Author results

4YM5
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING 6-4PP (INSIDE)
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.
Deposit date:2015-03-06
Release date:2015-12-02
Method:X-RAY DIFFRACTION (4.005 Å)
Cite:Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome
Sci Rep, 5, 2015
4YM6
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING 6-4PP (OUTSIDE)
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.
Deposit date:2015-03-06
Release date:2015-12-02
Method:X-RAY DIFFRACTION (3.514 Å)
Cite:Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome
Sci Rep, 5, 2015
1DHH
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-10-18
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1DRN
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-11-15
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1NAO
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SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RNA (5'-R(*GP*GP*AP*GP*AP*UP*GP*AP*C)-3'), DNA/RNA (5'-R(*OMGP*OMUP*OMC)-D(P*AP*TP*CP*T)-R(P*OMCP*OMC)-3')
Authors:Nishizaki, T., Iwai, S., Ohtsuka, E., Nakamura, H.
Deposit date:1996-03-29
Release date:1997-01-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the center.
Biochemistry, 36, 1997
1VAS
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ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor:DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
4A08
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 13 BP CPD-DUPLEX (PURINE AT D-1 POSITION) AT 3.0 A RESOLUTION (CPD 1)
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, 5'-D(*AP*CP*GP*CP*GP*AP*(TTD)P*GP*CP*GP*CP*CP*C)-3', ...
Authors:Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A09
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 15 BP CPD-DUPLEX (PURINE AT D-1 POSITION) AT 3.1 A RESOLUTION (CPD 2)
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*GP)-3', ...
Authors:Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A0A
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP CPD-DUPLEX (PYRIMIDINE AT D-1 POSITION) AT 3.6 A RESOLUTION (CPD 3)
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3', ...
Authors:Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A0B
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP CPD-DUPLEX (PYRIMIDINE AT D-1 POSITION) AT 3.8 A RESOLUTION (CPD 4)
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, 5'-D(*DGP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3', ...
Authors:Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4GLE
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SACUVDE IN COMPLEX WITH 6-4PP-CONTAINING DNA
Descriptor:5'-D(*CP*GP*TP*CP*GP*TP*CP*AP*AP*GP*GP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*CP*CP*(64T)P*(5PY)P*GP*AP*CP*GP*AP*CP*G)-3', UV damage endonuclease, ...
Authors:Meulenbroek, E.M., Peron Cane, C., Jala, I., Iwai, S., Moolenaar, G.F., Goosen, N., Pannu, N.S.
Deposit date:2012-08-14
Release date:2012-11-21
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions.
Nucleic Acids Res., 41, 2013
4A0K
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STRUCTURE OF DDB1-DDB2-CUL4A-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX
Descriptor:CULLIN-4A, E3 UBIQUITIN-PROTEIN LIGASE RBX1, DNA DAMAGE-BINDING PROTEIN 1, ...
Authors:Fischer, E.S., Scrima, A., Gut, H., Thoma, N.H.
Deposit date:2011-09-09
Release date:2011-12-14
Method:X-RAY DIFFRACTION (5.93 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation.
Cell(Cambridge,Mass.), 147, 2011
4A0L
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STRUCTURE OF DDB1-DDB2-CUL4B-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, CULLIN-4B, ...
Authors:Fischer, E.S., Scrima, A., Gut, H., Thoma, N.H.
Deposit date:2011-09-09
Release date:2011-12-14
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (7.4 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation.
Cell(Cambridge,Mass.), 147, 2011
4A11
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STRUCTURE OF THE HSDDB1-HSCSA COMPLEX
Descriptor:DNA DAMAGE-BINDING PROTEIN 1, DNA EXCISION REPAIR PROTEIN ERCC-8
Authors:Bohm, K., Scrima, A., Fischer, E.S., Gut, H., Thomae, N.H.
Deposit date:2011-09-13
Release date:2011-12-07
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation.
Cell(Cambridge,Mass.), 147, 2011
3FY4
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(6-4) PHOTOLYASE CRYSTAL STRUCTURE
Descriptor:6-4 photolyase, IMIDAZOLE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Hitomi, K., Arvai, A.S., Tainer, J.A., Getzoff, E.D.
Deposit date:2009-01-21
Release date:2009-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Proc.Natl.Acad.Sci.USA, 106, 2009
5B24
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THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING CYCLOBUTANE PYRIMIDINE DIMER
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Horikoshi, N., Tachiwana, H., Kagawa, W., Osakabe, A., Kurumizaka, H.
Deposit date:2015-12-31
Release date:2016-03-02
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the nucleosome containing ultraviolet light-induced cyclobutane pyrimidine dimer
Biochem.Biophys.Res.Commun., 471, 2016
1IRY
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SOLUTION STRUCTURE OF THE HMTH1, A NUCLEOTIDE POOL SANITIZATION ENZYME
Descriptor:hMTH1
Authors:Mishima, M., Itoh, N., Sakai, Y., Kamiya, H., Nakabeppu, Y., Shirakawa, M.
Deposit date:2001-10-25
Release date:2003-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates
J.Biol.Chem., 279, 2004
2FWR
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STRUCTURE OF ARCHAEOGLOBUS FULGIDIS XPB
Descriptor:DNA repair protein RAD25, PHOSPHATE ION, ISOPROPYL ALCOHOL
Authors:Fan, L., Arvai, A.S., Tainer, J.A.
Deposit date:2006-02-02
Release date:2006-04-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
Mol.Cell, 22, 2006
2FZ4
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CRYSTAL STRUCTURE OF THE N-TERMINAL HALF OF ARCHAEOGLOBUS FULGIDUS XPB
Descriptor:DNA repair protein RAD25
Authors:Fan, L., Tainer, J.A.
Deposit date:2006-02-09
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair.
Mol.Cell, 22, 2006
2FZL
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STRUCTURE OF C-TERMINAL DOMAIN OF ARCHAEOGLOBUS FULGIDUS XPB
Descriptor:DNA repair protein RAD25, XPB, ISOPROPYL ALCOHOL
Authors:Fan, L., Arvai, A.S., Tainer, J.A.
Deposit date:2006-02-09
Release date:2006-04-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
Mol.Cell, 22, 2006
2J6V
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CRYSTAL STRUCTURE OF THE DNA REPAIR ENZYME UV DAMAGE ENDONUCLEASE
Descriptor:UV ENDONUCLEASE, MANGANESE (II) ION, PHOSPHATE ION
Authors:Paspaleva, K., Thomassen, E.A.J., Pannu, N.S., Goossen, N., Abrahams, J.P.
Deposit date:2006-10-04
Release date:2007-10-16
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of the DNA Repair Enzyme Ultraviolet Damage Endonuclease.
Structure, 15, 2007
3EI1
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 14 BP 6-4 PHOTOPRODUCT CONTAINING DNA-DUPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, 5'-D(*DAP*DCP*DGP*DCP*DGP*DAP*(64T)P*(5PY)P*DGP*DCP*DGP*DCP*DCP*DC)-3', ...
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI2
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP ABASIC SITE CONTAINING DNA-DUPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, 5'-D(*DAP*DAP*DAP*DTP*DGP*DAP*DAP*DTP*(3DR)P*DAP*DAP*DGP*DCP*DAP*DGP*DG)-3', ...
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI3
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STRUCTURE OF THE HSDDB1-DRDDB2 COMPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, TETRAETHYLENE GLYCOL
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI4
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STRUCTURE OF THE HSDDB1-HSDDB2 COMPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2
Authors:Scrima, A., Pavletich, N.P., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
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