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4Y9H
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THE 1.43 ANGSTROM CRYSTAL STRUCTURE OF BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES
Descriptor:Bacteriorhodopsin, RETINAL, PHOSPHATE ION, ...
Authors:Saiki, H., Sugiyama, S., Kakinouchi, K., Kawatake, S., Hanashima, S., Matsumori, N., Murata, M.
Deposit date:2015-02-17
Release date:2016-02-17
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles
To Be Published
3AIH
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HUMAN OS-9 MRH DOMAIN COMPLEXED WITH ALPHA3,ALPHA6-MAN5
Descriptor:Protein OS-9, BETA-D-MANNOSE, ALPHA-D-MANNOSE
Authors:Satoh, T., Chen, Y., Hu, D., Hanashima, S., Yamamoto, K., Yamaguchi, Y.
Deposit date:2010-05-14
Release date:2010-12-22
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Oligosaccharide Recognition of Misfolded Glycoproteins by OS-9 in ER-Associated Degradation
Mol.Cell, 40, 2010
3VYJ
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CRYSTAL STRUCTURE OF C-TYPE LECTIN DOMAIN OF MURINE DENDRITIC CELL INHIBITORY RECEPTOR 2 (APO FORM)
Descriptor:C-type lectin domain family 4, member a4, SULFATE ION
Authors:Nagae, M., Yamanaka, K., Hanashima, S., Ikeda, A., Satoh, T., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
Deposit date:2012-09-26
Release date:2013-10-02
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2
J.Biol.Chem., 288, 2013
3VYK
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CRYSTAL STRUCTURE OF C-TYPE LECTIN DOMAIN OF MURINE DENDRITIC CELL INHIBITORY RECEPTOR 2 IN COMPLEX WITH N-GLYCAN
Descriptor:C-type lectin domain family 4, member a4, O1-METHYL-MANNOSE, ...
Authors:Nagae, M., Yamanaka, K., Hanashima, S., Ikeda, A., Satoh, T., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
Deposit date:2012-09-26
Release date:2013-10-02
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2
J.Biol.Chem., 288, 2013
3WBD
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CRYSTAL STRUCTURE OF ANTI-POLYSIALIC ACID ANTIBODY SINGLE CHAIN FV FRAGMENT (MAB735) COMPLEXED WITH OCTASIALIC ACID
Descriptor:single chain Fv fragment of mAb735, CITRATE ANION, O-SIALIC ACID
Authors:Nagae, M., Ikeda, A., Hanashima, S., Kitajima, K., Sato, C., Yamaguchi, Y.
Deposit date:2013-05-14
Release date:2013-10-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of anti-polysialic acid antibody single chain Fv fragment complexed with octasialic acid: insight into the binding preference for polysialic acid.
J.Biol.Chem., 288, 2013
5B34
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SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES IN COMPLEX WITH IODINE-LABELED DETERGENT HAD13A DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA
Descriptor:Bacteriorhodopsin, RETINAL, 2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid, ...
Authors:Mizohata, E., Nakane, T.
Deposit date:2016-02-10
Release date:2016-11-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
5B35
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SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA
Descriptor:Bacteriorhodopsin, RETINAL, (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, ...
Authors:Mizohata, E., Nakane, T., Suzuki, M.
Deposit date:2016-02-10
Release date:2016-11-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
3VY6
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CRYSTAL STRUCTURE OF HUMAN PANCREATIC SECRETORY PROTEIN ZG16P WITH LAMINARIBIOSE
Descriptor:Zymogen granule membrane protein 16, BETA-D-GLUCOSE, CHLORIDE ION
Authors:Kanagawa, M., Yamaguchi, Y.
Deposit date:2012-09-21
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
J.Biol.Chem., 289, 2014
3VY7
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CRYSTAL STRUCTURE OF HUMAN PANCREATIC SECRETORY PROTEIN ZG16P WITH O-(ALPHA-D-MANNOSYL)-L-SERINE
Descriptor:Zymogen granule membrane protein 16, SERINE, ALPHA-D-MANNOSE, ...
Authors:Kanagawa, M., Yamaguchi, Y.
Deposit date:2012-09-21
Release date:2013-09-25
Last modified:2014-09-03
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
J.Biol.Chem., 289, 2014
3VZE
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CRYSTAL STRUCTURE OF HUMAN PANCREATIC SECRETORY PROTEIN ZG16P WITH ALPHA1,3-MANNOBIOSE
Descriptor:Zymogen granule membrane protein 16, ALPHA-D-MANNOSE, CHLORIDE ION
Authors:Kanagawa, M., Yamaguchi, Y.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2014-09-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
J.Biol.Chem., 289, 2014
3VZF
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CRYSTAL STRUCTURE OF HUMAN PANCREATIC SECRETORY PROTEIN ZG16P WITH METHYL ALPHA-D-MANNOPYRANOSIDE
Descriptor:Zymogen granule membrane protein 16, O1-METHYL-MANNOSE, CHLORIDE ION
Authors:Kanagawa, M., Yamaguchi, Y.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2014-09-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
J.Biol.Chem., 289, 2014
3VZG
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CRYSTAL STRUCTURE OF HUMAN PANCREATIC SECRETORY PROTEIN ZG16P WITH O-(ALPHA-D-MANNOSYL)-L-THREONINE
Descriptor:Zymogen granule membrane protein 16, THREONINE, ALPHA-D-MANNOSE, ...
Authors:Kanagawa, M., Yamaguchi, Y.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2014-09-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
J.Biol.Chem., 289, 2014
3WCR
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CRYSTAL STRUCTURE OF PLANT LECTIN (LIGAND-FREE FORM)
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, BROMIDE ION
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WCS
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CRYSTAL STRUCTURE OF PLANT LECTIN (LIGAND-BOUND FORM)
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, MANGANESE (II) ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WOG
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CRYSTAL STRUCTURE PLANT LECTIN IN COMPLEX WITH LIGAND
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, MANGANESE (II) ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-12-26
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
5AV7
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CRYSTAL STRUCTURE OF CALSEPA LECTIN IN COMPLEX WITH BISECTED GLYCAN
Descriptor:Lectin, O1-METHYL-MANNOSE, ALPHA-D-MANNOSE, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AVA
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CRYSTAL STRUCTURE OF PHA-E LECTIN IN COMPLEX WITH BISECTED GLYCAN
Descriptor:Erythroagglutinin, MANGANESE (II) ION, CALCIUM ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5B1W
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CRYSTAL STRUCTURE OF HUMAN DENDRITIC CELL INHIBITORY RECEPTOR (DCIR) C-TYPE LECTIN DOMAIN IN LIGAND-FREE FORM
Descriptor:C-type lectin domain family 4 member A, CALCIUM ION
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-12-21
Release date:2016-05-11
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett., 590, 2016
5B1X
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CRYSTAL STRUCTURE OF HUMAN DENDRITIC CELL INHIBITORY RECEPTOR (DCIR) C-TYPE LECTIN DOMAIN IN COMPLEX WITH BIANTENNARY GLYCAN
Descriptor:C-type lectin domain family 4 member A, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-12-21
Release date:2016-05-11
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett., 590, 2016
5XFH
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CRYSTAL STRUCTURE OF ORYSATA LECTIN IN COMPLEX WITH BIANTENNARY N-GLYCAN
Descriptor:Salt stress-induced protein, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2017-04-10
Release date:2017-10-18
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
5XFI
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CRYSTAL STRUCTURE OF CALSEPA LECTIN IN COMPLEX WITH BIANTENNARY N-GLYCAN
Descriptor:Lectin, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2017-04-10
Release date:2017-10-18
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.653 Å)
Cite:Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
5ZIB
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CRYSTAL STRUCTURE OF HUMAN GNT-V LUMINAL DOMAIN IN APO FORM
Descriptor:Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A, N-ACETYL-D-GLUCOSAMINE
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2018-03-14
Release date:2018-08-01
Last modified:2018-09-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.
Nat Commun, 9, 2018
5ZIC
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CRYSTAL STRUCTURE OF HUMAN GNT-V LUMINAL DOMAIN IN COMPLEX WITH ACCEPTOR SUGAR
Descriptor:Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A, BETA-D-MANNOSE, 6-thio-alpha-D-mannopyranose, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2018-03-14
Release date:2018-08-01
Last modified:2018-09-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.
Nat Commun, 9, 2018