Author results

3AHC
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RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH INORGANIC PHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHG
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H64A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH A TRICYCLIC RING FORM OF THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
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H142A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
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H320A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
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H553A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
4H04
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LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM
Descriptor:Lacto-N-biosidase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Ito, T., Katayama, T., Wada, J., Suzuki, R., Ashida, H., Wakagi, T., Yamamoto, K., Fushinobu, S.
Deposit date:2012-09-07
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
5WZN
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ALPHA-N-ACETYLGALACTOSAMINIDASE NAGBB FROM BIFIDOBACTERIUM BIFIDUM - GALNAC COMPLEX
Descriptor:Alpha-N-acetylgalactosaminidase, ZINC ION, N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE, ...
Authors:Sato, M., Arakawa, T., Ashida, H., Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZP
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ALPHA-N-ACETYLGALACTOSAMINIDASE NAGBB FROM BIFIDOBACTERIUM BIFIDUM - LIGAND FREE
Descriptor:Alpha-N-acetylgalactosaminidase, ZINC ION, CALCIUM ION
Authors:Sato, M., Arakawa, T., Ashida, H., Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZQ
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ALPHA-N-ACETYLGALACTOSAMINIDASE NAGBB FROM BIFIDOBACTERIUM BIFIDUM - QUADRUPLE MUTANT
Descriptor:Alpha-N-acetylgalactosaminidase, ZINC ION, GLYCEROL
Authors:Sato, M., Arakawa, T., Ashida, H., Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZR
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ALPHA-N-ACETYLGALACTOSAMINIDASE NAGBB FROM BIFIDOBACTERIUM BIFIDUM - GAL-NHAC-DNJ COMPLEX
Descriptor:Alpha-N-acetylgalactosaminidase, ZINC ION, N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide, ...
Authors:Sato, M., Arakawa, T., Ashida, H., Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
3UES
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CRYSTAL STRUCTURE OF ALPHA-1,3/4-FUCOSIDASE FROM BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS COMPLEXED WITH DEOXYFUCONOJIRIMYCIN
Descriptor:Alpha-1,3/4-fucosidase, (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 1,2-ETHANEDIOL, ...
Authors:Sakurama, H., Fushinobu, S., Yoshida, E., Honda, Y., Hidaka, M., Ashida, H., Kitaoka, M., Katayama, T., Yamamoto, K., Kumagai, H.
Deposit date:2011-10-31
Release date:2012-04-04
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains
J.Biol.Chem., 287, 2012
3UET
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CRYSTAL STRUCTURE OF ALPHA-1,3/4-FUCOSIDASE FROM BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS D172A/E217A MUTANT COMPLEXED WITH LACTO-N-FUCOPENTAOSE II
Descriptor:Alpha-1,3/4-fucosidase, SODIUM ION, ALPHA-L-FUCOSE, ...
Authors:Sakurama, H., Fushinobu, S., Yoshida, E., Honda, Y., Hidaka, M., Ashida, H., Kitaoka, M., Katayama, T., Yamamoto, K., Kumagai, H.
Deposit date:2011-10-31
Release date:2012-04-04
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains
J.Biol.Chem., 287, 2012
5B3F
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CRYSTAL STRUCTURE OF PHOSPHORIBULOKINASE FROM METHANOSPIRILLUM HUNGATEI
Descriptor:Phosphoribulokinase/uridine kinase, SULFATE ION
Authors:Matsumura, H., Ashida, H.
Deposit date:2016-02-22
Release date:2017-01-18
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea
Nat Commun, 8, 2017
2Z44
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CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z45
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CRYSTAL STRUCTURE OF ZN-BOUND ORF134
Descriptor:ORF134, ZINC ION
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z46
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CRYSTAL STRUCTURE OF NATIVE-ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Crystal Structure of ORF134
To be Published
2ZXQ
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CRYSTAL STRUCTURE OF ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE FROM BIFIDOBACTERIUM LONGUM (ENGBF)
Descriptor:Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Suzuki, R., Katayama, T., Ashida, H., Yamamoto, K., Kitaoka, M., Fushinobu, S.
Deposit date:2009-01-05
Release date:2009-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum.
J.Biochem., 2009
1UPS
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GLCNAC[ALPHA]1-4GAL RELEASING ENDO-[BETA]-GALACTOSIDASE FROM CLOSTRIDIUM PERFRINGENS
Descriptor:GLCNAC-ALPHA-1,4-GAL-RELEASING ENDO-BETA-GALACTOSIDASE, CALCIUM ION
Authors:Tempel, W., Liu, Z.-J., Horanyi, P.S., Deng, L., Lee, D., Newton, M.G., Rose, J.P., Ashida, H., Li, S.-C., Li, Y.-T., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-10-10
Release date:2004-11-25
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens.
Proteins, 59, 2005
4M6R
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STRUCTURAL AND BIOCHEMICAL BASIS FOR THE INHIBITION OF CELL DEATH BY APIP, A METHIONINE SALVAGE ENZYME
Descriptor:Methylthioribulose-1-phosphate dehydratase, ZINC ION
Authors:Kang, W., Hong, S.H., Lee, H.M., Kim, N.Y., Lim, Y.C., Le, L.T.M., Lim, B., Kim, H.C., Kim, T.Y., Ashida, H., Yokota, A., Hah, S.S., Chun, K.H., Jung, Y.K., Yang, J.K.
Deposit date:2013-08-10
Release date:2014-01-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical basis for the inhibition of cell death by APIP, a methionine salvage enzyme.
Proc.Natl.Acad.Sci.USA, 111, 2014
2Z8D
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8E
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH GALACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8F
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
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