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3WKW
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CRYSTAL STRUCTURE OF GH127 BETA-L-ARABINOFURANOSIDASE HYPBA1 FROM BIFIDOBACTERIUM LONGUM LIGAND FREE FORM
分子名称:Non-reducing end beta-L-arabinofuranosidase
著者Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.
登録日2013-11-01
公開日2014-04-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of glycoside hydrolase family 127 beta-l-arabinofuranosidase from Bifidobacterium longum
Biochem.Biophys.Res.Commun., 2014
3WKX
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CRYSTAL STRUCTURE OF GH127 BETA-L-ARABINOFURANOSIDASE HYPBA1 FROM BIFIDOBACTERIUM LONGUM ARABINOSE COMPLEX FORM
分子名称:Non-reducing end beta-L-arabinofuranosidase, beta-L-arabinofuranose, ZINC ION
著者Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.
登録日2013-11-01
公開日2014-04-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of glycoside hydrolase family 127 beta-l-arabinofuranosidase from Bifidobacterium longum
Biochem.Biophys.Res.Commun., 2014
4YVG
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CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH ADOMET
分子名称:tRNA (guanine-N(1)-)-methyltransferase, S-ADENOSYLMETHIONINE
著者Ito, T., Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2015-08-19
実験手法X-RAY DIFFRACTION (1.549 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4H04
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LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM
分子名称:Lacto-N-biosidase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
著者Ito, T., Katayama, T., Wada, J., Suzuki, R., Ashida, H., Wakagi, T., Yamamoto, K., Fushinobu, S.
登録日2012-09-07
公開日2013-03-20
最終更新日2013-07-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
4JAW
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPLEXED WITH LNB-THIAZOLINE
分子名称:Lacto-N-biosidase, BETA-D-GALACTOSE, 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, ...
著者Ito, T., Katayama, T., Stubbs, K.A., Fushinobu, S.
登録日2013-02-19
公開日2013-03-20
最終更新日2013-07-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
1Q8K
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SOLUTION STRUCTURE OF ALPHA SUBUNIT OF HUMAN EIF2
分子名称:Eukaryotic translation initiation factor 2 subunit 1
著者Ito, T., Marintchev, A., Wagner, G.
登録日2003-08-21
公開日2004-09-07
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution Structure of Human Initiation Factor eIF2alpha Reveals Homology to the Elongation Factor eEF1B.
STRUCTURE, 12, 2004
1U2F
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SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN OF HU2AF65
分子名称:PROTEIN (SPLICING FACTOR U2AF 65 KD SUBUNIT)
著者Ito, T., Muto, Y., Green, M.R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-05-26
公開日1999-08-20
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65)).
EMBO J., 18, 1999
2U2F
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SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN OF HU2AF65
分子名称:PROTEIN (SPLICING FACTOR U2AF 65 KD SUBUNIT)
著者Ito, T., Muto, Y., Green, M.R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-05-26
公開日1999-08-20
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65)).
EMBO J., 18, 1999
3AFH
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CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA NONDISCRIMINATING GLUTAMYL-TRNA SYNTHETASE IN COMPLEX WITH A GLUTAMYL-AMP ANALOG
分子名称:Glutamyl-tRNA synthetase 2, O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE
著者Ito, T., Yokoyama, S.
登録日2010-03-01
公開日2010-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of nondiscriminating glutamyl-tRNA synthetase from Thermotoga maritima
Acta Crystallogr.,Sect.D, 66, 2010
3AKZ
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CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA NONDISCRIMINATING GLUTAMYL-TRNA SYNTHETASE IN COMPLEX WITH TRNAGLN AND A GLUTAMYL-AMP ANALOG
分子名称:Glutamyl-tRNA synthetase 2, tRNAGln, O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE
著者Ito, T., Yokoyama, S.
登録日2010-07-19
公開日2010-09-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
Nature, 467, 2010
3AL0
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CRYSTAL STRUCTURE OF THE GLUTAMINE TRANSAMIDOSOME FROM THERMOTOGA MARITIMA IN THE GLUTAMYLATION STATE.
分子名称:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Glutamyl-tRNA(Gln) amidotransferase subunit C,Linker,Glutamate--tRNA ligase 2, ...
著者Ito, T., Yokoyama, S.
登録日2010-07-19
公開日2010-09-29
最終更新日2017-06-28
実験手法X-RAY DIFFRACTION (3.368 Å)
主引用文献Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
Nature, 467, 2010
5BXP
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LNBASE IN COMPLEX WITH LNB-LOGNAC
分子名称:Lacto-N-biosidase, BETA-D-GALACTOSE, LOGNAC, ...
著者Ito, T., Arakawa, T., Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2015-10-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXR
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LNBASE IN COMPLEX WITH LNB-NHACDNJ
分子名称:Lacto-N-biosidase, BETA-D-GALACTOSE, 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, ...
著者Ito, T., Arakawa, T., Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2015-10-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXS
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LNBASE IN COMPLEX WITH LNB-NHACCAS
分子名称:Lacto-N-biosidase, BETA-D-GALACTOSE, 6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE, ...
著者Ito, T., Arakawa, T., Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2015-10-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXT
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LNBASE IN COMPLEX WITH LNB-NHACAUS
分子名称:Lacto-N-biosidase, SULFATE ION, N-{[(1R,2R,3R,7S,7aR)-1,2,7-trihydroxyhexahydro-1H-pyrrolizin-3-yl]methyl}acetamide, ...
著者Ito, T., Arakawa, T., Fushinobu, S.
登録日2015-06-09
公開日2015-09-09
最終更新日2015-10-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
4YVH
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CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN
分子名称:tRNA (guanine-N(1)-)-methyltransferase, SINEFUNGIN
著者Yoshida, K., Ito, T., Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2015-08-19
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVI
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CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN AND TRNA
分子名称:tRNA (guanine-N(1)-)-methyltransferase, tRNA, SINEFUNGIN
著者Yoshida, K., Ito, T., Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2015-09-09
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVJ
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CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN AND TRNA VARIANT (G36U)
分子名称:tRNA (guanine-N(1)-)-methyltransferase, tRNA, SINEFUNGIN
著者Yoshida, K., Ito, T., Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2015-09-09
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVK
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CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN AND TRNA VARIANT (G36C)
分子名称:tRNA (guanine-N(1)-)-methyltransferase, tRNA, SINEFUNGIN
著者Yoshida, K., Ito, T., Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2015-09-09
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
2Z0A
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CRYSTAL STRUCTURE OF RNA-BINDING DOMAIN OF NS1 FROM INFLUENZA A VIRUS A/CROW/KYOTO/T1/2004(H5N1)
分子名称:Nonstructural protein 1, GLYCINE, SUCCINIC ACID
著者Saijo, S., Kishishita, S., Kamo-Uchikubo, T., Terada, T., Shirouzu, M., Ito, H., Ito, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2008-05-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1)
To be Published
2Z16
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CRYSTAL STRUCTURE OF MATRIX PROTEIN 1 FROM INFLUENZA A VIRUS A/CROW/KYOTO/T1/2004(H5N1)
分子名称:Matrix protein 1
著者Saijo, S., Kishishita, S., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Ito, H., Ito, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-08
公開日2008-05-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structure of Matrix protein 1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1)
To be Published
3VRH
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CRYSTAL STRUCTURE OF PH0300
分子名称:Putative uncharacterized protein PH0300, ZINC ION, BICINE
著者Nakagawa, H., Kuratani, M., Goto-Ito, S., Ito, T., Sekine, S.I., Yokoyama, S.
登録日2012-04-10
公開日2013-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA.
Proteins, 2013
2YX0
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CRYSTAL STRUCTURE OF P. HORIKOSHII TYW1
分子名称:radical sam enzyme
著者Goto-Ito, S., Ishii, R., Ito, T., Shibata, R., Fusatomi, E., Sekine, S., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-23
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
Acta Crystallogr.,Sect.D, 63, 2007
2YX1
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CRYSTAL STRUCTURE OF M.JANNASCHII TRNA M1G37 METHYLTRANSFERASE
分子名称:Hypothetical protein MJ0883, ZINC ION, SINEFUNGIN
著者Goto-Ito, S., Ito, T., Ishii, R., Bessho, Y., Yokoyama, S.
登録日2007-04-23
公開日2008-04-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5.
Proteins, 72, 2008
2ZZM
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THE COMPLEX STRUCTURE OF ATRM5 AND TRNALEU
分子名称:Uncharacterized protein MJ0883, RNA (84-MER), S-ADENOSYLMETHIONINE, ...
著者Goto-Ito, S., Ito, T., Yokoyama, S.
登録日2009-02-19
公開日2009-09-15
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation
Nat.Struct.Mol.Biol., 16, 2009