Author results

4WR4
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CRYSTAL STRUCTURE OF GST MUTATED WITH HALOGENATED TYROSINE (7BGST-1)
Descriptor:Glutathione S-transferase class-mu 26 kDa isozyme, GLUTATHIONE, SULFATE ION
Authors:Akasaka, R., Kawazoe, M., Tomabechi, Y., Ohtake, K., Itagaki, T., Takemoto, C., Shirouzu, M., Yokoyama, S., Sakamoto, K.
Deposit date:2014-10-23
Release date:2015-08-19
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein stabilization utilizing a redefined codon
Sci Rep, 5, 2015
4WR5
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CRYSTAL STRUCTURE OF GST MUTATED WITH HALOGENATED TYROSINE (7CGST-1)
Descriptor:Glutathione S-transferase class-mu 26 kDa isozyme, GLUTATHIONE, SULFATE ION
Authors:Akasaka, R., Kawazoe, M., Tomabechi, Y., Ohtake, K., Itagaki, T., Takemoto, C., Shirouzu, M., Yokoyama, S., Sakamoto, K.
Deposit date:2014-10-23
Release date:2015-08-19
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Protein stabilization utilizing a redefined codon
Sci Rep, 5, 2015
2DBQ
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CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYROCOCCUS HORIKOSHII OT3, COMPLEXED WITH NADP (I41)
Descriptor:Glyoxylate reductase, SULFATE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-16
Release date:2006-06-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate.
Acta Crystallogr.,Sect.D, 63, 2007
2DBR
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CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYROCOCCUS HORIKOSHII OT3, COMPLEXED WITH NADP (P1)
Descriptor:Glyoxylate reductase, SULFATE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-16
Release date:2006-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate.
Acta Crystallogr.,Sect.D, 63, 2007
2DBS
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN TTHC002 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHC002
Authors:Yoshikawa, S., Arai, R., Kamo-Uchikubo, T., Fusatomi, E., Akasaka, R., Bessho, Y., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-16
Release date:2006-06-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a hypothetical protein TTHC002 from Thermus thermophilus HB8
To be Published
2DBZ
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CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYROCOCCUS HORIKOSHII OT3, COMPLEXED WITH NADP (P61)
Descriptor:Glyoxylate reductase, SULFATE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-16
Release date:2006-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate.
Acta Crystallogr.,Sect.D, 63, 2007
2CWX
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CRYSTAL STRUCTURE OF OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-1 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-27
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-1 crystal)
To be Published
2CXE
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CRYSTAL STRUCTURE OF OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-28
Release date:2005-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
To be Published
2D69
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CRYSTAL STRUCTURE OF THE COMPLEX OF SULFATE ION AND OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
Descriptor:Ribulose bisphosphate carboxylase, SULFATE ION
Authors:Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-11-10
Release date:2006-05-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
To be Published
2RT9
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SOLUTION STRUCTURE OF A REGULATORY DOMAIN OF MEIOSIS INHIBITOR
Descriptor:F-box only protein 43, ZINC ION
Authors:Shoji, S., Muto, Y., Ikeda, M., He, F., Tsuda, K., Ohsawa, N., Akasaka, R., Terada, T., Wakiyama, M., Shirouzu, M., Yokoyama, S.
Deposit date:2013-07-05
Release date:2014-07-16
Last modified:2015-01-21
Method:SOLUTION NMR
Cite:The zinc-binding region (ZBR) fragment of Emi2 can inhibit APC/C by targeting its association with the coactivator Cdc20 and UBE2C-mediated ubiquitylation
FEBS Open Bio, 4, 2014
3WOD
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RNA POLYMERASE-GP39 COMPLEX
Descriptor:DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOE
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CRYSTAL STRUCTURE OF P23-45 GP39 (6-109) BOUND TO THERMUS THERMOPHILUS RNA POLYMERASE BETA-FLAP DOMAIN
Descriptor:DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOF
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CRYSTAL STRUCTURE OF P23-45 GP39 (6-132) BOUND TO THERMUS THERMOPHILUS RNA POLYMERASE BETA-FLAP DOMAIN
Descriptor:DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
1WZ7
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CRYSTAL STRUCTURE OF ENHANCER OF RUDIMENTARY HOMOLOGUE (ERH)
Descriptor:Enhancer of rudimentary homolog
Authors:Arai, R., Kukimoto-Niino, M., Uda-Tochio, H., Morita, S., Uchikubo-Kamo, T., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-26
Release date:2005-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.
Protein Sci., 14, 2005
2CWQ
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CRYSTAL STRUCTURE OF CONSERVED PROTEIN TTHA0727 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA0727
Authors:Ito, K., Arai, R., Fusatomi, E., Kamo-Uchikubo, T., Kawaguchi, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-23
Release date:2005-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
Protein Sci., 15, 2006
2CZH
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CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL MONOPHOSPHATASE 2 (IMPA2) WITH PHOSPHATE ION (ORTHORHOMBIC FORM)
Descriptor:Inositol monophosphatase 2, PHOSPHATE ION
Authors:Ito, K., Arai, R., Kamo-Uchikubo, T., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2CZI
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CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL MONOPHOSPHATASE 2 (IMPA2) WITH CALCIUM AND PHOSPHATE IONS
Descriptor:Inositol monophosphatase 2, CALCIUM ION, PHOSPHATE ION
Authors:Arai, R., Ito, K., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2CZK
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CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL MONOPHOSPHATASE 2 (IMPA2) (TRIGONAL FORM)
Descriptor:Inositol monophosphatase 2
Authors:Arai, R., Ito, K., Hanawa-Suetsugu, K., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
2DDK
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CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL MONOPHOSPHATASE 2 (IMPA2) (ORTHORHOMBIC FORM)
Descriptor:Inositol monophosphatase 2
Authors:Arai, R., Ito, K., Kamo-Uchikubo, T., Bessho, Y., Ohba, H., Ohnishi, T., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-01-30
Release date:2007-02-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
1WDV
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN APE2540
Descriptor:hypothetical protein APE2540
Authors:Murayama, K., Kato-Murayama, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-18
Release date:2004-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Acta Crystallogr.,Sect.F, 61, 2005
1WMG
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CRYSTAL STRUCTURE OF THE UNC5H2 DEATH DOMAIN
Descriptor:netrin receptor Unc5h2, SULFITE ION, SULFATE ION
Authors:Handa, N., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-09
Release date:2005-01-09
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the UNC5H2 death domain
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
1WWH
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CRYSTAL STRUCTURE OF THE MPPN DOMAIN OF MOUSE NUP35
Descriptor:nucleoporin 35
Authors:Handa, N., Murayama, K., Kukimoto, M., Hamana, H., Uchikubo, T., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-05
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain
J.Mol.Biol., 363, 2006
2CW9
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CRYSTAL STRUCTURE OF HUMAN TIM44 C-TERMINAL DOMAIN
Descriptor:translocase of inner mitochondrial membrane, PENTAETHYLENE GLYCOL
Authors:Handa, N., Kishishita, S., Morita, S., Kinoshita, Y., Nagano, Y., Uda, H., Terada, T., Uchikubo, T., Takemoto, C., Jin, Z., Chrzas, J., Chen, L., Liu, Z.-J., Wang, B.-C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-17
Release date:2005-12-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form.
Acta Crystallogr.,Sect.D, 63, 2007
2CXF
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RUN DOMAIN OF RAP2 INTERACTING PROTEIN X, CRYSTALLIZED IN C2 SPACE GROUP
Descriptor:rap2 interacting protein x
Authors:Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2005-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2CXL
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RUN DOMAIN OF RAP2 INTERACTING PROTEIN X, CRYSTALLIZED IN I422 SPACE GROUP
Descriptor:rap2 interacting protein x
Authors:Kukimoto-Niino, M., Umehara, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-30
Release date:2005-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
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