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1ZXZ
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BU of 1zxz by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-5000 MME as precipitant
Descriptor: Peptide deformylase, mitochondrial, ZINC ION
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
1ZY0
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BU of 1zy0 by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-6000
Descriptor: Peptide deformylase, mitochondrial, ZINC ION
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
6QRM
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BU of 6qrm by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKRRAA substrates
Descriptor: Apoptosis-inducing factor 3, CHLORIDE ION, COENZYME A, ...
Authors:Dian, C, Riviere, F.B, Asensio, T, Giglione, C, Meinnel, T.
Deposit date:2019-02-19
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-resolution snapshots of human N-myristoyltransferase in action illuminate a mechanism promoting N-terminal Lys and Gly myristoylation.
Nat Commun, 11, 2020
1ZY1
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BU of 1zy1 by Molmil
X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser
Descriptor: Peptide deformylase, mitochondrial, ZINC ION, ...
Authors:Fieulaine, S, Juillan-Binard, C, Serero, A, Dardel, F, Giglione, C, Meinnel, T, Ferrer, J.-L.
Deposit date:2005-06-09
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms
J.Biol.Chem., 280, 2005
5JF4
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BU of 5jf4 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT019
Descriptor: (3R)-3-{3-[(1-benzofuran-3-yl)methyl]-1,2,4-oxadiazol-5-yl}-4-cyclopentyl-N-hydroxybutanamide, ACETATE ION, IMIDAZOLE, ...
Authors:Fieulaine, S, Giglione, C, Meinnel, T.
Deposit date:2016-04-19
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF5
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BU of 5jf5 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT020
Descriptor: (3R)-3-{3-[(2H-1,3-benzodioxol-5-yl)methyl]-1,2,4-oxadiazol-5-yl}-4-cyclopentyl-N-hydroxybutanamide, ACETATE ION, IMIDAZOLE, ...
Authors:Fieulaine, S, Giglione, C, Meinnel, T.
Deposit date:2016-04-19
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
3M6Q
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BU of 3m6q by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41Q mutant in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-03-16
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6O
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BU of 3m6o by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B)
Descriptor: Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-03-16
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6R
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BU of 3m6r by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41M mutant in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-03-16
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6P
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BU of 3m6p by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1B, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2010-03-16
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
4JE6
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BU of 4je6 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase
Descriptor: Peptide deformylase 1A, chloroplastic/mitochondrial, ZINC ION
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
4JE8
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BU of 4je8 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase in complex with Met-Ala-Ser
Descriptor: Peptide deformylase 1A, chloroplastic/mitochondrial, ZINC ION, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
4JE7
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BU of 4je7 by Molmil
Crystal structure of a human-like mitochondrial peptide deformylase in complex with actinonin
Descriptor: ACTINONIN, Peptide deformylase 1A, chloroplastic/mitochondrial, ...
Authors:Fieulaine, S, Meinnel, T, Giglione, C.
Deposit date:2013-02-26
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Understanding the highly efficient catalysis of prokaryotic peptide deformylases by shedding light on the determinants specifying the low activity of the human counterpart.
Acta Crystallogr.,Sect.D, 70, 2014
7OWP
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BU of 7owp by Molmil
HsNMT1 in complex with both MyrCoA and ACE-G-(L-ORN)SFSKPR
Descriptor: ACE-GLY-ORN-SER-PHE-SER-LYS-PRO-ARG, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWQ
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BU of 7owq by Molmil
HsNMT1 in complex with both MyrCoA and peptide N-Methylated-GNCFSKPR
Descriptor: Glycylpeptide N-tetradecanoyltransferase 1, MGY-ASN-CYS-PHE-SER-LYS-PRO-ARG, TETRADECANOYL-COA
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWU
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BU of 7owu by Molmil
HsNMT1 in complex with both CoA and Myr-ANCFSKPR peptide
Descriptor: ALA-ASN-CYS-PHE-SER-LYS-PRO-ARG, COENZYME A, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWR
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BU of 7owr by Molmil
HsNMT1 in complex with both MyrCoA and peptide GGKSFSKPR
Descriptor: GLY-GLY-LYS-SER-PHE-SER-LYS-PRO-ARG, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWO
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BU of 7owo by Molmil
HsNMT1 in complex with both MyrCoA and N-acetylated KSFSKPR peptide
Descriptor: COENZYME A, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWN
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BU of 7own by Molmil
HsNMT1 in complex with both MyrCoA and peptide AKSFSKPR
Descriptor: ALA-LYS-SER-PHE-SER-LYS-PRO-ARG, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
7OWM
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BU of 7owm by Molmil
HsNMT1 in complex with both MyrCoA and HCPA substrate peptide GKQNSKLR
Descriptor: GLYCEROL, Glycylpeptide N-tetradecanoyltransferase 1, Neuron-specific calcium-binding protein hippocalcin, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2021-06-18
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Large-scale Analysis Unveil the Intertwined Paths Promoting NMT-catalyzed Lysine and Glycine Myristoylation.
J.Mol.Biol., 434, 2022
8Q26
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BU of 8q26 by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide
Descriptor: CHLORIDE ION, COENZYME A, Glycylpeptide N-tetradecanoyltransferase 1, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-01
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide
to be published
8Q3D
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BU of 8q3d by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide
Descriptor: CHLORIDE ION, COENZYME A, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-04
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide
to be published
8Q3S
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BU of 8q3s by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide
Descriptor: CHLORIDE ION, COENZYME A, GLY-ASN-CYS-PHE-SER-LYS-ALA-ARG, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-04
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide
to be published
8Q2Z
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BU of 8q2z by Molmil
HsNMT1 in complex with both MyrCoA and GNLLSKFR peptide
Descriptor: CHLORIDE ION, COENZYME A, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-03
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:HsNMT1 in complex with both MyrCoA and GNLLSKFR inhibitor peptide
to be published
8Q23
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BU of 8q23 by Molmil
HsNMT1 in complex with both MyrCoA and Ac-D-ORN-SFSKPR inhibitor peptide
Descriptor: ACE-ORD-SER-PHE-SER-LYS-PRO-ARG, CHLORIDE ION, GLYCEROL, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-01
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:HsNMT1 in complex with both MyrCoA and Ac-D-ORN-SFSKPR inhibitor peptide
to be published

 

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PDB entries from 2024-09-18

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