descriptor:Cytosolic beta-glucosidase, BETA-D-GALACTOSE, PALMITIC ACID, ...
Authors:Kakuta, Y., Hayashi, Y., Okino, N., Ito, M.
Deposit date:2007-01-25
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
2ZSC
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TAMAVIDIN2, NOVEL AVIDIN-LIKE BIOTIN-BINDING PROTEINS FROM AN EDIBLE MUSHROOM
Descriptor:Tamavidin2, GLYCEROL, BIOTIN, ...
Authors:Kakuta, Y., Okino, N., Ito, M., Yamamoto, T., Takakura, Y.
Deposit date:2008-09-05
Release date:2009-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tamavidins--novel avidin-like biotin-binding proteins from the Tamogitake mushroom
Febs J., 276, 2009
1UAI
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CRYSTAL STRUCTURE OF THE ALGINATE LYASE FROM CORYNEBACTERIUM SP.
Descriptor:polyguluronate lyase
Authors:Kakuta, Y.
Deposit date:2003-03-11
Release date:2004-07-27
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the alginate (poly alpha-l-guluronate) lyase from Corynebacterium sp. at 1.2 A resolution
J.Mol.Biol., 345, 2005
2ZWS
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CRYSTAL STRUCTURE ANALYSIS OF NEUTRAL CERAMIDASE FROM PSEUDOMONAS AERUGINOSA
Descriptor:Neutral ceramidase, ZINC ION, MAGNESIUM ION, ...
Authors:Kakuta, Y., Okino, N., Inoue, T., Okano, H., Ito, M.
Deposit date:2008-12-17
Release date:2009-03-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
3VK9
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CRYSTAL STRUCTURE OF DELTA-CLASS GLUTATHIONE TRANSFERASE FROM SILKMOTH
Descriptor:Glutathione S-transferase delta, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
3AMK
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STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L
Descriptor:Os06g0726400 protein, PHOSPHATE ION, GLYCEROL
Authors:Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AML
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STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L
Descriptor:Os06g0726400 protein, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
1IRM
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CRYSTAL STRUCTURE OF APO HEME OXYGENASE-1
Descriptor:apo heme oxygenase-1
Authors:Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M., Fukuyama, K.
Deposit date:2001-10-09
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of rat apo-heme oxygenase-1 (HO-1): mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms
Biochemistry, 41, 2002
3VSM
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VSN
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, IODIDE ION, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
1IR6
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CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MANGANESE
Descriptor:exonuclease RecJ, MANGANESE (II) ION
Authors:Yamagata, A., Kakuta, Y., Masui, R., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-09-11
Release date:2002-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
3AP1
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP AND C4 PEPTIDE
Descriptor:Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
3AP2
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP,C4 PEPTIDE, AND PHOSPHATE ION
Descriptor:Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2: Insights into substrate-binding and catalysis of post-translational protein tyrosine sulfation
To be Published
3AP3
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CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP
Descriptor:Protein-tyrosine sulfotransferase 2, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013