Author results

1UAT
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THE SIGNIFICANCE OF THE FLEXIBLE LOOP IN THE AZURIN (AZ-ISO2) FROM THE OBLIGATE METHYLOTROPH METHYLOMONAS SP. STRAIN J
Descriptor:Azurin iso-2, COPPER (II) ION, SULFATE ION
Authors:Inoue, T., Suzuki, S., Nisho, N., Yamaguchi, K., Kataoka, K., Tobari, J., Yong, X., Hamanaka, S., Matsumura, H., Kai, Y.
Deposit date:2003-03-19
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
J.Mol.Biol., 333, 2003
1BQK
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OXIDIZED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BQR
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REDUCED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BXU
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OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1BXV
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REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1PMY
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REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Kai, Y., Harada, S., Kasai, N., Ohshiro, Y., Suzuki, S., Kohzuma, T., Tobari, J.
Deposit date:1994-01-28
Release date:1994-07-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 50, 1994
1CUO
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CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J
Descriptor:PROTEIN (AZURIN ISO-2), COPPER (II) ION
Authors:Inoue, T., Nishio, N., Kai, Y., Suzuki, S., Kataoka, K.
Deposit date:1999-08-21
Release date:2000-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J.
J.Mol.Biol., 333, 2003
1ZIA
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OXIDIZED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1996-04-09
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.
J.Biochem.(Tokyo), 114, 1993
1ZIB
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REDUCED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1996-04-09
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.
J.Biochem.(Tokyo), 114, 1993
1IYH
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CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Descriptor:HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, MAGNESIUM ION, GLUTATHIONE
Authors:Inoue, T.
Deposit date:2002-08-26
Release date:2003-04-08
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of metal activation of human hematopoietic prostaglandin D synthase
NAT.STRUCT.BIOL., 10, 2003
1IYI
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CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Descriptor:HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, GLUTATHIONE, CALCIUM ION
Authors:Inoue, T.
Deposit date:2002-08-26
Release date:2003-04-08
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of metal activation of human hematopoietic prostaglandin D synthase
NAT.STRUCT.BIOL., 10, 2003
1BQ5
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NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051
Descriptor:NITRITE REDUCTASE, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Deligeer, Suzuki, S., Kataoka, K., Yamaguchi, K., Watanabe, H., Goho, M., Yasushi, K.A.I.
Deposit date:1998-08-21
Release date:1999-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Type 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases.
J.Biochem.(Tokyo), 124, 1998
1V40
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FIRST INHIBITOR COMPLEX STRUCTURE OF HUMAN HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Descriptor:Glutathione-requiring prostaglandin D synthase, MAGNESIUM ION, GLUTATHIONE, ...
Authors:Inoue, T., Okano, Y., Kado, Y., Aritake, K., Irikura, D., Uodome, N., Kinugasa, S., Okazaki, N., Matsumura, H., Kai, Y., Urade, Y.
Deposit date:2003-11-07
Release date:2004-11-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
1VBJ
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THE CRYSTAL STRUCTURE OF PROSTAGLANDIN F SYNTHASE FROM TRYPANOSOMA BRUCEI
Descriptor:prostaglandin F synthase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, CITRIC ACID
Authors:Inoue, T.
Deposit date:2004-02-27
Release date:2005-04-12
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of prostaglandin F synthase from Trypanosoma brucei
TO BE PUBLISHED
1WM1
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CRYSTAL STRUCTURE OF PROLYL AMINOPEPTIDASE, COMPLEX WITH PRO-TBODA
Descriptor:Proline iminopeptidase, (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE
Authors:Nakajima, Y., Inoue, T., Ito, K., Tozaka, T., Hatakeyama, S., Tanaka, N., Nakamura, K.T., Yoshimoto, T.
Deposit date:2004-07-01
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor
ARCH.BIOCHEM.BIOPHYS., 416, 2003
1KDI
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REDUCED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1KDJ
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OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
2ZWS
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CRYSTAL STRUCTURE ANALYSIS OF NEUTRAL CERAMIDASE FROM PSEUDOMONAS AERUGINOSA
Descriptor:Neutral ceramidase, ZINC ION, MAGNESIUM ION, ...
Authors:Kakuta, Y., Okino, N., Inoue, T., Okano, H., Ito, M.
Deposit date:2008-12-17
Release date:2009-03-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
2ZXC
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CERAMIDASE COMPLEXED WITH C2
Descriptor:Neutral ceramidase, ZINC ION, N-[(1R,2R,3E)-2-hydroxy-1-(hydroxymethyl)heptadec-3-en-1-yl]acetamide, ...
Authors:Okano, H., Inoue, T., Okino, N., Kakuta, Y., Matsumura, H., Ito, M.
Deposit date:2008-12-22
Release date:2009-02-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
5D4H
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HIGH-RESOLUTION NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SYNCHROTRON RADIATION CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
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INTACT NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
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CHLORIDE-BOUND FORM OF A COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
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NITRITE COMPLEX STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
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RESTING STATE STRUCTURE OF CUNIR FORM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSC
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COMPLETELY OXIDIZED STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016