Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4X1E
DownloadVisualize
BU of 4x1e by Molmil
Crystal structure of unliganded E. coli transcriptional regulator RutR, W167A mutant
Descriptor: HTH-type transcriptional regulator RutR
Authors:Nguyen Le Minh, P, de Cima, S, Bervoets, I, Maes, D, Rubio, V, Charlier, D.
Deposit date:2014-11-24
Release date:2015-01-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ligand binding specificity of RutR, a member of the TetR family of transcription regulators in Escherichia coli.
Febs Open Bio, 5, 2015
1B4A
DownloadVisualize
BU of 1b4a by Molmil
STRUCTURE OF THE ARGININE REPRESSOR FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: ARGININE REPRESSOR
Authors:Ni, J, Sakanyan, V, Charlier, D, Glansdorff, N, Van Duyne, G.D.
Deposit date:1998-12-18
Release date:1999-06-15
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the arginine repressor from Bacillus stearothermophilus.
Nat.Struct.Biol., 6, 1999
1B4B
DownloadVisualize
BU of 1b4b by Molmil
STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF THE ARGININE REPRESSOR FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: ARGININE, ARGININE REPRESSOR
Authors:Ni, J, Sakanyan, V, Charlier, D, Glansdorff, N, Van Duyne, G.D.
Deposit date:1998-12-18
Release date:1999-06-15
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the arginine repressor from Bacillus stearothermophilus.
Nat.Struct.Biol., 6, 1999
8BT1
DownloadVisualize
BU of 8bt1 by Molmil
YdaT transcription regulator (CII functional analog)
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Prolic-Kalinsek, M, Loris, R.
Deposit date:2022-11-27
Release date:2023-02-22
Last modified:2023-03-22
Method:X-RAY DIFFRACTION (2.39788437 Å)
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
7AEX
DownloadVisualize
BU of 7aex by Molmil
NRD-HEPN domains (N-terminal truncation) of Escherichia coli RnlA endoribonuclease
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-09-18
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
8C7K
DownloadVisualize
BU of 8c7k by Molmil
YdaS from E. coli O157:H7 cryptic prophage CP-933P
Descriptor: Phage antirepressor protein Cro
Authors:Prolic-Kalinsek, M, Volkov, A.N, Loris, R.
Deposit date:2023-01-16
Release date:2023-01-25
Last modified:2023-03-22
Method:SOLUTION NMR
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
8A0W
DownloadVisualize
BU of 8a0w by Molmil
Crystal structure of the HigA2 antitoxin in complex with operator DNA
Descriptor: Antitoxin HigA-2, DNA (17-MER), PHOSPHATE ION
Authors:Hadzi, S, Loris, R.
Deposit date:2022-05-30
Release date:2023-05-03
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Fuzzy recognition by the prokaryotic transcription factor HigA2 from Vibrio cholerae.
Nat Commun, 15, 2024
7B22
DownloadVisualize
BU of 7b22 by Molmil
Vibrio cholerae ParD2 Antitoxin
Descriptor: Antitoxin ParD
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-11-25
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin.
Acta Crystallogr D Struct Biol, 77, 2021
7R5A
DownloadVisualize
BU of 7r5a by Molmil
Vibrio cholera ParD2:ParE2 antitoxin:toxin complex
Descriptor: Antitoxin ParD, Toxin
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2022-02-10
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Toxin:antitoxin ratio sensing autoregulation of the Vibrio cholerae parDE2 module.
Sci Adv, 10, 2024
6Y2S
DownloadVisualize
BU of 6y2s by Molmil
Escherichia coli R318A RnlA endoribonuclease (single alanine mutant of RnlA)
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-03-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.79 Å)
Cite:Quaternary structure changes control ribonuclease activity of RnlA toxin.
To Be Published
6Y2P
DownloadVisualize
BU of 6y2p by Molmil
Escherichia coli RnlA-RnlB Toxin-Antitoxin System.
Descriptor: Antitoxin RnlB, mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Talavera Perez, A, Loris, R.
Deposit date:2020-02-17
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
6Y2Q
DownloadVisualize
BU of 6y2q by Molmil
Escherichia coli RnlA endoribonuclease
Descriptor: CHLORIDE ION, mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
6Y2R
DownloadVisualize
BU of 6y2r by Molmil
Escherichia coli R255A RnlA endoribonuclease (single alanine mutant of RnlA)
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.89 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
6G1D
DownloadVisualize
BU of 6g1d by Molmil
Corynebacterium glutamicum OxyR C206 mutant
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FORMIC ACID, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-21
Release date:2018-12-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G1B
DownloadVisualize
BU of 6g1b by Molmil
Corynebacterium glutamicum OxyR, oxidized form
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, FORMIC ACID, HYDROGEN PEROXIDE, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-21
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G4R
DownloadVisualize
BU of 6g4r by Molmil
Corynebacterium glutamicum OxyR C206S mutant, H2O2-bound
Descriptor: 1,2-ETHANEDIOL, HYDROGEN PEROXIDE, Hydrogen peroxide-inducible genes activator, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-28
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7NKV
DownloadVisualize
BU of 7nkv by Molmil
PaaR2 regulator N-terminal domain
Descriptor: Phage repressor protein CI
Authors:Prolic-Kalinsek, M, Loris, R, Volkov, A.N.
Deposit date:2021-02-19
Release date:2022-03-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system
To Be Published
3G7Z
DownloadVisualize
BU of 3g7z by Molmil
CcdB dimer in complex with two C-terminal CcdA domains
Descriptor: Cytotoxic protein ccdB, Protein ccdA
Authors:De Jonge, N, Loris, R, Garcia-Pino, A, Buts, L.
Deposit date:2009-02-11
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Rejuvenation of CcdB-Poisoned Gyrase by an Intrinsically Disordered Protein Domain.
Mol.Cell, 35, 2009
3HPW
DownloadVisualize
BU of 3hpw by Molmil
CcdB dimer in complex with one C-terminal CcdA domain
Descriptor: Cytotoxic protein ccdB, DI(HYDROXYETHYL)ETHER, Protein ccdA, ...
Authors:De Jonge, N, Loris, R, Garcia-Pino, A, Buts, L.
Deposit date:2009-06-05
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.452 Å)
Cite:Rejuvenation of CcdB-Poisoned Gyrase by an Intrinsically Disordered Protein Domain.
Mol.Cell, 35, 2009
3HS2
DownloadVisualize
BU of 3hs2 by Molmil
Crystal structure of PHD truncated to residue 57 in an orthorhombic space group
Descriptor: Prevent host death protein, SULFATE ION
Authors:Garcia-Pino, A, Loris, R.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity.
Cell(Cambridge,Mass.), 142, 2010
3HRY
DownloadVisualize
BU of 3hry by Molmil
Crystal structure of PHD in a trigonal space group and partially disordered
Descriptor: Prevent host death protein
Authors:Garcia-Pino, A, Loris, R.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity.
Cell(Cambridge,Mass.), 142, 2010
3K33
DownloadVisualize
BU of 3k33 by Molmil
Crystal structure of the Phd-Doc complex
Descriptor: ACETATE ION, Death on curing protein, Polypeptide of unknown amino acids and source, ...
Authors:Loris, R, Garcia-Pino, A.
Deposit date:2009-10-01
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity.
Cell(Cambridge,Mass.), 142, 2010

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon