Author results

4V7E
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MODEL OF THE SMALL SUBUNIT RNA BASED ON A 5.5 A CRYO-EM MAP OF TRITICUM AESTIVUM TRANSLATING 80S RIBOSOME
Descriptor:Ribosome
Authors:Barrio-Garcia, C., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2013-11-22
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Nature, 506, 2014
3IZD
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MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME. 3IZD IS A SMALL PART (AN EXPANSION SEGMENT) WHICH IS IN AN ALTERNATIVE CONFORMATION TO WHAT IS IN ALREADY 3IZF.
Descriptor:151-MER
Authors:Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2010-10-13
Release date:2010-12-01
Last modified:2012-05-30
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V6I
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LOCALIZATION OF THE SMALL SUBUNIT RIBOSOMAL PROTEINS INTO A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME
Descriptor:Ribosome
Authors:Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2010-10-12
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
2WVW
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CRYO-EM STRUCTURE OF THE RBCL-RBCX COMPLEX
Descriptor:RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN (E.C.4.1.1.39), RBCX PROTEIN
Authors:Liu, C., Young, A.L., Starling-Windhof, A., Bracher, A., Saschenbrecker, S., Rao, B.V., Rao, K.V., Berninghausen, O., Mielke, T., Hartl, F.U., Beckmann, R., Hayer-Hartl, M.
Deposit date:2009-10-20
Release date:2010-01-19
Last modified:2012-06-06
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Coupled Chaperone Action in Folding and Assembly of Hexadecameric Rubisco
Nature, 463, 2010
2WW9
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CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
Descriptor:SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, 60S RIBOSOMAL PROTEIN L4-B, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L19, 60S RIBOSOMAL PROTEIN L25, 60S RIBOSOMAL PROTEIN L26-A, 60S RIBOSOMAL PROTEIN L31-A, 60S RIBOSOMAL PROTEIN L35, 60S RIBOSOMAL PROTEIN L39
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
2WWA
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CRYO-EM STRUCTURE OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
Descriptor:SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, 60S RIBOSOMAL PROTEIN L4-B, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L19, 60S RIBOSOMAL PROTEIN L25, 60S RIBOSOMAL PROTEIN L26-A, 60S RIBOSOMAL PROTEIN L31-A, 60S RIBOSOMAL PROTEIN L35, 60S RIBOSOMAL PROTEIN L39
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
2WWB
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CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
Descriptor:PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA, 60S RIBOSOMAL PROTEIN L4-B, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L19, 60S RIBOSOMAL PROTEIN L25, 60S RIBOSOMAL PROTEIN L26-A, 60S RIBOSOMAL PROTEIN L31-A, 60S RIBOSOMAL PROTEIN L35, 60S RIBOSOMAL PROTEIN L39
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (6.48 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
3IZQ
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STRUCTURE OF THE DOM34-HBS1-GDPNP COMPLEX BOUND TO A TRANSLATING RIBOSOME
Descriptor:Protein DOM34 (E.C.3.1.-.-), Elongation factor 1 alpha-like protein
Authors:Becker, T., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Sieber, H., Abdel Motaal, B., Mielke, T., Berninghausen, O., Beckmann, R.
Deposit date:2010-11-30
Release date:2011-06-01
Last modified:2011-06-29
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.
Nat.Struct.Mol.Biol., 18, 2011
3J15
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MODEL OF RIBOSOME-BOUND ARCHAEAL PELOTA AND ABCE1
Descriptor:Protein pelota (E.C.3.1.-.-), ABC transporter ATP-binding protein
Authors:Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
Deposit date:2011-12-12
Release date:2012-02-22
Last modified:2014-07-23
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
3J16
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MODELS OF RIBOSOME-BOUND DOM34P AND RLI1P AND THEIR RIBOSOMAL BINDING PARTNERS
Descriptor:Dom34p, Rli1p, 60S ribosomal protein L6, 40S ribosomal protein S30E, 60S ribosomal protein L10, 40S ribosomal protein S6E, 60S ribosomal protein L11, 40S ribosomal protein S24E
Authors:Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
Deposit date:2011-12-12
Release date:2012-02-22
Last modified:2012-05-30
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
3J25
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STRUCTURAL BASIS FOR TETM-MEDIATED TETRACYCLINE RESISTANCE
Descriptor:Tetracycline resistance protein tetM
Authors:Doenhoefer, A., Franckenberg, S., Wickles, S., Berninghausen, O., Beckmann, R., Wilson, D.N.
Deposit date:2012-08-22
Release date:2012-10-17
Last modified:2012-10-31
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structural basis for TetM-mediated tetracycline resistance.
Proc.Natl.Acad.Sci.USA, 109, 2012
3J5L
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STRUCTURE OF THE E. COLI 50S SUBUNIT WITH ERMBL NASCENT CHAIN
Descriptor:50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, Erythromycin resistance leader peptide, 50S ribosomal protein L2, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30
Authors:Arenz, S., Ramu, H., Gupta, P., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Mankin, A.S., Wilson, D.N.
Deposit date:2013-10-23
Release date:2014-03-26
Last modified:2014-04-02
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide.
Nat Commun, 5, 2014
3J7Z
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STRUCTURE OF THE E. COLI 50S SUBUNIT WITH ERMCL NASCENT CHAIN
Descriptor:50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L10, 50S ribosomal protein L7/L12, 50S ribosomal protein L2, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, ErmCL nascent chain
Authors:Arenz, S., Meydan, S., Starosta, A.L., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Wilson, D.N.
Deposit date:2014-08-27
Release date:2014-10-22
Last modified:2014-12-17
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
Mol.Cell, 56, 2014
3J9W
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CRYO-EM STRUCTURE OF THE BACILLUS SUBTILIS MIFM-STALLED RIBOSOME COMPLEX
Descriptor:PROTEIN/RNA Complex
Authors:Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.
Deposit date:2015-03-16
Release date:2015-04-29
Last modified:2015-05-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling.
Nat Commun, 6, 2015
3NR5
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CRYSTAL STRUCTURE OF HUMAN MAF1
Descriptor:Repressor of RNA polymerase III transcription MAF1 homolog
Authors:Ringel, R., Vannini, A., Kusser, A.G., Berninghausen, O., Kassavetis, G.A., Cramer, P.
Deposit date:2010-06-30
Release date:2010-10-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Molecular Basis of RNA Polymerase III Transcription Repression by Maf1
Cell(Cambridge,Mass.), 143, 2010
3OC3
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CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP
Descriptor:HELICASE MOT1, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1)
Authors:Wollmann, P., Cui, S., Viswanathan, R., Berninghausen, O., Wells, M.N., Moldt, M., Witte, G., Butryn, A., Wendler, P., Beckmann, R., Auble, D.T., Hopfner, K.-P.
Deposit date:2010-08-09
Release date:2011-07-13
Last modified:2011-07-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
4CG5
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CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING A SECRETORY SUBSTRATE
Descriptor:PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA
Authors:Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.
Deposit date:2013-11-21
Release date:2014-02-05
Last modified:2014-02-19
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Structures of the Sec61 Complex Engaged in Nascent Peptide Translocation or Membrane Insertion.
Nature, 506, 2014
4CG6
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CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING A MEMBRANE-INSERTING SUBSTRATE
Descriptor:PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA, PEPTIDE
Authors:Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.
Deposit date:2013-11-21
Release date:2014-02-05
Last modified:2014-02-19
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Structures of the Sec61 Complex Engaged in Nascent Peptide Translocation or Membrane Insertion.
Nature, 506, 2014
4CG7
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CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME
Descriptor:PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, TRANSPORT PROTEIN SEC61 SUBUNIT BETA
Authors:Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.
Deposit date:2013-11-21
Release date:2014-02-05
Last modified:2014-02-19
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structures of the Sec61 Complex Engaged in Nascent Peptide Translocation or Membrane Insertion.
Nature, 506, 2014
4CRM
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CRYO-EM OF A PRE-RECYCLING COMPLEX WITH ERF1 AND ABCE1
Descriptor:TRANSLATION INITIATION FACTOR RLI1, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
Authors:Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.
Deposit date:2014-02-28
Release date:2014-07-23
Last modified:2016-05-11
Method:ELECTRON MICROSCOPY (8.75 Å)
Cite:Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
4CRN
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CRYO-EM OF A PRETERMINATION COMPLEX WITH ERF1 AND ERF3
Descriptor:ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP COMPLEX, ERF1 IN RIBOSOME-BOUND ERF1-ERF3-GDPNP COMPLEX
Authors:Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.
Deposit date:2014-02-28
Release date:2014-07-23
Last modified:2016-05-11
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
4URD
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CRYO-EM MAP OF TRIGGER FACTOR BOUND TO A TRANSLATING RIBOSOME
Descriptor:TRIGGER FACTOR
Authors:Deeng, J., Chan, K.Y., van der Sluis, E., Bischoff, L., Berninghausen, O., Han, W., Gumbart, J., Schulten, K., Beatrix, B., Beckmann, R.
Deposit date:2014-06-27
Release date:2016-01-13
Last modified:2016-10-05
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Dynamic Behavior of Trigger Factor on the Ribosome.
J.Mol.Biol., 428, 2016
4UTQ
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A STRUCTURAL MODEL OF THE ACTIVE RIBOSOME-BOUND MEMBRANE PROTEIN INSERTASE YIDC
Descriptor:MEMBRANE PROTEIN INSERTASE YIDC, ATP SYNTHASE SUBUNIT C
Authors:Wickles, S., Singharoy, A., Andreani, J., Seemayer, S., Bischoff, L., Berninghausen, O., Soeding, J., Schulten, K., vanderSluis, E.O., Beckmann, R.
Deposit date:2014-07-22
Release date:2014-07-30
Last modified:2014-08-20
Method:ELECTRON MICROSCOPY (8 Å)
Cite:A Structural Model of the Active Ribosome-Bound Membrane Protein Insertase Yidc.
Elife, 3, 2014
4UY8
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MOLECULAR BASIS FOR THE RIBOSOME FUNCTIONING AS A L-TRYPTOPHAN SENSOR - CRYO-EM STRUCTURE OF A TNAC STALLED E.COLI RIBOSOME
Descriptor:50S RIBOSOMAL PROTEIN L32, 50S RIBOSOMAL PROTEIN L33, 50S RIBOSOMAL PROTEIN L34, 50S RIBOSOMAL PROTEIN L35, 50S RIBOSOMAL PROTEIN L36, 50S RIBOSOMAL PROTEIN L10, RIBOSOMAL L7 PROTEIN, TRYPTOPHANASE, 50S RIBOSOMAL PROTEIN L25, 50S RIBOSOMAL PROTEIN L4, 50S RIBOSOMAL PROTEIN L5, 50S RIBOSOMAL PROTEIN L6, RIBOSOMAL PROTEIN L9, 50S RIBOSOMAL PROTEIN L11, 50S RIBOSOMAL PROTEIN L13, 50S RIBOSOMAL PROTEIN L14, 50S RIBOSOMAL PROTEIN L15, 50S RIBOSOMAL PROTEIN L16, 50S RIBOSOMAL PROTEIN L17, 50S RIBOSOMAL PROTEIN L18, 50S RIBOSOMAL PROTEIN L19, 50S RIBOSOMAL PROTEIN L20, 50S RIBOSOMAL PROTEIN L21, 50S RIBOSOMAL PROTEIN L22, 50S RIBOSOMAL PROTEIN L23, 50S RIBOSOMAL PROTEIN L24, 50S RIBOSOMAL PROTEIN L27, 50S RIBOSOMAL PROTEIN L28, 50S RIBOSOMAL PROTEIN L29, 50S RIBOSOMAL PROTEIN L30
Authors:Bischoff, L., Berninghausen, O., Beckmann, R.
Deposit date:2014-08-29
Release date:2014-10-29
Last modified:2014-11-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
Cell Rep., 9, 2014
4V6M
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STRUCTURE OF THE RIBOSOME-SECYE COMPLEX IN THE MEMBRANE ENVIRONMENT
Descriptor:PROTEIN/RNA Complex
Authors:Frauenfeld, J., Gumbart, J., van der Sluis, E.O., Funes, S., Gartmann, M., Beatrix, B., Mielke, T., Berninghausen, O., Becker, T., Schulten, K., Beckmann, R.
Deposit date:2011-02-08
Release date:2014-07-09
Last modified:2014-12-10
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.
Nat.Struct.Mol.Biol., 18, 2011
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