Author results

2OB7
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STRUCTURE OF TMRNA-(SMPB)2 COMPLEX AS INFERRED FROM CRYO-EM
分子名称:transfer-messenger RNA, 16S ribosomal RNA, SsrA-binding protein
著者Frank, J., Felden, B., Gillet, R., Li, W.
登録日2006-12-18
公開日2007-01-23
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (13.6 Å)
主引用文献Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.
J.Biol.Chem., 282, 2007
3EP2
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MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
分子名称:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
著者Frank, J., Li, W., Agirrezabala, X.
登録日2008-09-29
公開日2008-12-16
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
2Z9Q
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TRANSFER RNA IN THE HYBRID P/E STATE
分子名称:tRNA
著者Frank, J., Li, W.
登録日2007-09-25
公開日2007-10-16
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (11.7 Å)
主引用文献Transfer RNA in the hybrid P/E state
To be Published
3EQ3
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MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
分子名称:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
著者Frank, J., Li, W., Agirrezabala, X.
登録日2008-09-30
公開日2008-12-16
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
3EQ4
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MODEL OF TRNA(LEU)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
分子名称:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
著者Frank, J., Li, W., Agirrezabala, X.
登録日2008-09-30
公開日2008-12-16
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
4V4V
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STRUCTURE OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
分子名称:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
著者Mitra, K., Frank, J.
登録日2006-05-09
公開日2014-07-09
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (15 Å)
主引用文献Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
4V4W
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STRUCTURE OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
分子名称:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
著者Mitra, K., Frank, J.
登録日2006-05-09
公開日2014-07-09
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (15 Å)
主引用文献Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
1JQT
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FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
分子名称:50S Ribosomal protein L11
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1ZN1
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COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX
分子名称:ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ...
著者Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2018-01-31
実験手法ELECTRON MICROSCOPY (14.1 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V47
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME
分子名称:23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ...
著者Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2018-01-24
実験手法ELECTRON MICROSCOPY (12.3 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V48
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME
分子名称:23S ribosomal RNA, 5S ribosomal RNA, tRNA-PHE, ...
著者Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2018-01-24
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V69
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TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME.
分子名称:30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
登録日2008-12-11
公開日2014-07-09
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
1JQM
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID
分子名称:50S Ribosomal protein L11, Elongation Factor G
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQS
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG
分子名称:50S Ribosomal protein L11, Elongation Factor G
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1ZC8
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COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX
分子名称:TLD 16S ribosomal RNA, H2 16S rRNA, H2b d mRNA, ...
著者Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J.
登録日2005-04-11
公開日2005-04-19
最終更新日2013-12-11
実験手法ELECTRON MICROSCOPY (13 Å)
主引用文献Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
1ZN0
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COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF
分子名称:16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G
著者Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (15.5 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
2RDO
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50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND
分子名称:5S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 50S ribosomal protein L25, ...
著者Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J.
登録日2007-09-24
公開日2008-03-04
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (9.1 Å)
主引用文献Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.
J.Mol.Biol., 374, 2007
4V4B
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STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP.
分子名称:18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ...
著者Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
登録日2004-01-06
公開日2014-07-09
最終更新日2015-03-18
実験手法ELECTRON MICROSCOPY (11.7 Å)
主引用文献Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
1EG0
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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
分子名称:FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, HELIX 95 OF 23S RRNA, ...
著者Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.
登録日2000-02-11
公開日2000-03-06
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Solution structure of the E. coli 70S ribosome at 11.5 A resolution.
Cell(Cambridge,Mass.), 100, 2000
1LS2
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FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
分子名称:Phenylalanine transfer RNA, Elongation Factor Tu
著者Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
登録日2002-05-16
公開日2002-06-26
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LU3
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SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
分子名称:PHENYLALANINE TRANSFER RNA
著者Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
登録日2002-05-21
公開日2002-06-26
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1MI6
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DOCKING OF THE MODIFIED RF2 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF RF2 E.COLI 70S RIBOSOME
分子名称:peptide chain release factor RF-2
著者Rawat, U.B.S., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
登録日2002-08-22
公開日2003-01-14
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (10.9 Å)
主引用文献A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1MVR
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DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
分子名称:mRNA, triplet codon (A-site), Helix 34 of 16S rRNA, ...
著者Rawat, U.B., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
登録日2002-09-26
公開日2003-04-01
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (12.8 Å)
主引用文献A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1PN6
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DOMAIN-WISE FITTING OF THE CRYSTAL STRUCTURE OF T.THERMOPHILUS EF-G INTO THE LOW RESOLUTION MAP OF THE RELEASE COMPLEX.PUROMYCIN.EFG.GDPNP OF E.COLI 70S RIBOSOME.
分子名称:Elongation factor G
著者Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
登録日2003-06-12
公開日2003-07-15
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (10.8 Å)
主引用文献Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN7
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COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E.COLI RIBOSOME
分子名称:P-tRNA, 30S ribosomal protein S12, 50S ribosomal protein L11
著者Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
登録日2003-06-12
公開日2003-07-15
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (10.8 Å)
主引用文献Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003