Author results

1A2B
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HUMAN RHOA COMPLEXED WITH GTP ANALOGUE
Descriptor:TRANSFORMING PROTEIN RHOA, MAGNESIUM ION, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
Authors:Ihara, K., Muraguchi, S., Kato, M., Shimizu, T., Shirakawa, M., Kuroda, S., Kaibuchi, K., Hakoshima, T.
Deposit date:1997-12-26
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue.
J.Biol.Chem., 273, 1998
3T5W
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2ME MODIFIED HUMAN SOD1
Descriptor:Superoxide dismutase [Cu-Zn], COPPER (I) ION, ZINC ION, ...
Authors:Ihara, K., Yamaguchi, Y., Torigoe, H., Wakatsuki, S., Taniguchi, N., Suzuki, K., Fujiwara, N.
Deposit date:2011-07-28
Release date:2012-08-01
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural switching of Cu,Zn-superoxide dismutases at loop VI: insights from the crystal structure of 2-mercaptoethanol-modified enzyme
Biosci.Rep., 32, 2012
2EFE
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ARA7-GDPNH2/ATVPS9A
Descriptor:Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like, AMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Ihara, K., Uejima, T., Wakatsuki, S.
Deposit date:2007-02-22
Release date:2008-02-26
Last modified:2011-12-21
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2EFH
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ARA7-GDP/ATVPS9A(D185N)
Descriptor:Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like, GUANOSINE-5'-DIPHOSPHATE
Authors:Ihara, K., Uejima, T., Wakatsuki, S.
Deposit date:2007-02-22
Release date:2008-02-26
Last modified:2011-12-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
4G01
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ARA7-GDP-CA2+/VPS9A
Descriptor:Vacuolar protein sorting-associated protein 9A, Ras-related protein RABF2b, CALCIUM ION, ...
Authors:Ihara, K.
Deposit date:2012-07-09
Release date:2013-02-27
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Direct metal recognition by guanine nucleotide-exchange factor in the initial step of the exchange reaction
Acta Crystallogr.,Sect.D, 69, 2013
1CXZ
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CRYSTAL STRUCTURE OF HUMAN RHOA COMPLEXED WITH THE EFFECTOR DOMAIN OF THE PROTEIN KINASE PKN/PRK1
Descriptor:PROTEIN (HIS-TAGGED TRANSFORMING PROTEIN RHOA(0-181)), PROTEIN (PKN), MAGNESIUM ION, ...
Authors:Maesaki, R., Ihara, K., Shimizu, T., Kuroda, S., Kaibuchi, K., Hakoshima, T.
Deposit date:1999-08-31
Release date:1999-10-08
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structural basis of Rho effector recognition revealed by the crystal structure of human RhoA complexed with the effector domain of PKN/PRK1.
Mol.Cell, 4, 1999
1DPF
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CRYSTAL STRUCTURE OF A MG-FREE FORM OF RHOA COMPLEXED WITH GDP
Descriptor:RHOA, GUANOSINE-5'-DIPHOSPHATE
Authors:Shimizu, T., Ihara, K., Maesaki, R., Kuroda, S., Kaibuchi, K., Hakoshima, T.
Deposit date:1999-12-27
Release date:2000-06-21
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:An open conformation of switch I revealed by the crystal structure of a Mg2+-free form of RHOA complexed with GDP. Implications for the GDP/GTP exchange mechanism.
J.Biol.Chem., 275, 2000
1UIX
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COILED-COIL STRUCTURE OF THE RHOA-BINDING DOMAIN IN RHO-KINASE
Descriptor:Rho-associated kinase
Authors:Shimizu, T., Ihara, K., Maesaki, R., Amano, M., Kaibuchi, K., Hakoshima, T.
Deposit date:2003-07-23
Release date:2003-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase
J.Biol.Chem., 278, 2003
1UJB
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STRUCTURE OF THE PROTEIN HISTIDINE PHOSPHATASE SIXA
Descriptor:Phosphohistidine phosphatase sixA, CALCIUM ION
Authors:Hamada, K., Kato, M., Shimizu, T., Ihara, K., Mizuno, T., Hakoshima, T.
Deposit date:2003-07-31
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Crystal structure of the protein histidine phosphatase SixA in the multistep His-Asp phosphorelay.
Genes Cells, 10, 2005
1UJC
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STRUCTURE OF THE PROTEIN HISTIDINE PHOSPHATASE SIXA COMPLEXED WITH TUNGSTATE
Descriptor:Phosphohistidine phosphatase sixA, CALCIUM ION, TUNGSTATE(VI)ION
Authors:Hamada, K., Kato, M., Shimizu, T., Ihara, K., Mizuno, T., Hakoshima, T.
Deposit date:2003-07-31
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the protein histidine phosphatase SixA in the multistep His-Asp phosphorelay.
Genes Cells, 10, 2005
1VGO
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CRYSTAL STRUCTURE OF ARCHAERHODOPSIN-2
Descriptor:Archaerhodopsin 2, B-NONYLGLUCOSIDE, SULFATE ION, ...
Authors:Yoshimura, K., Enami, N., Murakami, M., Okumura, H., Ihara, K., Kouyama, T.
Deposit date:2004-04-28
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps
J.Mol.Biol., 358, 2006
2DWX
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CO-CRYSTAL STRUCTURE ANALYSIS OF GGA1-GAE WITH THE WNSF MOTIF
Descriptor:ADP-ribosylation factor-binding protein GGA1, hinge peptide from ADP-ribosylation factor binding protein GGA1
Authors:Inoue, M., Shiba, T., Yamada, Y., Ihara, K., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2006-08-21
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
2DWY
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CRYSTAL STRUCTURE ANALYSIS OF GGA1-GAE
Descriptor:ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1
Authors:Inoue, M., Shiba, T., Yamada, Y., Ihara, K., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2006-08-21
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
1A0A
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PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
Descriptor:DNA (5'-D(*CP*TP*CP*AP*CP*AP*CP*GP*TP*GP*GP*GP*AP*CP*TP*AP*G )-3'), DNA (5'-D(*CP*TP*AP*GP*TP*CP*CP*CP*AP*CP*GP*TP*GP*TP*GP*AP*G )-3'), PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)
Authors:Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.
Deposit date:1997-11-27
Release date:1998-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.
EMBO J., 16, 1997
1Z6I
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CRYSTAL STRUCTURE OF THE ECTODOMAIN OF DROSOPHILA TRANSMEMBRANE RECEPTOR PGRP-LCA
Descriptor:Peptidoglycan-recognition protein-LC, N-ACETYL-D-GLUCOSAMINE, SULFATE ION
Authors:Chang, C.-I., Ihara, K., Chelliah, Y., Mengin-Lecreulx, D., Wakatsuki, S., Deisenhofer, J.
Deposit date:2005-03-22
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
Proc.Natl.Acad.Sci.Usa, 102, 2005
2DHT
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CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM SULFOLOBUS TOKODAII STRAIN7
Descriptor:409aa long hypothetical NADP-dependent isocitrate dehydrogenase
Authors:Kondo, H., Murakami, M., Ihara, K., Suzuki, S., Kouyama, T.
Deposit date:2006-03-25
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of isocitrate dehydrogenase of Sulfolobus tokodaii strain7
To be Published
2EFC
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ARA7-GDP/ATVPS9A
Descriptor:Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like, GUANOSINE-5'-DIPHOSPHATE
Authors:Uejima, T., Ihara, K., Goh, T., Ito, E., Sunada, M., Ueda, T., Nakano, A., Wakatsuki, S.
Deposit date:2007-02-22
Release date:2008-02-26
Last modified:2011-12-21
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2EFD
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ARA7/ATVPS9A
Descriptor:Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like
Authors:Uejima, T., Ihara, K., Wakatsuki, S.
Deposit date:2007-02-22
Release date:2008-02-26
Last modified:2011-12-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2IEY
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN HEXAGONAL SPACE GROUP
Descriptor:Ras-related protein Rab-27B, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2IEZ
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN MONOCLINIC SPACE GROUP
Descriptor:Ras-related protein Rab-27B, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2IF0
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN MONOCLINIC SPACE GROUP
Descriptor:Ras-related protein Rab-27B, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2Z44
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CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z45
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CRYSTAL STRUCTURE OF ZN-BOUND ORF134
Descriptor:ORF134, ZINC ION
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z46
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CRYSTAL STRUCTURE OF NATIVE-ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Crystal Structure of ORF134
To be Published
3BC1
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CRYSTAL STRUCTURE OF THE COMPLEX RAB27A-SLP2A
Descriptor:Ras-related protein Rab-27A, Synaptotagmin-like protein 2, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Chavas, L.M.G., Ihara, K., Kawasaki, M., Wakatsuki, S.
Deposit date:2007-11-12
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
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