Author results

1L4S
  • Download 1l4s
  • View 1l4s
Molmil generated image of 1l4s
SOLUTION STRUCTURE OF RIBOSOME ASSOCIATED FACTOR Y
Descriptor:Protein yfiA
Authors:Ye, K., Serganov, A., Hu, W., Patel, D.J.
Deposit date:2002-03-05
Release date:2002-12-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
Eur.J.Biochem., 269, 2002
1R9F
  • Download 1r9f
  • View 1r9f
Molmil generated image of 1r9f
CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA
Descriptor:5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3', 5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3', Core protein P19, ...
Authors:Ye, K., Malinina, L., Patel, D.J.
Deposit date:2003-10-28
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Recognition of small interfering RNA by a viral suppressor of RNA
Nature, 426, 2003
2CWO
  • Download 2cwo
  • View 2cwo
Molmil generated image of 2cwo
CRYSTAL STRUCTURE OF RNA SILENCING SUPPRESSOR P21 FROM BEET YELLOWS VIRUS
Descriptor:RNA silencing suppressor
Authors:Ye, K., Patel, D.J.
Deposit date:2005-06-22
Release date:2005-10-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:RNA Silencing Suppressor p21 of Beet Yellows Virus Forms an RNA Binding Octameric Ring Structure
STRUCTURE, 13, 2005
2MQJ
  • Download 2mqj
  • View 2mqj
Molmil generated image of 2mqj
SOLUTION STRUCTURE OF UBIQUITIN-LIKE PROTEIN FROM CALDIARCHAEUM SUBTERRANEUM
Descriptor:Ubiquitin-like protein
Authors:Ye, K.
Deposit date:2014-06-22
Release date:2015-06-24
Last modified:2016-04-27
Method:SOLUTION NMR
Cite:Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum
To be Published
3ICX
  • Download 3icx
  • View 3icx
Molmil generated image of 3icx
CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS NOP5 (135-380)
Descriptor:Pre mRNA splicing protein, SULFATE ION
Authors:Ye, K.
Deposit date:2009-07-19
Release date:2009-08-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
3ID5
  • Download 3id5
  • View 3id5
Molmil generated image of 3id5
CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS C/D RNP ASSEMBLED WITH NOP5, FIBRILLARIN, L7AE AND A SPLIT HALF C/D RNA
Descriptor:Pre mRNA splicing protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, 50S ribosomal protein L7Ae, ...
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (4.01 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
3ID6
  • Download 3id6
  • View 3id6
Molmil generated image of 3id6
CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS NOP5 (1-262) AND FIBRILLARIN COMPLEX
Descriptor:Pre mRNA splicing protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
1SI2
  • Download 1si2
  • View 1si2
Molmil generated image of 1si2
CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX OF DEOXYNUCLEOTIDE OVERHANG
Descriptor:5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3', Eukaryotic translation initiation factor 2C 1
Authors:Ye, K., Ma, J.B., Patel, D.
Deposit date:2004-02-26
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
1SI3
  • Download 1si3
  • View 1si3
Molmil generated image of 1si3
CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX
Descriptor:5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1
Authors:Ye, K., Ma, J.B., Patel, D.
Deposit date:2004-02-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
2HVY
  • Download 2hvy
  • View 2hvy
Molmil generated image of 2hvy
CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS
Descriptor:H/ACA RNA, Probable tRNA pseudouridine synthase B, Small nucleolar rnp similar to gar1, ...
Authors:Ye, K.
Deposit date:2006-07-31
Release date:2006-09-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an H/ACA box ribonucleoprotein particle
Nature, 443, 2006
3HAX
  • Download 3hax
  • View 3hax
Molmil generated image of 3hax
CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND GAR1-MINUS H/ACA RNP FROM PYROCOCCUS FURIOSUS
Descriptor:Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, 50S ribosomal protein L7Ae, ...
Authors:Ye, K.
Deposit date:2009-05-03
Release date:2009-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase.
Mol.Cell, 34, 2009
3HAY
  • Download 3hay
  • View 3hay
Molmil generated image of 3hay
CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND FULL H/ACA RNP FROM PYROCOCCUS FURIOSUS
Descriptor:Probable tRNA pseudouridine synthase B, Small nucleolar rnp gar1-like protein, Ribosome biogenesis protein Nop10, ...
Authors:Ye, K.
Deposit date:2009-05-03
Release date:2009-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4.99 Å)
Cite:Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase.
Mol.Cell, 34, 2009
3NO7
  • Download 3no7
  • View 3no7
Molmil generated image of 3no7
CRYSTAL STRUCTURE OF THE CENTROMERE-BINDING PROTEIN PARB FROM PLASMID PCXC100
Descriptor:Putative plasmid related protein, SULFATE ION
Authors:Ye, K.
Deposit date:2010-06-24
Release date:2010-12-22
Last modified:2014-02-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure and centromere binding of the plasmid segregation protein ParB from pCXC100
Nucleic Acids Res., 39, 2011
3RNV
  • Download 3rnv
  • View 3rnv
Molmil generated image of 3rnv
STRUCTURE OF THE AUTOCATALYTIC CYSTEINE PROTEASE DOMAIN OF POTYVIRUS HELPER-COMPONENT PROTEINASE
Descriptor:Helper component proteinase
Authors:Ye, K.
Deposit date:2011-04-22
Release date:2011-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the autocatalytic cysteine protease domain of potyvirus helper-component proteinase
to be published
3U28
  • Download 3u28
  • View 3u28
Molmil generated image of 3u28
CRYSTAL STRUCTURE OF A CBF5-NOP10-GAR1 COMPLEX FROM SACCHAROMYCES CEREVISIAE
Descriptor:H/ACA ribonucleoprotein complex subunit 4, H/ACA ribonucleoprotein complex subunit 3, H/ACA ribonucleoprotein complex subunit 1
Authors:Ye, K., Li, S.
Deposit date:2011-10-02
Release date:2011-12-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase
Genes Dev., 25, 2011
3UAH
  • Download 3uah
  • View 3uah
Molmil generated image of 3uah
STRUCTURE OF THE SHQ1 SPECIFIC DOMAIN FROM SACCHAROMYCES CEREVISIAE
Descriptor:Protein SHQ1
Authors:Ye, K.
Deposit date:2011-10-21
Release date:2011-12-14
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the Shq1-Cbf5-Nop10-Gar1 complex and implications for H/ACA RNP biogenesis and dyskeratosis congenita
Embo J., 30, 2011
3UAI
  • Download 3uai
  • View 3uai
Molmil generated image of 3uai
STRUCTURE OF THE SHQ1-CBF5-NOP10-GAR1 COMPLEX FROM SACCHAROMYCES CEREVISIAE
Descriptor:H/ACA ribonucleoprotein complex subunit 4, H/ACA ribonucleoprotein complex subunit 3, H/ACA ribonucleoprotein complex subunit 1, ...
Authors:Ye, K.
Deposit date:2011-10-21
Release date:2011-12-14
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structure of the Shq1-Cbf5-Nop10-Gar1 complex and implications for H/ACA RNP biogenesis and dyskeratosis congenita
Embo J., 30, 2011
5WTX
  • Download 5wtx
  • View 5wtx
Molmil generated image of 5wtx
STRUCTURE OF NOP9
Descriptor:Nucleolar protein 9
Authors:Ye, K., Wang, B.
Deposit date:2016-12-15
Release date:2017-01-25
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (3.074 Å)
Cite:Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res., 45, 2017
5WTY
  • Download 5wty
  • View 5wty
Molmil generated image of 5wty
STRUCTURE OF NOP9 RNA COMPLEX
Descriptor:Nucleolar protein 9, RNA (5'-R(*AP*AP*AP*GP*GP*AP*AP*UP*UP*GP*AP*CP*GP*GP*AP*AP*GP*G)-3')
Authors:Ye, K., Wang, B.
Deposit date:2016-12-15
Release date:2017-01-25
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.785 Å)
Cite:Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res., 45, 2017
5WWM
  • Download 5wwm
  • View 5wwm
Molmil generated image of 5wwm
CRYSTAL STRUCTURE OF THE TPR DOMAIN OF RRP5
Descriptor:rRNA biogenesis protein RRP5, SULFATE ION
Authors:Ye, K., Chen, X.
Deposit date:2017-01-03
Release date:2017-01-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.809 Å)
Cite:Correction: Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WWN
  • Download 5wwn
  • View 5wwn
Molmil generated image of 5wwn
CRYSTAL STRUCTURE OF TSR1
Descriptor:Ribosome biogenesis protein TSR1, SULFATE ION
Authors:Ye, K., Wang, B.
Deposit date:2017-01-03
Release date:2017-06-28
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WWO
  • Download 5wwo
  • View 5wwo
Molmil generated image of 5wwo
CRYSTAL STRUCTURE OF ENP1
Descriptor:Essential nuclear protein 1, Protein LTV1
Authors:Ye, K., Zhang, W.
Deposit date:2017-01-03
Release date:2017-06-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WXL
  • Download 5wxl
  • View 5wxl
Molmil generated image of 5wxl
CRYSTAL STRUCTURE OF THE RRS1 AND RPF2 COMPLEX
Descriptor:Ribosome biogenesis protein RPF2, Regulator of ribosome biosynthesis
Authors:Ye, K., Zheng, S.
Deposit date:2017-01-07
Release date:2017-01-25
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WXM
  • Download 5wxm
  • View 5wxm
Molmil generated image of 5wxm
CRYSTAL STRUCTURE OF THE IMP3 AND MPP10 COMPLEX
Descriptor:U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar RNA-associated protein MPP10, SULFATE ION
Authors:Ye, K., Zheng, S.
Deposit date:2017-01-07
Release date:2017-06-28
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WYJ
  • Download 5wyj
  • View 5wyj
Molmil generated image of 5wyj
CRYO-EM STRUCTURE OF THE 90S SMALL SUBUNIT PRE-RIBOSOME (DHR1-DEPLETED, ENP1-TAP, STATE 1)
Descriptor:U3 RNA, rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, ...
Authors:Ye, K., Zhu, X., Sun, Q.
Deposit date:2017-01-13
Release date:2017-03-29
Last modified:2017-05-17
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017