7ARS
| The de novo designed hybrid alpha/beta-miniprotein (with Se-Methionine) | Descriptor: | MAGNESIUM ION, alpha/beta-peptide, trifluoroacetic acid | Authors: | Bejger, M, Fortuna, P, Drewniak-Switalska, M, Rypniewski, W, Berlicki, L. | Deposit date: | 2020-10-26 | Release date: | 2021-07-14 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | A computationally designed beta-amino acid-containing miniprotein. Chem.Commun.(Camb.), 57, 2021
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7ARR
| The de novo designed hybrid alpha/beta-miniprotein | Descriptor: | CHLORIDE ION, MAGNESIUM ION, alpha/beta-peptide, ... | Authors: | Bejger, M, Fortuna, P, Drewniak-Switalska, M, Rypniewski, W, Berlicki, L. | Deposit date: | 2020-10-26 | Release date: | 2021-07-14 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | A computationally designed beta-amino acid-containing miniprotein. Chem.Commun.(Camb.), 57, 2021
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4PV3
| Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with Na+ cations | Descriptor: | L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, SODIUM ION | Authors: | Bejger, M, Gilski, M, Imiolczyk, B, Jaskolski, M. | Deposit date: | 2014-03-14 | Release date: | 2014-09-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase Acta Crystallogr.,Sect.D, 70, 2014
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4PV2
| Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with K+ and Na+ cations | Descriptor: | L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, NITRATE ION, ... | Authors: | Bejger, M, Gilski, M, Imiolczyk, B, Clavel, D, Jaskolski, M. | Deposit date: | 2014-03-14 | Release date: | 2014-09-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase Acta Crystallogr.,Sect.D, 70, 2014
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4PU6
| Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with K+ cations | Descriptor: | ASPARTIC ACID, L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, ... | Authors: | Bejger, M, Gilski, M, Imiolczyk, B, Jaskolski, M. | Deposit date: | 2014-03-12 | Release date: | 2014-09-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase Acta Crystallogr.,Sect.D, 70, 2014
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8OUG
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8BGN
| N,N-diacetylchitobiose deacetylase from Pyrococcus chitonophagus | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, Diacetylchitobiose deacetylase, ... | Authors: | Rypniewski, W, Bejger, M, Biniek-Antosiak, K. | Deposit date: | 2022-10-28 | Release date: | 2023-01-11 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.76 Å) | Cite: | Structural, Thermodynamic and Enzymatic Characterization of N , N -Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus. Int J Mol Sci, 23, 2022
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8BGP
| N,N-diacetylchitobiose deacetylase from Pyrococcus chitonophagus anomalous data | Descriptor: | Diacetylchitobiose deacetylase, ZINC ION | Authors: | Rypniewski, W, Biniek-Antosiak, K, Bejger, M. | Deposit date: | 2022-10-28 | Release date: | 2023-01-11 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.51 Å) | Cite: | Structural, Thermodynamic and Enzymatic Characterization of N , N -Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus. Int J Mol Sci, 23, 2022
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8BGO
| N,N-diacetylchitobiose deacetylase from Pyrococcus chitonophagus with substrate N,N-diacetylchitobiose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Diacetylchitobiose deacetylase, ZINC ION | Authors: | Rypniewski, W, Bejger, M, Biniek-Antosiak, K. | Deposit date: | 2022-10-28 | Release date: | 2023-01-11 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (3.08 Å) | Cite: | Structural, Thermodynamic and Enzymatic Characterization of N , N -Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus. Int J Mol Sci, 23, 2022
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8QMH
| Crystal structure of RNA G2C4 repeats in complex with small synthetic molecule ANP77 | Descriptor: | 3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide, CHLORIDE ION, RNA (5'-R(*GP*GP*CP*CP*CP*C)-3') | Authors: | Kiliszek, A, Ryczek, M, Blaszczyk, L. | Deposit date: | 2023-09-22 | Release date: | 2024-05-01 | Last modified: | 2024-07-03 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand. Nucleic Acids Res., 52, 2024
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8QMI
| Crystal structure of RNA G2C4 repeats - native model | Descriptor: | MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*CP*CP*C)-3') | Authors: | Blaszczyk, L, Kiliszek, A. | Deposit date: | 2023-09-22 | Release date: | 2024-05-01 | Last modified: | 2024-07-03 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand. Nucleic Acids Res., 52, 2024
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4W5U
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9EN6
| Crystal structure of RNA G2C4 repeats - native model pH 6.5 | Descriptor: | MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*CP*CP*C)-3') | Authors: | Mateja-Pluta, M, Kiliszek, A. | Deposit date: | 2024-03-12 | Release date: | 2024-05-01 | Last modified: | 2024-07-03 | Method: | X-RAY DIFFRACTION (0.918 Å) | Cite: | Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand. Nucleic Acids Res., 52, 2024
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7OU1
| Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (monoclinic form MP2) | Descriptor: | 1,2-ETHANEDIOL, L-asparaginase, ZINC ION | Authors: | Imiolczyk, B, Loch, J.I, Gilski, M, Jaskolski, M. | Deposit date: | 2021-06-10 | Release date: | 2021-11-24 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site. Nat Commun, 12, 2021
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7OS5
| Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (orthorhombic form OP) | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, L-asparaginase, ... | Authors: | Loch, J.I, Imiolczyk, B, Gilski, M, Jaskolski, M. | Deposit date: | 2021-06-07 | Release date: | 2021-11-24 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.293 Å) | Cite: | Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site. Nat Commun, 12, 2021
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7OZ6
| Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (monoclinic form MC) | Descriptor: | DI(HYDROXYETHYL)ETHER, L-asparaginase, ZINC ION | Authors: | Gilski, M, Loch, J.I, Imiolczyk, B, Jaskolski, M. | Deposit date: | 2021-06-25 | Release date: | 2021-11-24 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.757 Å) | Cite: | Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site. Nat Commun, 12, 2021
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7OS6
| Crystal structure of Rhizobium etli inducible L-asparaginase ReAV (monoclinic form MP1) | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, ETHANOL, ... | Authors: | Loch, J.I, Imiolczyk, B, Gilski, M, Jaskolski, M. | Deposit date: | 2021-06-07 | Release date: | 2021-11-24 | Last modified: | 2023-04-26 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site. Nat Commun, 12, 2021
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7OS3
| Crystal structure of Rhizobium etli inducible L-asparaginase ReAV solved by S-SAD (orthorhombic form START) | Descriptor: | CHLORIDE ION, L-asparaginase II protein, ZINC ION | Authors: | Gilski, M, Loch, J.I, Imiolczyk, B, Jaskolski, M. | Deposit date: | 2021-06-07 | Release date: | 2021-11-24 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (2.177 Å) | Cite: | Crystal structures of the elusive Rhizobium etli L-asparaginase reveal a peculiar active site. Nat Commun, 12, 2021
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8RUF
| Crystal structure of Rhizobium etli L-asparaginase ReAV D187A mutant | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... | Authors: | Pokrywka, K, Grzechowiak, M, Sliwiak, J, Worsztynowicz, P, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M. | Deposit date: | 2024-01-30 | Release date: | 2024-04-17 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV. Front Chem, 12, 2024
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8RUD
| Crystal structure of Rhizobium etli L-asparaginase ReAV K138A mutant | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... | Authors: | Pokrywka, K, Grzechowiak, M, Sliwiak, J, Worsztynowicz, P, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M. | Deposit date: | 2024-01-30 | Release date: | 2024-04-17 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV. Front Chem, 12, 2024
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8RUG
| Crystal structure of Rhizobium etli L-asparaginase ReAV C189A mutant | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... | Authors: | Pokrywka, K, Grzechowiak, M, Sliwiak, J, Worsztynowicz, P, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M. | Deposit date: | 2024-01-30 | Release date: | 2024-04-17 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV. Front Chem, 12, 2024
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8RUE
| Crystal structure of Rhizobium etli L-asparaginase ReAV H139A mutant | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... | Authors: | Pokrywka, K, Grzechowiak, M, Sliwiak, J, Worsztynowicz, P, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M. | Deposit date: | 2024-01-30 | Release date: | 2024-04-17 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV. Front Chem, 12, 2024
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8RUA
| Crystal structure of Rhizobium etli L-asparaginase ReAV C135A mutant | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... | Authors: | Pokrywka, K, Grzechowiak, M, Sliwiak, J, Worsztynowicz, P, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M. | Deposit date: | 2024-01-30 | Release date: | 2024-04-17 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.71 Å) | Cite: | Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV. Front Chem, 12, 2024
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8AMG
| Crystal structure of AUGUGGCAU duplex with barium ions (model 1) | Descriptor: | BARIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Authors: | Kiliszek, A, Rypniewski, W. | Deposit date: | 2022-08-03 | Release date: | 2022-11-23 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (2.26 Å) | Cite: | Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
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8AMM
| Crystal structure of AUGUGGCAU duplex with cesium ions | Descriptor: | CESIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') | Authors: | Kiliszek, A, Rypniewski, W. | Deposit date: | 2022-08-03 | Release date: | 2022-11-23 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.86 Å) | Cite: | Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
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