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2IE1
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BU of 2ie1 by Molmil
Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE
Authors:Ohishi, H, Odoko, M, Tsukamoto, K, Hiyama, Y, Maezaki, N, Grzeskowiak, K, Ishida, T, Tanaka, T, Okabe, N, Fukuyama, K.
Deposit date:2006-09-16
Release date:2007-10-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography
To be Published
1J2E
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BU of 1j2e by Molmil
Crystal structure of Human Dipeptidyl peptidase IV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase IV
Authors:Hiramatsu, H, Kyono, K, Higashiyama, Y, Fukushima, C, Shima, H, Sugiyama, S, Inaka, K, Yamamoto, A, Shimizu, R.
Deposit date:2002-12-30
Release date:2003-12-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure and function of human dipeptidyl peptidase IV, possessing a unique eight-bladed beta-propeller fold.
Biochem.Biophys.Res.Commun., 302, 2003
5XNY
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BU of 5xny by Molmil
Crystal structure of CreD
Descriptor: CreD
Authors:Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
Deposit date:2017-05-25
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
5XNZ
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BU of 5xnz by Molmil
Crystal structure of CreD complex with fumarate
Descriptor: CreD, FUMARIC ACID
Authors:Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
Deposit date:2017-05-25
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
1UJJ
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BU of 1ujj by Molmil
VHS domain of human GGA1 complexed with C-terminal peptide from BACE
Descriptor: ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase
Authors:Shiba, T, Kametaka, S, Kawasaki, M, Shibata, M, Waguri, S, Uchiyama, Y, Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1UJK
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BU of 1ujk by Molmil
VHS domain of human GGA1 complexed with C-terminal phosphopeptide from BACE
Descriptor: ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase, IODIDE ION
Authors:Shiba, T, Kametaka, S, Kawasaki, M, Shibata, M, Waguri, S, Uchiyama, Y, Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1WCY
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BU of 1wcy by Molmil
Crystal Structure Of Human Dipeptidyl Peptidase IV (DPPIV) Complex With Diprotin A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase IV, ...
Authors:Hiramatsu, H, Yamamoto, A, Kyono, K, Higashiyama, Y, Fukushima, C, Shima, H, Sugiyama, S, Inaka, K, Shimizu, R.
Deposit date:2004-05-07
Release date:2005-05-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of human dipeptidyl peptidase IV (DPPIV) complex with diprotin A
Biol.Chem., 385, 2004
5B40
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BU of 5b40 by Molmil
The nucleosome structure containing H2B-K120 and H4-K31 monoubiquitinations
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Machida, S, Sekine, S, Nishiyama, Y, Horikoshi, N, Kurumizaka, H.
Deposit date:2016-03-22
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Monoubiquitination of histones H2B and H4 changes the nucleosome stability without affecting the nucleosome structure
To Be Published
3WN6
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BU of 3wn6 by Molmil
Crystal structure of alpha-amylase AmyI-1 from Oryza sativa
Descriptor: Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ...
Authors:Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T.
Deposit date:2013-12-05
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
3CLF
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BU of 3clf by Molmil
HIV neutralizing monoclonal antibody YZ23
Descriptor: Fab heavy chain, Fab light chain
Authors:Symersky, J, Boivin, S, Paul, S.
Deposit date:2008-03-18
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:HIV neutralizing monoclonal antibody YZ23
To be Published
7UOC
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BU of 7uoc by Molmil
Crystal structure of Orobanche minor KAI2d4
Descriptor: CHLORIDE ION, KAI2d4
Authors:Burger, M, Chory, J.
Deposit date:2022-04-12
Release date:2023-04-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Divergent Clade KAI2 Protein in the Root Parasitic Plant Orobanche minor Is a Highly Sensitive Strigolactone Receptor and Is Involved in the Perception of Sesquiterpene Lactones.
Plant Cell.Physiol., 64, 2023
2LWI
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BU of 2lwi by Molmil
Solution structure of H-RasT35S mutant protein in complex with Kobe2601
Descriptor: 2-(2,4-dinitrophenyl)-N-(4-fluorophenyl)hydrazinecarbothioamide, GTPase HRas, MAGNESIUM ION, ...
Authors:Araki, M, Tamura, A, Shima, F, Kataoka, T.
Deposit date:2012-08-01
Release date:2013-05-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction.
Proc.Natl.Acad.Sci.USA, 110, 2013
1WE0
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BU of 1we0 by Molmil
Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus
Descriptor: AMMONIUM ION, alkyl hydroperoxide reductase C
Authors:Kitano, K, Kita, A, Hakoshima, T, Niimura, Y, Miki, K.
Deposit date:2004-05-21
Release date:2005-03-29
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus
Proteins, 59, 2005
3AJ4
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BU of 3aj4 by Molmil
Crystal structure of the PH domain of Evectin-2 from human complexed with O-phospho-L-serine
Descriptor: 1,2-ETHANEDIOL, PHOSPHOSERINE, Pleckstrin homology domain-containing family B member 2
Authors:Okazaki, S, Kato, R, Wakatsuki, S.
Deposit date:2010-05-21
Release date:2011-05-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1 Å)
Cite:Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes
Proc.Natl.Acad.Sci.USA, 108, 2011

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