Author results

5NO2
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S4, 30S ribosomal protein S5, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-24
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
5NO3
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE WITHOUT US3)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S4, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-31
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
5NO4
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE WITH US3)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S3, 30S ribosomal protein S4, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-31
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
6H67
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YEAST RNA POLYMERASE I ELONGATION COMPLEX STALLED BY CYCLOBUTANE PYRIMIDINE DIMER (CPD)
Descriptor:DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, ...
Authors:Sanz-Murillo, M., Xu, J., Gil-Carton, D., Wang, D., Fernandez-Tornero, C.
Deposit date:2018-07-26
Release date:2018-08-29
Last modified:2018-09-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of RNA polymerase I stalling at UV light-induced DNA damage.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6H68
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YEAST RNA POLYMERASE I ELONGATION COMPLEX STALLED BY CYCLOBUTANE PYRIMIDINE DIMER (CPD) WITH FULLY-ORDERED A49
Descriptor:DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, ...
Authors:Sanz-Murillo, M., Xu, J., Gil-Carton, D., Wang, D., Fernandez-Tornero, C.
Deposit date:2018-07-26
Release date:2018-08-29
Last modified:2018-09-12
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of RNA polymerase I stalling at UV light-induced DNA damage.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5LMX
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MONOMERIC RNA POLYMERASE I AT 4.9 A RESOLUTION
Descriptor:DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1,DNA-directed RNA polymerases I and III subunit RPAC1, ...
Authors:Torreira, E., Louro, J.A., Gil-Carton, D., Gallego, O., Calvo, O., Fernandez-Tornero, C.
Deposit date:2016-08-02
Release date:2017-03-22
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription.
Elife, 6, 2017
5ME0
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STRUCTURE OF THE 30S PRE-INITIATION COMPLEX 1 (30S IC-1) STALLED BY GE81112
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Lopez-Alonso, J.P., Fabbretti, A., Kaminishi, T., Iturrioz, I., Brandi, L., Gil Carton, D., Gualerzi, C., Fucini, P., Connell, S.
Deposit date:2016-11-14
Release date:2017-01-11
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways.
Nucleic Acids Res., 45, 2017
5ME1
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STRUCTURE OF THE 30S PRE-INITIATION COMPLEX 2 (30S IC-2) STALLED BY GE81112
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Lopez-Alonso, J.P., Fabbretti, A., Kaminishi, T., Iturrioz, I., Brandi, L., Gil Carton, D., Gualerzi, C., Fucini, P., Connell, S.
Deposit date:2016-11-14
Release date:2017-01-11
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways.
Nucleic Acids Res., 45, 2017
5NP6
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70S STRUCTURE PRIOR TO BYPASSING
Descriptor:mRNA, P-site tRNA-Gly, DNA topoisomerase small subunit, ...
Authors:Agirrezabala, X., Samatova, E., Klimova, M., Zamora, M., Gil-Carton, D., Rodnina, M., Valle, M.
Deposit date:2017-04-13
Release date:2017-06-14
Last modified:2019-02-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Ribosome rearrangements at the onset of translational bypassing.
Sci Adv, 3, 2017
6H82
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CRYO-EM STRUCTURE OF THE ARCHAEAL EXTREMOPHILIC INTERNAL MEMBRANE CONTAINING HALOARCULA HISPANICA ICOSAHEDRAL VIRUS 2 (HHIV-2) AT 3.78 ANGSTROMS RESOLUTION.
Descriptor:VP4, VP7, Uncharacterized protein, ...
Authors:Abrescia, N.G., Santos-Perez, I., Charro, D.
Deposit date:2018-08-01
Release date:2019-04-03
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Structural basis for assembly of vertical single beta-barrel viruses.
Nat Commun, 10, 2019
5NMN
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ATOMIC RESOLUTION STRUCTURE OF LL-37 IN A MONOMERIC STATE
Descriptor:Cathelicidin antimicrobial peptide, SODIUM ION
Authors:Zeth, K., Sancho-Vaello, E.
Deposit date:2017-04-06
Release date:2018-01-24
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
5NNK
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THE STRUCTURE OF LL-37 CRYSTALLIZED IN THE PRESENCE LDAO
Descriptor:Cathelicidin antimicrobial peptide, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Zeth, K., Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
5NNM
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THE CRYSTAL STRUCTURE OF DIMERIC LL-37
Descriptor:Cathelicidin antimicrobial peptide, CARBONATE ION
Authors:Zeth, K., Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
5NNT
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THE DIMERIC STRUCTURE OF LL-37 CRYSTALLIZED IN DPC
Descriptor:Cathelicidin antimicrobial peptide, dodecyl 2-(trimethylammonio)ethyl phosphate
Authors:Zeth, K., Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Method:X-RAY DIFFRACTION (2.209 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
6H9C
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CRYO-EM STRUCTURE OF ARCHAEAL EXTREMOPHILIC INTERNAL MEMBRANE-CONTAINING HALOARCULA CALIFORNIAE ICOSAHEDRAL VIRUS 1 (HCIV-1) AT 3.74 ANGSTROMS RESOLUTION.
Descriptor:VP7, VP9, GPS-III molecule located underneath the capsomer close to the icosahedral three-fold axis., ...
Authors:Abrescia, N.G., Santos-Perez, I., Charro, D.
Deposit date:2018-08-03
Release date:2019-03-27
Last modified:2019-04-03
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structural basis for assembly of vertical single beta-barrel viruses.
Nat Commun, 10, 2019
3LIM
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CRYSTAL STRUCTURE OF THE PORE FORMING TOXIN FRAC FROM SEA ANEMONE ACTINIA FRAGACEA
Descriptor:Fragaceatoxin C, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Mechaly, A.E., Bellomio, A., Morante, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2010-01-25
Release date:2010-12-15
Last modified:2011-07-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins.
Structure, 19, 2011
3ZWG
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CRYSTAL STRUCTURE OF THE PORE-FORMING TOXIN FRAC FROM ACTINIA FRAGACEA (FORM 2)
Descriptor:FRAGACEATOXIN C
Authors:Mechaly, A.E., Bellomio, A., Morante, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2011-07-29
Release date:2012-07-04
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
3ZWJ
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CRYSTAL STRUCTURE OF THE PORE-FORMING TOXIN FRAC FROM ACTINIA FRAGACEA (FORM 3)
Descriptor:FRAGACEATOXIN C
Authors:Mechaly, A.E., Bellomioa, A., Morantea, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2011-08-01
Release date:2012-07-04
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
4D2G
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CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH P15 PEPTIDE
Descriptor:PROLIFERATING CELL NUCLEAR ANTIGEN, P15
Authors:DeBiasio, A., Ibanez, A., Mortuza, G., Molina, R., Cordeiro, T.N., Castillo, F., Villate, M., Merino, N., Lelli, M., Diercks, T., Luque, I., Bernardo, P., Montoya, G., Blanco, F.J.
Deposit date:2014-05-09
Release date:2015-03-18
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of P15(Paf)-PCNA Complex and Implications for Clamp Sliding During DNA Replication and Repair.
Nat.Commun., 6, 2015
6FO1
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HUMAN R2TP SUBCOMPLEX CONTAINING 1 RUVBL1-RUVBL2 HEXAMER BOUND TO 1 RBD DOMAIN FROM RPAP3.
Descriptor:RuvB-like 1, RuvB-like 2, RNA polymerase II-associated protein 3, ...
Authors:Martino, F., Munoz-Hernandez, H., Rodriguez, C.F., Pearl, L.H., Llorca, O.
Deposit date:2018-02-05
Release date:2018-04-04
Last modified:2018-05-30
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:RPAP3 provides a flexible scaffold for coupling HSP90 to the human R2TP co-chaperone complex.
Nat Commun, 9, 2018
3VWI
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HIGH RESOLUTION CRYSTAL STRUCTURE OF FRAC IN THE MONOMERIC FORM
Descriptor:Fragaceatoxin C, CHLORIDE ION, AMMONIUM ION, ...
Authors:Tanaka, K., Morante, K., Caaveiro, J.M.M., Gonzalez-Manas, J.M., Tsumoto, K.
Deposit date:2012-08-23
Release date:2013-08-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
3W9P
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CRYSTAL STRUCTURE OF MONOMERIC FRAC (SECOND CRYSTAL FORM)
Descriptor:Fragaceatoxin C
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2013-04-09
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4ZTD
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CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH A TRAIP PEPTIDE
Descriptor:Proliferating cell nuclear antigen, ALA-PHE-GLN-ALA-LYS-LEU-ASP-THR-PHE-LEU-TRP-SER, ALA-GLY-ALA-GLY-ALA
Authors:Montoya, G., Mortuza, G.B., Blanco, F.J., Ibanez de Opakua, A.
Deposit date:2015-05-14
Release date:2015-12-16
Last modified:2016-01-13
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress.
J.Cell Biol., 212, 2016
6EHT
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MODULATION OF PCNA SLIDING SURFACE BY P15PAF SUGGESTS A SUPPRESSIVE MECHANISM FOR CISPLATIN-INDUCED DNA LESION BYPASS BY POL ETA HOLOENZYME
Descriptor:Proliferating cell nuclear antigen, PCNA-associated factor, DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), ...
Authors:De March, M., Barrera-Vilarmau, S., Mentegari, E., Merino, N., Bressan, E., Maga, G., Crehuet, R., Onesti, S., Blanco, F.J., De Biasio, A.
Deposit date:2017-09-15
Release date:2018-08-08
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:p15PAF binding to PCNA modulates the DNA sliding surface.
Nucleic Acids Res., 46, 2018
6GIS
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STRUCTURAL BASIS OF HUMAN CLAMP SLIDING ON DNA
Descriptor:Proliferating cell nuclear antigen, DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3')
Authors:De March, M., Merino, N., Barrera-Vilarmau, S., Crehuet, R., Onesti, S., Blanco, F.J., De Biasio, A.
Deposit date:2018-05-15
Release date:2018-05-30
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural basis of human PCNA sliding on DNA.
Nat Commun, 8, 2017