Author results

1SOR
  • Download 1sor
  • View 1sor
Molmil generated image of 1sor
AQUAPORIN-0 MEMBRANE JUNCTIONS REVEAL THE STRUCTURE OF A CLOSED WATER PORE
Descriptor:Aquaporin-0
Authors:Gonen, T., Sliz, P., Kistler, J., Cheng, Y., Walz, T.
Deposit date:2004-03-15
Release date:2004-05-11
Last modified:2018-01-31
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Aquaporin-0 membrane junctions reveal the structure of a closed water pore
Nature, 429, 2004
2B6O
  • Download 2b6o
  • View 2b6o
Molmil generated image of 2b6o
ELECTRON CRYSTALLOGRAPHIC STRUCTURE OF LENS AQUAPORIN-0 (AQP0) (LENS MIP) AT 1.9A RESOLUTION, IN A CLOSED PORE STATE
Descriptor:1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Lens fiber major intrinsic protein
Authors:Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (1.9 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
2B6P
  • Download 2b6p
  • View 2b6p
Molmil generated image of 2b6p
X-RAY STRUCTURE OF LENS AQUAPORIN-0 (AQP0) (LENS MIP) IN AN OPEN PORE STATE
Descriptor:Lens fiber major intrinsic protein
Authors:Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
6C9I
  • Download 6c9i
  • View 6c9i
Molmil generated image of 6c9i
SINGLE-PARTICLE RECONSTRUCTION OF DARP14 - A DESIGNED PROTEIN SCAFFOLD DISPLAYING ~17KDA DARPIN PROTEINS - SCAFFOLD
Descriptor:DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Gonen, S., Liu, Y., Yeates, T.O., Gonen, T.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2018-04-11
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6C9K
  • Download 6c9k
  • View 6c9k
Molmil generated image of 6c9k
SINGLE-PARTICLE RECONSTRUCTION OF DARP14 - A DESIGNED PROTEIN SCAFFOLD DISPLAYING ~17KDA DARPIN PROTEINS
Descriptor:DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Gonen, S., Liu, Y., Yeates, T.O., Gonen, T.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2018-04-11
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3J07
  • Download 3j07
  • View 3j07
Molmil generated image of 3j07
MODEL OF A 24MER ALPHAB-CRYSTALLIN MULTIMER
Descriptor:Alpha-crystallin B chain
Authors:Jehle, S., Vollmar, B., Bardiaux, B., Dove, K.K., Rajagopal, P., Gonen, T., Oschkinat, H., Klevit, R.E.
Deposit date:2011-04-27
Release date:2016-01-20
Last modified:2016-11-23
Method:ELECTRON MICROSCOPY (20 Å), SOLID-STATE NMR, SOLUTION SCATTERING
Cite:N-terminal domain of {alpha}B-crystallin provides a conformational switch for multimerization and structural heterogeneity.
Proc.Natl.Acad.Sci.USA, 108, 2011
3J41
  • Download 3j41
  • View 3j41
Molmil generated image of 3j41
PSEUDO-ATOMIC MODEL OF THE AQUAPORIN-0/CALMODULIN COMPLEX DERIVED FROM ELECTRON MICROSCOPY
Descriptor:CALCIUM ION, Calmodulin, Lens fiber major intrinsic protein
Authors:Reichow, S.L., Clemens, D.M., Freites, J.A., Nemeth-Cahalan, K.L., Heyden, M., Tobias, D.J., Hall, J.E., Gonen, T.
Deposit date:2013-05-31
Release date:2013-07-31
Last modified:2013-09-18
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Allosteric mechanism of water-channel gating by Ca(2+)-calmodulin.
Nat.Struct.Mol.Biol., 20, 2013
3J4G
  • Download 3j4g
  • View 3j4g
Molmil generated image of 3j4g
STRUCTURE OF LYSOZYME SOLVED BY MICROED TO 2.9 A
Descriptor:Lysozyme C
Authors:Shi, D., Nannenga, B.L., Iadanza, M.G., Gonen, T.
Deposit date:2013-08-12
Release date:2013-11-13
Last modified:2015-04-15
Method:ELECTRON CRYSTALLOGRAPHY (2.901 Å)
Cite:Three-dimensional electron crystallography of protein microcrystals.
Elife, 2, 2013
3J4Q
  • Download 3j4q
  • View 3j4q
Molmil generated image of 3j4q
PSEUDO-ATOMIC MODEL OF THE AKAP18-PKA COMPLEX IN A BENT CONFORMATION DERIVED FROM ELECTRON MICROSCOPY
Descriptor:A-kinase anchor protein 18, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-alpha regulatory subunit
Authors:Reichow, S.L., Gonen, T.
Deposit date:2013-09-25
Release date:2013-11-13
Last modified:2013-11-27
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Intrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation.
Elife, 2, 2013
3J4R
  • Download 3j4r
  • View 3j4r
Molmil generated image of 3j4r
PSEUDO-ATOMIC MODEL OF THE AKAP18-PKA COMPLEX IN A LINEAR CONFORMATION DERIVED FROM ELECTRON MICROSCOPY
Descriptor:A-kinase anchor protein 18, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-alpha regulatory subunit
Authors:Reichow, S.L., Gonen, T.
Deposit date:2013-09-25
Release date:2013-11-13
Last modified:2013-11-27
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Intrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation.
Elife, 2, 2013
3J6K
  • Download 3j6k
  • View 3j6k
Molmil generated image of 3j6k
2.5A STRUCTURE OF LYSOZYME SOLVED BY MICROED
Descriptor:Lysozyme C
Authors:Nannenga, B.L., Shi, D., Leslie, A.G.W., Gonen, T.
Deposit date:2014-03-18
Release date:2014-08-13
Last modified:2015-04-08
Method:ELECTRON CRYSTALLOGRAPHY (2.496 Å)
Cite:High-resolution structure determination by continuous-rotation data collection in MicroED.
Nat.Methods, 11, 2014
3J7B
  • Download 3j7b
  • View 3j7b
Molmil generated image of 3j7b
CATALASE SOLVED AT 3.2 ANGSTROM RESOLUTION BY MICROED
Descriptor:Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nannenga, B.L., Shi, D., Hattne, J., Reyes, F.E., Gonen, T.
Deposit date:2014-06-09
Release date:2014-10-08
Last modified:2015-04-08
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Catalase solved at 3.2 Angstrom resolution by MicroED
eLife, 2014
4JR9
  • Download 4jr9
  • View 4jr9
Molmil generated image of 4jr9
CRYSTAL STRUCTURE OF NITRATE/NITRITE EXCHANGER NARK
Descriptor:Immunoglobulin Gamma-2a, Heavy chain, Immunoglobulin Kappa, ...
Authors:Zheng, H., Wisedchaisri, G., Gonen, T.
Deposit date:2013-03-21
Release date:2013-05-15
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a nitrate/nitrite exchanger.
Nature, 497, 2013
4JRE
  • Download 4jre
  • View 4jre
Molmil generated image of 4jre
CRYSTAL STRUCTURE OF NITRATE/NITRITE EXCHANGER NARK WITH NITRITE BOUND
Descriptor:Immunoglobulin Gamma-2a, Heavy chain, Immunoglobulin Kappa, ...
Authors:Zheng, H., Wisedchaisri, G., Gonen, T.
Deposit date:2013-03-21
Release date:2013-05-15
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a nitrate/nitrite exchanger.
Nature, 497, 2013
4QIQ
  • Download 4qiq
  • View 4qiq
Molmil generated image of 4qiq
CRYSTAL STRUCTURE OF D-XYLOSE-PROTON SYMPORTER
Descriptor:D-xylose-proton symporter, ZINC ION
Authors:Wisedchaisri, G., Park, M., Iadanza, M.G., Zheng, H., Gonen, T.
Deposit date:2014-06-01
Release date:2014-08-06
Last modified:2014-08-27
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Proton-coupled sugar transport in the prototypical major facilitator superfamily protein XylE.
Nat Commun, 5, 2014
4RIL
  • Download 4ril
  • View 4ril
Molmil generated image of 4ril
STRUCTURE OF THE AMYLOID FORMING SEGMENT, GAVVTGVTAVA, FROM THE NAC DOMAIN OF PARKINSON'S DISEASE PROTEIN ALPHA-SYNUCLEIN, RESIDUES 68-78, DETERMINED BY ELECTRON DIFFRACTION
Descriptor:Alpha-synuclein
Authors:Rodriguez, J.A., Ivanova, M., Sawaya, M.R., Cascio, D., Reyes, F., Shi, D., Johnson, L., Guenther, E., Sangwan, S., Hattne, J., Nannenga, B., Brewster, A.S., Messerschmidt, M., Boutet, S., Sauter, N.K., Gonen, T., Eisenberg, D.S.
Deposit date:2014-10-06
Release date:2015-08-26
Last modified:2018-04-25
Method:ELECTRON CRYSTALLOGRAPHY (1.43 Å)
Cite:Structure of the toxic core of alpha-synuclein from invisible crystals.
Nature, 525, 2015
4TQL
  • Download 4tql
  • View 4tql
Molmil generated image of 4tql
COMPUTATIONALLY DESIGNED THREE HELIX BUNDLE
Descriptor:Three helix bundle
Authors:Nannenga, B.L., Oberdorfer, G., DiMaio, F., Baker, D., Gonen, T.
Deposit date:2014-06-11
Release date:2014-10-15
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High thermodynamic stability of parametrically designed helical bundles.
Science, 346, 2014
4UOS
  • Download 4uos
  • View 4uos
Molmil generated image of 4uos
THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES
Descriptor:DESIGNED HELICAL BUNDLE
Authors:Oberdorfer, G., Huang, P., Pei, X.Y., Xu, C., Gonen, T., Nannenga, B., DiMaio, D., Rogers, J., Luisi, B.F., Baker, D.
Deposit date:2014-06-09
Release date:2014-11-05
Last modified:2016-12-14
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:High Thermodynamic Stability of Parametrically Designed Helical Bundles
Science, 346, 2014
4UOT
  • Download 4uot
  • View 4uot
Molmil generated image of 4uot
THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES
Descriptor:DESIGNED HELICAL BUNDLE 5H2L
Authors:Oberdorfer, G., Huang, P., Pei, X.Y., Xu, C., Gonen, T., Nannenga, B., DiMaio, D., Rogers, J., Luisi, B.F., Baker, D.
Deposit date:2014-06-09
Release date:2014-11-05
Last modified:2014-11-19
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:High Thermodynamic Stability of Parametrically Designed Helical Bundles
Science, 346, 2014
4ZNN
  • Download 4znn
  • View 4znn
Molmil generated image of 4znn
MICROED STRUCTURE OF THE SEGMENT, GVVHGVTTVA, FROM THE A53T FAMILIAL MUTANT OF PARKINSON'S DISEASE PROTEIN, ALPHA-SYNUCLEIN RESIDUES 47-56
Descriptor:Alpha-synuclein
Authors:Rodriguez, J.A., Ivanova, M., Sawaya, M.R., Cascio, D., Reyes, F., Shi, D., Johnson, L., Guenther, E., Sangwan, S., Hattne, J., Nannenga, B., Brewster, A.S., Messerschmidt, M., Boutet, S., Sauter, N.K., Gonen, T., Eisenberg, D.S.
Deposit date:2015-05-05
Release date:2015-09-09
Last modified:2017-09-06
Method:ELECTRON CRYSTALLOGRAPHY (1.41 Å)
Cite:Structure of the toxic core of alpha-synuclein from invisible crystals.
Nature, 525, 2015
5A3E
  • Download 5a3e
  • View 5a3e
Molmil generated image of 5a3e
2.5A STRUCTURE OF LYSOZYME DETERMINED BY MICROED WITH DATA FROM A SINGLE CRYSTAL
Descriptor:LYSOZYME C
Authors:Nannenga, B.L., Shi, D., Leslie, A.G.W., Gonen, T.
Deposit date:2015-05-28
Release date:2015-06-17
Last modified:2017-04-19
Method:ELECTRON CRYSTALLOGRAPHY (2.501 Å)
Cite:High-Resolution Structure Determination by Continuous-Rotation Data Collection in Microed.
Nat.Methods, 11, 2014
5I9S
  • Download 5i9s
  • View 5i9s
Molmil generated image of 5i9s
MICROED STRUCTURE OF PROTEINASE K AT 1.75 A RESOLUTION
Descriptor:Proteinase K, SULFATE ION
Authors:Hattne, J., Shi, D., de la Cruz, M.J., Reyes, F.E., Gonen, T.
Deposit date:2016-02-20
Release date:2016-06-08
Last modified:2016-11-30
Method:ELECTRON CRYSTALLOGRAPHY (1.75 Å)
Cite:Modeling truncated pixel values of faint reflections in MicroED images.
J.Appl.Crystallogr., 49, 2016
5K7N
  • Download 5k7n
  • View 5k7n
Molmil generated image of 5k7n
MICROED STRUCTURE OF TAU VQIVYK PEPTIDE AT 1.1 A RESOLUTION
Descriptor:VQIVYK
Authors:de la Cruz, M.J., Hattne, J., Shi, D., Seidler, P., Rodriguez, J., Reyes, F.E., Sawaya, M.R., Cascio, D., Eisenberg, D., Gonen, T.
Deposit date:2016-05-26
Release date:2017-04-05
Last modified:2017-09-13
Method:ELECTRON CRYSTALLOGRAPHY (1.1 Å)
Cite:Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
5K7O
  • Download 5k7o
  • View 5k7o
Molmil generated image of 5k7o
MICROED STRUCTURE OF LYSOZYME AT 1.8 A RESOLUTION
Descriptor:CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:de la Cruz, M.J., Hattne, J., Shi, D., Seidler, P., Rodriguez, J., Reyes, F.E., Sawaya, M.R., Cascio, D., Eisenberg, D., Gonen, T.
Deposit date:2016-05-26
Release date:2017-04-05
Last modified:2017-04-12
Method:ELECTRON CRYSTALLOGRAPHY (1.8 Å)
Cite:Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
5K7P
  • Download 5k7p
  • View 5k7p
Molmil generated image of 5k7p
MICROED STRUCTURE OF XYLANASE AT 2.3 A RESOLUTION
Descriptor:Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:de la Cruz, M.J., Hattne, J., Shi, D., Seidler, P., Rodriguez, J., Reyes, F.E., Sawaya, M.R., Cascio, D., Eisenberg, D., Gonen, T.
Deposit date:2016-05-26
Release date:2017-04-05
Last modified:2017-04-12
Method:ELECTRON CRYSTALLOGRAPHY (2.3 Å)
Cite:Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.
Nat. Methods, 14, 2017
PDBj@FacebookPDBj@TwitterwwPDBwwPDB FoundationEM DataBank

Copyright © 2013-2018 Protein Data Bank Japan