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2KVY
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BU of 2kvy by Molmil
NMR solution structure of the 4:1 complex between an uncharged distamycin A analogue and [d(TGGGGT)]4
Descriptor: 4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide, DNA (5'-D(*TP*GP*GP*GP*GP*T)-3')
Authors:Cosconati, S, Marinelli, L, Trotta, R, Virno, A, De Tito, S, Romagnoli, R, Pagano, B, Limongelli, V, Giancola, C, Baraldi, P, Mayol, L, Novellino, E, Randazzo, A.
Deposit date:2010-03-29
Release date:2010-05-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and conformational requisites in DNA quadruplex groove binding: another piece to the puzzle.
J.Am.Chem.Soc., 132, 2010
2IDN
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BU of 2idn by Molmil
NMR structure of a new modified Thrombin Binding Aptamer containing a 5'-5' inversion of polarity site
Descriptor: 3'-D(P*GP*G*T)-5'-5'-D(P*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'
Authors:Randazzo, A, Martino, L, Virno, A, Mayol, L, Giancola, C.
Deposit date:2006-09-15
Release date:2007-01-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A new modified thrombin binding aptamer containing a 5'-5' inversion of polarity site.
Nucleic Acids Res., 34, 2006
2KFW
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BU of 2kfw by Molmil
Solution structure of full-length SlyD from E.coli
Descriptor: FKBP-type peptidyl-prolyl cis-trans isomerase slyD
Authors:Martino, L, He, Y, Hands-Taylor, K.L, Valentine, E.R, Kelly, G, Giancola, C, Conte, M.R.
Deposit date:2009-02-28
Release date:2009-09-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The interaction of the Escherichia coli protein SlyD with nickel ions illuminates the mechanism of regulation of its peptidyl-prolyl isomerase activity.
Febs J., 276, 2009
3QLP
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BU of 3qlp by Molmil
X-ray structure of the complex between human alpha thrombin and a modified thrombin binding aptamer (mTBA)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, POTASSIUM ION, ...
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2011-02-03
Release date:2011-10-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Thrombin-aptamer recognition: a revealed ambiguity.
Nucleic Acids Res., 39, 2011
3LN8
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BU of 3ln8 by Molmil
The X-ray structure of Zf-RNase-1 from a new crystal form at pH 7.3
Descriptor: HYDROLASE, SULFATE ION
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2010-02-02
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
3LJE
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BU of 3lje by Molmil
The X-ray structure of zebrafish RNase5
Descriptor: ACETATE ION, SULFATE ION, Zebrafish RNase5
Authors:Russo Krauss, I, Merlino, A, Coscia, F, Mazzarella, L, Sica, F.
Deposit date:2010-01-26
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
3LJD
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BU of 3ljd by Molmil
The X-ray structure of zebrafish RNase1 from a new crystal form at pH 4.5
Descriptor: ACETATE ION, SULFATE ION, Zebrafish RNase1
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2010-01-26
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
2JT7
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BU of 2jt7 by Molmil
NMR solution structure of the 4:1 distamycin A/[d(TGGGGT)]4 complex
Descriptor: DISTAMYCIN A, DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')
Authors:Martino, L, Virno, A.
Deposit date:2007-07-20
Release date:2008-01-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural and thermodynamic studies of the interaction of distamycin A with the parallel quadruplex structure [d(TGGGGT)]4
J.Am.Chem.Soc., 129, 2007
4I7Y
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BU of 4i7y by Molmil
Crystal Structure of Human Alpha Thrombin in Complex with a 27-mer Aptamer Bound to Exosite II
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, DNA (27-MER), ...
Authors:Pica, A, Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2012-12-01
Release date:2013-10-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Duplex-quadruplex motifs in a peculiar structural organization cooperatively contribute to thrombin binding of a DNA aptamer.
Acta Crystallogr.,Sect.D, 69, 2013
4DII
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BU of 4dii by Molmil
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2012-01-31
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.
Nucleic Acids Res., 40, 2012
4DIH
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BU of 4dih by Molmil
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of sodium ions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2012-01-31
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.
Nucleic Acids Res., 40, 2012

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