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4UWA
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BU of 4uwa by Molmil
Structure of the ryanodine receptor at resolution of 6.1 A in closed state
Descriptor: RYANODINE RECEPTOR 1
Authors:Efremov, R.G, Leitner, A, Aebersold, R, Raunser, S.
Deposit date:2014-08-11
Release date:2014-12-10
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Architecture and Conformational Switch Mechanism of the Ryanodine Receptor.
Nature, 517, 2015
3RKO
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BU of 3rko by Molmil
Crystal structure of the membrane domain of respiratory complex I from E. coli at 3.0 angstrom resolution
Descriptor: 7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, EICOSANE, NADH-QUINONE OXIDOREDUCTASE SUBUNIT A, ...
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2011-04-18
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the membrane domain of respiratory complex I.
Nature, 476, 2011
4UWE
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BU of 4uwe by Molmil
Structure of the ryanodine receptor at resolution of 8.5 A in partially open state
Descriptor: RYANODINE RECEPTOR 1
Authors:Efremov, R.G, Leitner, A, Aebersold, R, Raunser, S.
Deposit date:2014-08-11
Release date:2014-12-10
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Architecture and Conformational Switch Mechanism of the Ryanodine Receptor.
Nature, 517, 2015
3M9C
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BU of 3m9c by Molmil
Crystal structure of the membrane domain of respiratory complex I from Escherichia coli
Descriptor: NADH-quinone oxidoreductase subunit NuoL, NADH-quinone oxidoreductase subunit NuoM, NADH-quinone oxidoreductase subunit NuoN, ...
Authors:Efremov, R.G, Baradaran, R, Sazanov, L.A.
Deposit date:2010-03-22
Release date:2010-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:The architecture of respiratory complex I
Nature, 465, 2010
3M9S
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BU of 3m9s by Molmil
Crystal structure of respiratory complex I from Thermus thermophilus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Efremov, R.G, Baradaran, R, Sazanov, L.A.
Deposit date:2010-03-22
Release date:2010-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:The architecture of respiratory complex I
Nature, 465, 2010
3POU
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BU of 3pou by Molmil
Crystal structure of E.coli OmpF porin in lipidic cubic phase: space group H32, large unit cell
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
3POX
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BU of 3pox by Molmil
Crystal Structure of E.coli OmpF porin in lipidic cubic phase: space group P1
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein, POTASSIUM ION, ...
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
3POQ
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BU of 3poq by Molmil
Crystal structure of E.coli OmpF porin in lipidic cubic phase: space group H32, small unit cell
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein, THIOCYANATE ION
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
2KPF
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BU of 2kpf by Molmil
Spatial structure of the dimeric transmembrane domain of glycophorin A in bicelles soluton
Descriptor: Glycophorin-A
Authors:Mineev, K.S, Bocharov, E.V, Goncharuk, M.V, Arseniev, A.S, Volynsky, P.E, Efremov, R.G.
Deposit date:2009-10-13
Release date:2010-09-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Dimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments.
Acta Naturae, 3, 2011
5NQ4
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BU of 5nq4 by Molmil
Cytotoxin-1 in DPC-micelle
Descriptor: Cytotoxin 1
Authors:Dubovskii, P.V, Dubinnyi, M.A, Volynsky, P.E, Pustovalova, Y.E, Konshina, A.G, Utkin, Y.N, Efremov, R.G, Arseniev, A.S.
Deposit date:2017-04-19
Release date:2017-12-13
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Impact of membrane partitioning on the spatial structure of an S-type cobra cytotoxin.
J. Biomol. Struct. Dyn., 36, 2018
8BYI
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BU of 8byi by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in complex with CHAPS(Alpo4_CHAPS)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Acetylcholine receptor, ...
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-13
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8OQY
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BU of 8oqy by Molmil
Structure of apo form of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Odorcic, I, Chavez Gutierrez, L, Efremov, R.G.
Deposit date:2023-04-12
Release date:2024-04-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Apo and A beta 46-bound gamma-secretase structures provide insights into amyloid-beta processing by the APH-1B isoform.
Nat Commun, 15, 2024
8OQZ
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BU of 8oqz by Molmil
Structure of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc in complex with Ab46
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Odorcic, I, Chavez Gutierrez, L, Efremov, R.G.
Deposit date:2023-04-12
Release date:2024-04-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Apo and A beta 46-bound gamma-secretase structures provide insights into amyloid-beta processing by the APH-1B isoform.
Nat Commun, 15, 2024
8BX5
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BU of 8bx5 by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (dataset 1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-07
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXD
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BU of 8bxd by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_LMNG_Serotonin dataset 4)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-08
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXF
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BU of 8bxf by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_apo, dataset 1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-08
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXB
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BU of 8bxb by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo in apo state (dataset 2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-08
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXE
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BU of 8bxe by Molmil
Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_comb dataset 3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
Authors:De Gieter, S, Efremov, R.G, Ulens, C.
Deposit date:2022-12-08
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
5LUE
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BU of 5lue by Molmil
Minor form of the recombinant cytotoxin-1 from N. oxiana
Descriptor: VC-1=CYTOTOXIN
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-08
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017
2F95
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BU of 2f95 by Molmil
M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Descriptor: RETINAL, Sensory rhodopsin II, Sensory rhodopsin II transducer, ...
Authors:Moukhametzianov, R.I, Klare, J.P, Efremov, R.G, Baecken, C, Goeppner, A, Labahn, J, Engelhard, M, Bueldt, G, Gordeliy, V.I.
Deposit date:2005-12-05
Release date:2006-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.
Nature, 440, 2006
5T8A
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BU of 5t8a by Molmil
Recombinant cytotoxin-I from the venom of cobra N. oxiana
Descriptor: Cytotoxin 1
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017
6FG3
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BU of 6fg3 by Molmil
Structure of Ryanodine receptor 1 in nanodiscs in the presence of calcium, ATP and ryanodine
Descriptor: CALCIUM ION, Ryanodine receptor 1, ZINC ION
Authors:Willegems, K, Efremov, R.G.
Deposit date:2018-01-09
Release date:2018-08-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
6FOO
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BU of 6foo by Molmil
Structure of Ryanodine Receptor 1 in nanodiscs in the presence of calcium and ATP
Descriptor: Ryanodine receptor 1, ZINC ION
Authors:Willegems, K, Efremov, R.G.
Deposit date:2018-02-08
Release date:2018-08-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
1ZAD
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BU of 1zad by Molmil
Structure of cytotoxin I (CTI) from Naja Oxiana in complex with DPC micelle
Descriptor: Cytotoxin 1
Authors:Dubinnyi, M.A, Pustovalova, Y.E, Dubovskii, P.V, Utkin, Y.N, Konshina, A.G, Efremov, R.G, Arseniev, A.S.
Deposit date:2005-04-06
Release date:2006-06-20
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Interaction of three-finger toxins with phospholipid membranes: comparison of S- and P-type cytotoxins
Biochem.J., 387, 2005
7QD8
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BU of 7qd8 by Molmil
Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in apo state
Descriptor: Transposase for transposon Tn4430
Authors:Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
Deposit date:2021-11-26
Release date:2022-10-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022

 

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