Author results

5GJE
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THREE-DIMENSIONAL RECONSTRUCTION OF HUMAN LRP6 ECTODOMAIN COMPLEXED WITH DKK1
Descriptor:Low-density lipoprotein receptor-related protein 6, Dickkopf-related protein 1, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Matoba, K., Mihara, E., Tamura-Kawakami, K., Hirai, H., Thompson, S., Iwasaki, K., Takagi, J.
Deposit date:2016-06-29
Release date:2017-01-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Conformational Freedom of the LRP6 Ectodomain Is Regulated by N-glycosylation and the Binding of the Wnt Antagonist Dkk1
Cell Rep, 18, 2017
3VKF
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CRYSTAL STRUCTURE OF NEUREXIN 1BETA/NEUROLIGIN 1 COMPLEX
Descriptor:Neuroligin-1, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
Deposit date:2011-11-15
Release date:2012-08-01
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin.
Cell Rep, 2, 2012
1IQ4
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5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
Descriptor:50S RIBOSOMAL PROTEIN L5
Authors:Nakashima, T., Yao, M., Kawamura, S., Iwasaki, K., Kimura, M., Tanaka, I.
Deposit date:2001-06-13
Release date:2001-06-27
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
6AB5
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CRYO-EM STRUCTURE OF T=1 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB6
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CRYO-EM STRUCTURE OF T=3 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6IB3
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STRUCTURE OF LEFT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2018-11-28
Release date:2019-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
To Be Published
6IB4
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STRUCTURE OF RIGHT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2018-11-28
Release date:2019-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
To Be Published
4V60
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THE STRUCTURE OF RAT LIVER VAULT AT 3.5 ANGSTROM RESOLUTION
Descriptor:Major vault protein
Authors:Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
Deposit date:2008-10-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structure of rat liver vault at 3.5 angstrom resolution
Science, 323, 2009
2ZU0
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CRYSTAL STRUCTURE OF SUFC-SUFD COMPLEX INVOLVED IN THE IRON-SULFUR CLUSTER BIOSYNTHESIS
Descriptor:Protein sufD, Probable ATP-dependent transporter sufC, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Wada, K.
Deposit date:2008-10-11
Release date:2009-03-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of SufC(2)-SufD(2) complex
J.Mol.Biol., 387, 2009
5AWF
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CRYSTAL STRUCTURE OF SUFB-SUFC-SUFD COMPLEX FROM ESCHERICHIA COLI
Descriptor:FeS cluster assembly protein SufB, FeS cluster assembly protein SufD, Probable ATP-dependent transporter SufC
Authors:Hirabayashi, K., Wada, K.
Deposit date:2015-07-03
Release date:2015-11-11
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.957 Å)
Cite:Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis
J.Biol.Chem., 290, 2015
5AWG
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CRYSTAL STRUCTURE OF HG-BOUND SUFB-SUFC-SUFD COMPLEX FROM ESCHERICHIA COLI
Descriptor:FeS cluster assembly protein SufB, FeS cluster assembly protein SufD, Probable ATP-dependent transporter SufC, ...
Authors:Hirabayashi, K., Wada, K.
Deposit date:2015-07-03
Release date:2015-11-11
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (4.278 Å)
Cite:Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis
J.Biol.Chem., 290, 2015
3ALP
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CELL ADHESION PROTEIN
Descriptor:Poliovirus receptor-related protein 1, CITRIC ACID, HEXANE-1,6-DIOL
Authors:Narita, H., Nakagawa, A., Suzuki, M.
Deposit date:2010-08-05
Release date:2011-02-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions
J.Biol.Chem., 286, 2011
2DDU
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CRYSTAL STRUCTURE OF THE THIRD REPEAT DOMAIN OF REELIN
Descriptor:reelin, CALCIUM ION, CHLORIDE ION, ...
Authors:Nogi, T., Yasui, N., Takagi, J.
Deposit date:2006-02-03
Release date:2006-09-26
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography
Embo J., 25, 2006
3ASI
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ALPHA-NEUREXIN-1 ECTODOMAIN FRAGMENT; LNS5-EGF3-LNS6
Descriptor:Neurexin-1-alpha, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tanaka, H., Nogi, T., Yasui, N., Takagi, J.
Deposit date:2010-12-13
Release date:2011-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
Plos One, 6, 2011
5YKU
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH ZN IONS
Descriptor:Capsid protein, ZINC ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKV
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKX
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH CD ION
Descriptor:Capsid protein, CADMIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKZ
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P21)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL0
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P212121)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL1
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T=1 SUBVIRAL PARTICLE OF PENAEUS VANNAMEI NODAVIRUS CAPSID PROTEIN DELETION MUTANT (DELTA 1-37 & 251-368)
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-12-12
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
4HL8
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RE-REFINEMENT OF THE VAULT RIBONUCLEOPROTEIN PARTICLE
Descriptor:Major vault protein
Authors:Casanas, A., Querol-Audi, J., Guerra, P., Pous, J., Tanaka, H., Tsukihara, T., Verdaguer, V., Fita, I.
Deposit date:2012-10-16
Release date:2013-06-05
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach.
Acta Crystallogr.,Sect.D, 69, 2013