Author results

5A16
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CRYSTAL STRUCTURE OF FAB4201 RAISED AGAINST HUMAN ERYTHROCYTE ANION EXCHANGER 1
Descriptor:FAB4201 HEAVY CHAIN
Authors:Arakawa, T., Kobayashi-Yugiri, T., Alguel, Y., Weyand, S., Iwanari, H., Hatae, H., Iwata, M., Abe, Y., Hino, T., Ikeda-Suno, C., Kuma, H., Kang, D., Murata, T., Hamakubo, T., Cameron, A., Kobayashi, T., Hamasaki, N., Iwata, S.
Deposit date:2015-04-28
Release date:2015-06-10
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Anion Exchanger Domain of Human Erythrocyte Band 3
Science, 350, 2015
5GTG
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CRYSTAL STRUCTURE OF ONION LACHRYMATORY FACTOR SYNTHASE (LFS) CONTAINING 1,2-PROPANEDIOL
Descriptor:Lachrymatory-factor synthase, S-1,2-PROPANEDIOL, TREHALOSE, ...
Authors:Arakawa, T., Sato, Y., Takabe, J., Masamura, N., Tsuge, N., Imai, S., Fushinobu, S.
Deposit date:2016-08-20
Release date:2017-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure Of Allium Lachrymatory Factor Synthase Elucidates Catalysis On Sulfenic Acid Substrate
to be published
1WOL
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CRYSTAL STRUCTURE OF ST0689, AN ARCHAEAL HEPN HOMOLOGUE
Descriptor:122aa long conserved hypothetical protein, TERTIARY-BUTYL ALCOHOL
Authors:Arakawa, T., Akutsu, J., Yohda, M.
Deposit date:2004-08-20
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure Analysis of ST0689, an archaeal HEPN protein
To be Published
2DD4
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THIOCYANATE HYDROLASE (SCNASE) FROM THIOBACILLUS THIOPARUS RECOMBINANT APO-ENZYME
Descriptor:Thiocyanate hydrolase alpha subunit, Thiocyanate hydrolase beta subunit, Thiocyanate hydrolase gamma subunit, ...
Authors:Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DD5
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THIOCYANATE HYDROLASE (SCNASE) FROM THIOBACILLUS THIOPARUS NATIVE HOLO-ENZYME
Descriptor:Thiocyanate hydrolase alpha subunit, Thiocyanate hydrolase beta subunit, Thiocyanate hydrolase gamma subunit, ...
Authors:Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DXB
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RECOMBINANT THIOCYANATE HYDROLASE COMPRISING PARTIALLY-MODIFIED COBALT CENTERS
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2006-08-25
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
2DXC
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RECOMBINANT THIOCYANATE HYDROLASE, FULLY-MATURED FORM
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2006-08-25
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
2ZZD
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RECOMBINANT THIOCYANATE HYDROLASE, AIR-OXIDIZED FORM OF HOLO-ENZYME
Descriptor:Thiocyanate hydrolase subunit alpha, Thiocyanate hydrolase subunit beta, Thiocyanate hydrolase subunit gamma, ...
Authors:Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
Deposit date:2009-02-09
Release date:2009-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
4YZF
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CRYSTAL STRUCTURE OF THE ANION EXCHANGER DOMAIN OF HUMAN ERYTHROCYTE BAND 3
Descriptor:Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule, 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}
Authors:Alguel, Y., Arakawa, T., Yugiri, T.K., Iwanari, H., Hatae, H., Iwata, M., Abe, Y., Hino, T., Suno, C.I., Kuma, H., Kang, D., Murata, T., Hamakubo, T., Cameron, A.D., Kobayashi, T., Hamasaki, N., Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
5GTE
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CRYSTAL STRUCTURE OF ONION LACHRYMATORY FACTOR SYNTHASE (LFS), SOLUTE-FREE FORM
Descriptor:Lachrymatory-factor synthase, TREHALOSE, SULFATE ION
Authors:Takabe, J., Arakawa, T., Masamura, N., Tsuge, N., Imai, S., Fushinobu, S.
Deposit date:2016-08-20
Release date:2017-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure Of Allium Lachrymatory Factor Synthase Elucidates Catalysis On Sulfenic Acid Substrate
to be published
5GTF
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CRYSTAL STRUCTURE OF ONION LACHRYMATORY FACTOR SYNTHASE (LFS) CONTAINING GLYCEROL
Descriptor:Lachrymatory-factor synthase, GLYCEROL, SULFATE ION, ...
Authors:Takabe, J., Arakawa, T., Masamura, N., Tsuge, N., Imai, S., Fushinobu, S.
Deposit date:2016-08-20
Release date:2017-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure Of Allium Lachrymatory Factor Synthase Elucidates Catalysis On Sulfenic Acid Substrate
to be published
1UG8
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NMR STRUCTURE OF THE R3H DOMAIN FROM POLY(A)-SPECIFIC RIBONUCLEASE
Descriptor:Poly(A)-specific Ribonuclease
Authors:Nagata, T., Muto, Y., Hayami, N., Uda, H., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-15
Release date:2004-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
To be Published
1UGJ
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SOLUTION STRUCTURE OF A MURINE HYPOTHETICAL PROTEIN FROM RIKEN CDNA 2310057J16
Descriptor:RIKEN cDNA 2310057J16 protein
Authors:Nagashima, T., Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16
To be Published
3VG9
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CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN ALLOSTERIC INVERSE-AGONIST ANTIBODY AT 2.7 A RESOLUTION
Descriptor:Adenosine receptor A2a, antibody fab fragment light chain, antibody fab fragment heavy chain, ...
Authors:Hino, T., Arakawa, T., Iwanari, H., Yurugi-Kobayashi, T., Ikeda-Suno, C., Nakada-Nakura, Y., Kusano-Arai, O., Weyand, S., Shimamura, T., Nomura, N., Cameron, A.D., Kobayashi, T., Hamakubo, T., Iwata, S., Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
3VGA
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CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN ALLOSTERIC INVERSE-AGONIST ANTIBODY AT 3.1 A RESOLUTION
Descriptor:Adenosine receptor A2a, antibody fab fragment light chain, antibody fab fragment heavy chain, ...
Authors:Hino, T., Arakawa, T., Iwanari, H., Yurugi-Kobayashi, T., Ikeda-Suno, C., Nakada-Nakura, Y., Kusano-Arai, O., Weyand, S., Shimamura, T., Nomura, N., Cameron, A.D., Kobayashi, T., Hamakubo, T., Iwata, S., Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
1UFN
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SOLUTION STRUCTURE OF THE SAND DOMAIN OF THE PUTATIVE NUCLEAR PROTEIN HOMOLOG (5830484A20RIK)
Descriptor:putative nuclear protein homolog 5830484A20Rik
Authors:Tochio, N., Kobayashi, N., Koshiba, S., Kigawa, T., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-02
Release date:2004-06-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
To be Published
1UG2
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SOLUTION STRUCTURE OF MOUSE HYPOTHETICAL GENE (2610100B20RIK) PRODUCT HOMOLOGOUS TO MYB DNA-BINDING DOMAIN
Descriptor:2610100B20Rik gene product
Authors:Zhao, C., Kigawa, T., Tochio, N., Koshiba, S., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2004-06-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain
To be Published
1UG7
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SOLUTION STRUCTURE OF FOUR HELICAL UP-AND-DOWN BUNDLE DOMAIN OF THE HYPOTHETICAL PROTEIN 2610208M17RIK SIMILAR TO THE PROTEIN FLJ12806
Descriptor:2610208M17Rik protein
Authors:Li, H., Kigawa, T., Tomizawa, T., Koshiba, S., Inoue, M., Shirouzu, M., Terada, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-13
Release date:2004-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806
To be Published
1UH6
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SOLUTION STRUCTURE OF THE MURINE UBIQUITIN-LIKE 5 PROTEIN FROM RIKEN CDNA 0610031K06
Descriptor:ubiquitin-like 5
Authors:Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-25
Release date:2003-12-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
To be Published
1UHR
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SOLUTION STRUCTURE OF THE SWIB DOMAIN OF MOUSE BRG1-ASSOCIATED FACTOR 60A
Descriptor:SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily D member 1
Authors:Yamada, K., Saito, K., Nameki, N., Inoue, M., Koshiba, S., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Matsuda, T., Seki, E., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-09
Release date:2004-08-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
To be Published
1UHS
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SOLUTION STRUCTURE OF MOUSE HOMEODOMAIN-ONLY PROTEIN HOP
Descriptor:homeodomain only protein
Authors:Saito, K., Koshiba, S., Inoue, M., Shirouzu, M., Terada, T., Yabuki, T., Aoki, M., Matsuda, T., Seki, E., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-10
Release date:2004-07-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of mouse homeodomain-only protein HOP
To be Published
1UHW
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SOLUTION STRUCTURE OF THE DEP DOMAIN OF MOUSE PLECKSTRIN
Descriptor:Pleckstrin
Authors:Inoue, K., Yoshida, M., Hatta, R., Hayashi, F., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-11
Release date:2004-01-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain of mouse pleckstrin
To be Published
1V9J
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SOLUTION STRUCTURE OF A BOLA-LIKE PROTEIN FROM MUS MUSCULUS
Descriptor:BolA-like protein RIKEN cDNA 1110025L05
Authors:Kasai, T., Inoue, M., Koshiba, S., Yabuki, T., Aoki, M., Nunokawa, E., Seki, E., Matsuda, T., Matsuda, N., Tomo, Y., Shirouzu, M., Terada, T., Obayashi, N., Hamana, H., Shinya, N., Tatsuguchi, A., Yasuda, S., Yoshida, M., Hirota, H., Matsuo, Y., Tani, K., Suzuki, H., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-26
Release date:2004-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a BolA-like protein from Mus musculus
Protein Sci., 13, 2004
5AYB
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CRYSTAL STRUCTURE OF GH1 BETA-GLUCOSIDASE TD2F2 N223G MUTANT
Descriptor:BETA-GLUCOSIDASE, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, ...
Authors:Jo, T., Manninen, J.A., Matsuzawa, T., Uchiyama, T., Yaoi, K., Arakawa, T., Fushinobu, S.
Deposit date:2015-08-12
Release date:2016-04-27
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2
Febs J., 283, 2016
5AYI
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CRYSTAL STRUCTURE OF GH1 BETA-GLUCOSIDASE TD2F2 N223Q MUTANT
Descriptor:BETA-GLUCOSIDASE, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, ...
Authors:Jo, T., Manninen, J.A., Matsuzawa, T., Uchiyama, T., Yaoi, K., Arakawa, T., Fushinobu, S.
Deposit date:2015-08-21
Release date:2016-04-27
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2
Febs J., 283, 2016